Wall clock time and date at job start Tue Mar 31 2020 11:11:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.35532 * 125.67686 * 2 1 4 4 C 1.35457 * 108.86985 * 180.25945 * 3 2 1 5 5 C 1.39837 * 107.86471 * 359.76689 * 4 3 2 6 6 C 1.37655 * 125.67958 * 179.86095 * 2 1 3 7 7 C 1.46675 * 126.22926 * 0.02562 * 6 2 1 8 8 O 1.21693 * 120.00182 * 18.88364 * 7 6 2 9 9 N 1.34774 * 119.99835 * 198.88467 * 7 6 2 10 10 C 1.47081 * 120.88095 * 186.51965 * 9 7 6 11 11 C 1.53247 * 108.51799 * 231.15979 * 10 9 7 12 12 N 1.46892 * 109.33945 * 306.16715 * 11 10 9 13 13 C 1.46904 * 111.00007 * 187.25598 * 12 11 10 14 14 C 1.53001 * 109.47278 * 163.90011 * 13 12 11 15 15 C 1.50705 * 115.54672 * 304.64480 * 14 13 12 16 16 H 1.07992 * 120.00342 * 118.11396 * 15 14 13 17 17 C 1.37881 * 119.99579 * 298.11340 * 15 14 13 18 18 N 1.31516 * 119.99453 * 172.49086 * 17 15 14 19 19 Si 1.86794 * 120.00235 * 352.76216 * 17 15 14 20 20 H 1.48504 * 109.47161 * 94.45673 * 19 17 15 21 21 H 1.48499 * 109.47425 * 214.45534 * 19 17 15 22 22 H 1.48500 * 109.47363 * 334.46171 * 19 17 15 23 23 C 1.53001 * 117.49926 * 90.31203 * 14 13 12 24 24 C 1.52996 * 117.49981 * 158.97696 * 14 13 12 25 25 C 1.46897 * 111.27041 * 63.10579 * 12 11 10 26 26 C 1.47075 * 120.88146 * 6.49154 * 9 7 6 27 27 H 1.08997 * 109.47408 * 271.62078 * 1 2 3 28 28 H 1.09001 * 109.47006 * 31.62293 * 1 2 3 29 29 H 1.08997 * 109.46954 * 151.61973 * 1 2 3 30 30 H 1.07999 * 125.56813 * 0.06275 * 3 2 1 31 31 H 1.07999 * 126.06977 * 179.74117 * 4 3 2 32 32 H 1.07998 * 126.45853 * 179.97438 * 5 4 3 33 33 H 1.08996 * 109.63241 * 111.45070 * 10 9 7 34 34 H 1.09000 * 109.63161 * 350.86731 * 10 9 7 35 35 H 1.08997 * 109.49084 * 186.20423 * 11 10 9 36 36 H 1.08998 * 109.51468 * 66.14567 * 11 10 9 37 37 H 1.08994 * 109.47043 * 43.89241 * 13 12 11 38 38 H 1.09005 * 109.46767 * 283.89968 * 13 12 11 39 39 H 0.97005 * 119.99317 * 179.97438 * 18 17 15 40 40 H 1.08996 * 117.49415 * 215.00107 * 23 14 13 41 41 H 1.08992 * 117.50142 * 0.02562 * 23 14 13 42 42 H 1.09006 * 117.49982 * 359.97140 * 24 14 13 43 43 H 1.08998 * 117.49900 * 144.97436 * 24 14 13 44 44 H 1.08998 * 109.49305 * 56.85473 * 25 12 11 45 45 H 1.08996 * 109.49871 * 176.93371 * 25 12 11 46 46 H 1.09001 * 109.62730 * 248.54680 * 26 9 7 47 47 H 1.08993 * 109.62921 * 9.12455 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2554 1.1010 0.0000 4 6 3.5521 0.7093 -0.0058 5 6 3.5780 -0.6888 -0.0042 6 6 2.2679 -1.1182 0.0027 7 6 1.8124 -2.5124 0.0056 8 8 0.6757 -2.7819 -0.3353 9 7 2.6528 -3.4950 0.3858 10 6 2.2665 -4.9088 0.2617 11 6 2.5052 -5.5986 1.6092 12 7 3.8924 -5.3687 2.0344 13 6 4.2124 -6.1542 3.2338 14 6 5.7305 -6.2135 3.4146 15 6 6.5054 -6.7416 2.2347 16 1 7.2250 -6.1102 1.7350 17 6 6.2955 -8.0309 1.7935 18 7 6.8585 -8.4443 0.6791 19 14 5.2055 -9.1881 2.7744 20 1 3.8231 -9.1434 2.2336 21 1 5.7331 -10.5723 2.6705 22 1 5.1934 -8.7684 4.1988 23 6 6.3852 -5.1159 4.2557 24 6 6.2635 -6.5370 4.8117 25 6 4.1520 -3.9400 2.2560 26 6 3.9807 -3.1821 0.9352 27 1 -0.3634 0.0291 1.0272 28 1 -0.3633 0.8751 -0.5388 29 1 -0.3633 -0.9041 -0.4885 30 1 1.9082 2.1236 0.0010 31 1 4.4132 1.3611 -0.0112 32 1 4.4583 -1.3145 -0.0081 33 1 2.8724 -5.3879 -0.5073 34 1 1.2115 -4.9783 -0.0033 35 1 2.3291 -6.6693 1.5059 36 1 1.8236 -5.1882 2.3542 37 1 3.8200 -7.1649 3.1216 38 1 3.7606 -5.6840 4.1072 39 1 6.7111 -9.3515 0.3689 40 1 7.3764 -4.7759 3.9557 41 1 5.7345 -4.3518 4.6806 42 1 5.5326 -6.7070 5.6023 43 1 7.1744 -7.1319 4.8777 44 1 3.4475 -3.5522 2.9918 45 1 5.1702 -3.8077 2.6218 46 1 4.7514 -3.4953 0.2308 47 1 4.0591 -2.1100 1.1152 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602765424.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:11:52 Heat of formation + Delta-G solvation = 83.454926 kcal Electronic energy + Delta-G solvation = -27631.664102 eV Core-core repulsion = 24010.656011 eV Total energy + Delta-G solvation = -3621.008092 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.57814 -39.55943 -38.02668 -36.43789 -34.16373 -32.82787 -31.99648 -31.21747 -29.42432 -28.00933 -26.69215 -25.76032 -24.20585 -23.61058 -22.24434 -21.48623 -20.79876 -20.16002 -19.01771 -18.89077 -17.17939 -16.49562 -16.12476 -15.76222 -15.52101 -15.13249 -14.80290 -14.51957 -14.37805 -14.16745 -13.84454 -13.68674 -13.40738 -13.30581 -13.07573 -12.70907 -12.63899 -12.42633 -12.16961 -12.05069 -11.98893 -11.47474 -11.10441 -11.01205 -10.88266 -10.76560 -10.58406 -10.28852 -10.09163 -9.82832 -9.44608 -9.00370 -8.81303 -8.63524 -8.56119 -8.32625 -8.24637 -7.58330 -5.98684 -3.94177 1.43269 2.49858 2.64463 3.25402 3.30541 3.32997 3.42758 3.47370 4.32239 4.51051 4.52632 4.65465 4.84981 4.95948 5.02155 5.20625 5.24290 5.27879 5.30945 5.34834 5.46743 5.50248 5.52249 5.59483 5.72038 5.85947 5.92749 5.96284 5.97446 6.04699 6.12751 6.14568 6.18359 6.21896 6.35311 6.46459 6.52195 6.60514 6.72521 6.74676 6.86997 7.05615 7.07998 7.14018 7.47103 7.63418 7.73371 7.90500 8.18749 8.62281 9.04162 9.66620 11.14184 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.020460 B = 0.003663 C = 0.003447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1368.191492 B = 7642.015177 C = 8121.072369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.061 3.939 2 N -0.413 5.413 3 C 0.008 3.992 4 C -0.207 4.207 5 C -0.153 4.153 6 C -0.045 4.045 7 C 0.587 3.413 8 O -0.562 6.562 9 N -0.592 5.592 10 C 0.121 3.879 11 C 0.042 3.958 12 N -0.504 5.504 13 C 0.094 3.906 14 C 0.012 3.988 15 C -0.454 4.454 16 H 0.074 