Wall clock time and date at job start Tue Mar 31 2020 11:11:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.35532 * 125.67686 * 2 1 4 4 C 1.35457 * 108.86985 * 180.25945 * 3 2 1 5 5 C 1.39837 * 107.86471 * 359.76689 * 4 3 2 6 6 C 1.37655 * 125.67958 * 179.86095 * 2 1 3 7 7 C 1.46675 * 126.22926 * 0.02562 * 6 2 1 8 8 O 1.21693 * 120.00182 * 18.88364 * 7 6 2 9 9 N 1.34774 * 119.99835 * 198.88467 * 7 6 2 10 10 C 1.47081 * 120.88095 * 186.51965 * 9 7 6 11 11 C 1.53247 * 108.51799 * 231.15979 * 10 9 7 12 12 N 1.46892 * 109.33945 * 306.16715 * 11 10 9 13 13 C 1.46904 * 111.00007 * 187.25598 * 12 11 10 14 14 C 1.53001 * 109.47278 * 163.90011 * 13 12 11 15 15 C 1.50705 * 115.54672 * 304.64480 * 14 13 12 16 16 H 1.07992 * 120.00342 * 118.11396 * 15 14 13 17 17 C 1.37881 * 119.99579 * 298.11340 * 15 14 13 18 18 N 1.31516 * 119.99453 * 172.49086 * 17 15 14 19 19 Si 1.86794 * 120.00235 * 352.76216 * 17 15 14 20 20 H 1.48504 * 109.47161 * 94.45673 * 19 17 15 21 21 H 1.48499 * 109.47425 * 214.45534 * 19 17 15 22 22 H 1.48500 * 109.47363 * 334.46171 * 19 17 15 23 23 C 1.53001 * 117.49926 * 90.31203 * 14 13 12 24 24 C 1.52996 * 117.49981 * 158.97696 * 14 13 12 25 25 C 1.46897 * 111.27041 * 63.10579 * 12 11 10 26 26 C 1.47075 * 120.88146 * 6.49154 * 9 7 6 27 27 H 1.08997 * 109.47408 * 271.62078 * 1 2 3 28 28 H 1.09001 * 109.47006 * 31.62293 * 1 2 3 29 29 H 1.08997 * 109.46954 * 151.61973 * 1 2 3 30 30 H 1.07999 * 125.56813 * 0.06275 * 3 2 1 31 31 H 1.07999 * 126.06977 * 179.74117 * 4 3 2 32 32 H 1.07998 * 126.45853 * 179.97438 * 5 4 3 33 33 H 1.08996 * 109.63241 * 111.45070 * 10 9 7 34 34 H 1.09000 * 109.63161 * 350.86731 * 10 9 7 35 35 H 1.08997 * 109.49084 * 186.20423 * 11 10 9 36 36 H 1.08998 * 109.51468 * 66.14567 * 11 10 9 37 37 H 1.08994 * 109.47043 * 43.89241 * 13 12 11 38 38 H 1.09005 * 109.46767 * 283.89968 * 13 12 11 39 39 H 0.97005 * 119.99317 * 179.97438 * 18 17 15 40 40 H 1.08996 * 117.49415 * 215.00107 * 23 14 13 41 41 H 1.08992 * 117.50142 * 0.02562 * 23 14 13 42 42 H 1.09006 * 117.49982 * 359.97140 * 24 14 13 43 43 H 1.08998 * 117.49900 * 144.97436 * 24 14 13 44 44 H 1.08998 * 109.49305 * 56.85473 * 25 12 11 45 45 H 1.08996 * 109.49871 * 176.93371 * 25 12 11 46 46 H 1.09001 * 109.62730 * 248.54680 * 26 9 7 47 47 H 1.08993 * 109.62921 * 9.12455 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2554 1.1010 0.0000 4 6 3.5521 0.7093 -0.0058 5 6 3.5780 -0.6888 -0.0042 6 6 2.2679 -1.1182 0.0027 7 6 1.8124 -2.5124 0.0056 8 8 0.6757 -2.7819 -0.3353 9 7 2.6528 -3.4950 0.3858 10 6 2.2665 -4.9088 0.2617 11 6 2.5052 -5.5986 1.6092 12 7 3.8924 -5.3687 2.0344 13 6 4.2124 -6.1542 3.2338 14 6 5.7305 -6.2135 3.4146 15 6 6.5054 -6.7416 2.2347 16 1 7.2250 -6.1102 1.7350 17 6 6.2955 -8.0309 1.7935 18 7 6.8585 -8.4443 0.6791 19 14 5.2055 -9.1881 2.7744 20 1 3.8231 -9.1434 2.2336 21 1 5.7331 -10.5723 2.6705 22 1 5.1934 -8.7684 4.1988 23 6 6.3852 -5.1159 4.2557 24 6 6.2635 -6.5370 4.8117 25 6 4.1520 -3.9400 2.2560 26 6 3.9807 -3.1821 0.9352 27 1 -0.3634 0.0291 1.0272 28 1 -0.3633 0.8751 -0.5388 29 1 -0.3633 -0.9041 -0.4885 30 1 1.9082 2.1236 0.0010 31 1 4.4132 1.3611 -0.0112 32 1 4.4583 -1.3145 -0.0081 33 1 2.8724 -5.3879 -0.5073 34 1 1.2115 -4.9783 -0.0033 35 1 2.3291 -6.6693 1.5059 36 1 1.8236 -5.1882 2.3542 37 1 3.8200 -7.1649 3.1216 38 1 3.7606 -5.6840 4.1072 39 1 6.7111 -9.3515 0.3689 40 1 7.3764 -4.7759 3.9557 41 1 5.7345 -4.3518 4.6806 42 1 5.5326 -6.7070 5.6023 43 1 7.1744 -7.1319 4.8777 44 1 3.4475 -3.5522 2.9918 45 1 5.1702 -3.8077 2.6218 46 1 4.7514 -3.4953 0.2308 47 1 4.0591 -2.1100 1.1152 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602765424.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:11:52 Heat of formation + Delta-G solvation = 63.043634 kcal Electronic energy + Delta-G solvation = -27632.549203 eV Core-core repulsion = 24010.656011 eV Total energy + Delta-G solvation = -3621.893192 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.48825 -40.76175 -39.45135 -37.90917 -35.45885 -34.09705 -33.72003 -32.42601 -30.51445 -29.30168 -27.70818 -27.39989 -25.70316 -24.87161 -23.43659 -23.04170 -21.72922 -21.27701 -20.73558 -20.03464 -18.36509 -18.03294 -17.51371 -16.88150 -16.79243 -16.52331 -16.02509 -15.83435 -15.77675 -15.60303 -15.16815 -14.82673 -14.77875 -14.56273 -14.31841 -14.07692 -13.85780 -13.60494 -13.37433 -13.20548 -12.98068 -12.89307 -12.77464 -12.49390 -12.31014 -12.25111 -12.11884 -11.84425 -11.77756 -11.33248 -11.02628 -10.83619 -10.43744 -10.18233 -9.88350 -9.63599 -9.16287 -8.98332 -8.13260 -6.10852 0.45431 1.36462 1.43659 1.54182 1.55652 1.82824 2.23786 2.26073 2.47454 2.89011 3.21879 3.45497 3.48340 3.92756 3.97632 3.98660 4.09282 4.21152 4.21768 4.24730 4.36114 4.37643 4.41257 4.46466 4.52362 4.54365 4.54992 4.59797 4.67694 4.74107 4.77101 4.83344 4.94923 4.99516 5.05927 5.15237 5.15906 5.28129 5.38241 5.41541 5.57317 5.82878 5.84595 5.99366 6.20087 6.28842 6.33360 6.39173 6.49874 6.90553 7.00707 7.53079 9.03372 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.020460 B = 0.003663 C = 0.003447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1368.191492 B = 7642.015177 C = 8121.072369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.060 3.940 2 N -0.420 5.420 3 C 0.026 3.974 4 C -0.218 4.218 5 C -0.153 4.153 6 C -0.085 4.085 7 C 0.584 3.416 8 O -0.589 6.589 9 N -0.595 5.595 10 C 0.126 3.874 11 C 0.048 3.952 12 N -0.531 5.531 13 C 0.100 3.900 14 C -0.015 4.015 15 C -0.442 4.442 16 H 0.030 0.970 17 C 0.028 3.972 18 N -0.953 5.953 19 Si 0.922 3.078 20 H -0.278 1.278 21 H -0.307 1.307 22 H -0.229 1.229 23 C -0.164 4.164 24 C -0.194 4.194 25 C 0.050 3.950 26 C 0.090 3.910 27 H 0.081 0.919 28 H 0.116 0.884 29 H 0.080 0.920 30 H 0.207 0.793 31 H 0.167 0.833 32 H 0.164 0.836 33 H 0.068 0.932 34 H 0.093 0.907 35 H 0.077 0.923 36 H 0.037 0.963 37 H 0.047 0.953 38 H 0.036 0.964 39 H 0.258 0.742 40 H 0.078 0.922 41 H 0.099 0.901 42 H 0.090 0.910 43 H 0.074 0.926 44 H 0.033 0.967 45 H 0.095 0.905 46 H 0.073 0.927 47 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.525 19.489 2.937 22.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 N -0.093 5.093 3 C -0.109 4.109 4 C -0.241 4.241 5 C -0.179 4.179 6 C -0.198 4.198 7 C 0.376 3.624 8 O -0.473 6.473 9 N -0.326 5.326 10 C 0.003 3.997 11 C -0.081 4.081 12 N -0.255 5.255 13 C -0.027 4.027 14 C -0.016 4.016 15 C -0.479 4.479 16 H 0.048 0.952 17 C -0.168 4.168 18 N -0.594 5.594 19 Si 0.749 3.251 20 H -0.205 1.205 21 H -0.235 1.235 22 H -0.151 1.151 23 C -0.201 4.201 24 C -0.232 4.232 25 C -0.078 4.078 26 C -0.031 4.031 27 H 0.099 0.901 28 H 0.134 0.866 29 H 0.099 0.901 30 H 0.224 0.776 31 H 0.184 0.816 32 H 0.181 0.819 33 H 0.087 0.913 34 H 0.111 0.889 35 H 0.095 0.905 36 H 0.055 0.945 37 H 0.066 0.934 38 H 0.054 0.946 39 H 0.067 0.933 40 H 0.097 0.903 41 H 0.117 0.883 42 H 0.108 0.892 43 H 0.093 0.907 44 H 0.051 0.949 45 H 0.113 0.887 46 H 0.091 0.909 47 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -12.205 19.001 2.282 22.698 hybrid contribution -0.604 -1.177 0.514 1.419 sum -12.809 17.824 2.797 22.127 Atomic orbital electron populations 1.22401 0.75368 1.05939 1.04377 1.44104 1.07536 1.04899 1.52789 1.22727 0.90408 0.92428 1.05345 1.21245 0.97333 0.94428 1.11127 1.22051 0.94566 0.96789 1.04524 1.19905 0.91675 0.87061 1.21184 1.17364 0.83980 0.84513 0.76568 1.90696 1.19938 1.84518 1.52121 1.47855 1.17233 1.05792 1.61711 1.21626 1.01413 0.79423 0.97249 1.22402 0.89182 1.00544 0.95992 1.61609 1.21151 1.07750 1.35012 1.21655 0.95353 0.95979 0.89754 1.19274 0.91305 1.01019 0.90052 1.20185 1.19825 0.96702 1.11226 0.95223 1.25503 0.96674 0.99701 0.94927 1.70065 1.48058 1.18157 1.23112 0.86168 0.78987 0.77520 0.82439 1.20470 1.23453 1.15125 1.22854 1.01707 0.91177 1.04398 1.23091 1.02761 0.99121 0.98199 1.22492 1.02233 0.86950 0.96105 1.22870 0.82645 1.02750 0.94847 0.90074 0.86595 0.90114 0.77613 0.81588 0.81878 0.91320 0.88864 0.90450 0.94530 0.93431 0.94608 0.93307 0.90332 0.88256 0.89199 0.90749 0.94867 0.88675 0.90903 0.84689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.98 10.83 127.77 1.38 2.37 16 2 N -0.42 -8.81 3.16 -534.33 -1.69 -10.50 16 3 C 0.03 0.41 11.38 83.48 0.95 1.36 16 4 C -0.22 -3.79 10.81 22.01 0.24 -3.56 16 5 C -0.15 -3.43 8.58 22.57 0.19 -3.24 16 6 C -0.09 -2.25 6.58 40.35 0.27 -1.99 16 7 C 0.58 18.44 7.60 86.45 0.66 19.09 16 8 O -0.59 -21.15 14.23 -4.33 -0.06 -21.21 16 9 N -0.59 -18.40 3.01 -822.65 -2.48 -20.87 16 10 C 0.13 4.08 6.61 86.35 0.57 4.65 16 11 C 0.05 1.59 5.60 86.39 0.48 2.07 16 12 N -0.53 -19.76 4.29 -895.27 -3.84 -23.60 16 13 C 0.10 3.87 4.45 86.30 0.38 4.26 16 14 C -0.02 -0.65 0.62 -52.93 -0.03 -0.68 16 15 C -0.44 -23.91 9.11 25.60 0.23 -23.68 16 16 H 0.03 1.82 8.06 -2.91 -0.02 1.79 16 17 C 0.03 1.60 5.46 84.66 0.46 2.06 16 18 N -0.95 -59.25 13.96 21.45 0.30 -58.95 16 19 Si 0.92 43.82 24.83 68.60 1.70 45.53 16 20 H -0.28 -12.91 7.05 99.48 0.70 -12.21 16 21 H -0.31 -14.98 7.11 99.48 0.71 -14.27 16 22 H -0.23 -9.75 5.89 99.48 0.59 -9.17 16 23 C -0.16 -5.83 8.30 30.62 0.25 -5.58 16 24 C -0.19 -7.35 8.35 30.62 0.26 -7.09 16 25 C 0.05 1.57 5.42 86.38 0.47 2.04 16 26 C 0.09 2.56 5.22 86.35 0.45 3.01 16 27 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 28 H 0.12 1.07 8.14 -2.39 -0.02 1.05 16 29 H 0.08 1.81 6.06 -2.39 -0.01 1.80 16 30 H 0.21 1.39 8.06 -2.91 -0.02 1.36 16 31 H 0.17 2.04 8.06 -2.91 -0.02 2.01 16 32 H 0.16 3.43 5.54 -2.91 -0.02 3.41 16 33 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 34 H 0.09 2.95 7.04 -2.39 -0.02 2.93 16 35 H 0.08 2.65 7.93 -2.39 -0.02 2.63 16 36 H 0.04 1.15 8.14 -2.39 -0.02 1.13 16 37 H 0.05 1.96 4.52 -2.39 -0.01 1.95 16 38 H 0.04 1.22 8.01 -2.38 -0.02 1.20 16 39 H 0.26 15.32 8.31 -92.70 -0.77 14.55 16 40 H 0.08 2.88 8.14 -2.39 -0.02 2.86 16 41 H 0.10 2.93 7.93 -2.39 -0.02 2.91 16 42 H 0.09 2.99 8.14 -2.38 -0.02 2.97 16 43 H 0.07 3.00 8.14 -2.39 -0.02 2.98 16 44 H 0.03 0.97 8.14 -2.39 -0.02 0.95 16 45 H 0.10 3.03 5.76 -2.39 -0.01 3.02 16 46 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 47 H 0.14 3.18 3.77 -2.39 -0.01 3.17 16 