0.926 17 C 0.083 3.917 18 N -0.899 5.899 19 Si 0.866 3.134 20 H -0.283 1.283 21 H -0.296 1.296 22 H -0.255 1.255 23 C -0.189 4.189 24 C -0.198 4.198 25 C 0.047 3.953 26 C 0.082 3.918 27 H 0.072 0.928 28 H 0.082 0.918 29 H 0.107 0.893 30 H 0.167 0.833 31 H 0.143 0.857 32 H 0.162 0.838 33 H 0.083 0.917 34 H 0.090 0.910 35 H 0.084 0.916 36 H 0.026 0.974 37 H 0.062 0.938 38 H 0.012 0.988 39 H 0.261 0.739 40 H 0.084 0.916 41 H 0.067 0.933 42 H 0.064 0.936 43 H 0.086 0.914 44 H 0.022 0.978 45 H 0.100 0.900 46 H 0.086 0.914 47 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.200 16.673 0.901 19.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 N -0.087 5.087 3 C -0.127 4.127 4 C -0.231 4.231 5 C -0.178 4.178 6 C -0.159 4.159 7 C 0.377 3.623 8 O -0.443 6.443 9 N -0.323 5.323 10 C -0.001 4.001 11 C -0.087 4.087 12 N -0.228 5.228 13 C -0.033 4.033 14 C 0.011 3.989 15 C -0.492 4.492 16 H 0.092 0.908 17 C -0.118 4.118 18 N -0.537 5.537 19 Si 0.695 3.305 20 H -0.210 1.210 21 H -0.223 1.223 22 H -0.179 1.179 23 C -0.226 4.226 24 C -0.236 4.236 25 C -0.082 4.082 26 C -0.039 4.039 27 H 0.090 0.910 28 H 0.100 0.900 29 H 0.126 0.874 30 H 0.184 0.816 31 H 0.161 0.839 32 H 0.179 0.821 33 H 0.101 0.899 34 H 0.109 0.891 35 H 0.102 0.898 36 H 0.045 0.955 37 H 0.080 0.920 38 H 0.030 0.970 39 H 0.071 0.929 40 H 0.103 0.897 41 H 0.086 0.914 42 H 0.083 0.917 43 H 0.105 0.895 44 H 0.040 0.960 45 H 0.118 0.882 46 H 0.104 0.896 47 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -10.877 16.164 0.215 19.484 hybrid contribution -1.085 -0.475 1.204 1.689 sum -11.962 15.688 1.419 19.780 Atomic orbital electron populations 1.22305 0.76398 1.05692 1.03577 1.43839 1.06684 1.05011 1.53126 1.22003 0.90817 0.91390 1.08487 1.20889 0.95971 0.95133 1.11108 1.21885 0.95109 0.95508 1.05324 1.20073 0.90577 0.87533 1.17708 1.17003 0.84425 0.83535 0.77326 1.90719 1.18813 1.83917 1.50865 1.47830 1.16900 1.06095 1.61512 1.21770 1.01562 0.78806 0.97967 1.22464 0.89925 1.00782 0.95573 1.61663 1.19864 1.06237 1.35040 1.21813 0.96985 0.96183 0.88349 1.19380 0.90445 0.98141 0.90973 1.20056 1.21054 0.97607 1.10463 0.90795 1.24786 0.95017 0.97922 0.94103 1.69907 1.45242 1.17844 1.20734 0.87071 0.80783 0.80280 0.82403 1.20950 1.22324 1.17891 1.22827 1.01832 0.91154 1.06764 1.23080 1.02916 0.98373 0.99239 1.22492 1.02364 0.88283 0.95057 1.22868 0.83463 1.01630 0.95987 0.90968 0.89974 0.87448 0.81618 0.83910 0.82077 0.89901 0.89131 0.89786 0.95541 0.91957 0.96996 0.92921 0.89745 0.91421 0.91727 0.89538 0.95985 0.88188 0.89560 0.87041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.57 10.83 59.85 0.65 1.22 16 2 N -0.41 -4.82 3.16 -120.24 -0.38 -5.20 16 3 C 0.01 0.08 11.38 -16.91 -0.19 -0.12 16 4 C -0.21 -2.13 10.81 -39.98 -0.43 -2.57 16 5 C -0.15 -1.84 8.58 -39.12 -0.34 -2.18 16 6 C -0.05 -0.62 6.58 -81.98 -0.54 -1.16 16 7 C 0.59 9.28 7.60 -12.86 -0.10 9.19 16 8 O -0.56 -9.93 14.23 5.19 0.07 -9.86 16 9 N -0.59 -9.15 3.01 -174.01 -0.52 -9.67 16 10 C 0.12 1.93 6.61 -3.60 -0.02 1.90 16 11 C 0.04 0.70 5.60 -3.70 -0.02 0.68 16 12 N -0.50 -9.57 4.29 -234.33 -1.00 -10.57 16 13 C 0.09 1.91 4.45 -3.82 -0.02 1.89 16 14 C 0.01 0.26 0.62 -155.66 -0.10 0.17 16 15 C -0.45 -12.05 9.11 -34.44 -0.31 -12.37 16 16 H 0.07 2.17 8.06 -52.49 -0.42 1.74 16 17 C 0.08 2.31 5.46 -17.82 -0.10 2.21 16 18 N -0.90 -26.82 13.96 55.43 0.77 -26.04 16 19 Si 0.87 21.06 24.83 -169.99 -4.22 16.84 16 20 H -0.28 -6.77 7.05 56.52 0.40 -6.37 16 21 H -0.30 -7.36 7.11 56.52 0.40 -6.96 16 22 H -0.25 -5.85 5.89 56.52 0.33 -5.52 16 23 C -0.19 -3.60 8.30 -26.69 -0.22 -3.82 16 24 C -0.20 -4.04 8.35 -26.69 -0.22 -4.26 16 25 C 0.05 0.76 5.42 -3.70 -0.02 0.74 16 26 C 0.08 1.19 5.22 -3.60 -0.02 1.17 16 27 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 28 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.11 1.22 6.06 -51.93 -0.31 0.91 16 30 H 0.17 1.01 8.06 -52.49 -0.42 0.59 16 31 H 0.14 1.15 8.06 -52.49 -0.42 0.73 16 32 H 0.16 1.78 5.54 -52.49 -0.29 1.49 16 33 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 34 H 0.09 1.40 7.04 -51.93 -0.37 1.03 16 35 H 0.08 1.44 7.93 -51.93 -0.41 1.03 16 36 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.06 1.35 4.52 -51.93 -0.23 1.11 16 38 H 0.01 0.23 8.01 -51.93 -0.42 -0.19 16 39 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 40 H 0.08 1.62 8.14 -51.93 -0.42 1.19 16 41 H 0.07 1.15 7.93 -51.93 -0.41 0.73 16 42 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 43 H 0.09 1.83 8.14 -51.93 -0.42 1.40 16 44 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 45 H 0.10 1.67 5.76 -51.93 -0.30 1.37 16 46 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 47 H 0.11 1.38 3.77 -51.93 -0.20 1.18 16 LS Contribution 360.75 15.07 5.44 5.44 Total: -1.00 -31.93 360.75 -9.07 -40.99 By element: Atomic # 1 Polarization: 12.60 SS G_CDS: -7.22 Total: 5.38 kcal Atomic # 6 Polarization: -5.30 SS G_CDS: -2.00 Total: -7.30 kcal Atomic # 7 Polarization: -50.35 SS G_CDS: -1.13 Total: -51.49 kcal Atomic # 8 Polarization: -9.93 SS G_CDS: 0.07 Total: -9.86 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -4.22 Total: 16.84 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -31.93 -9.07 -40.99 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602765424.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.448 kcal (2) G-P(sol) polarization free energy of solvation -31.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.993 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds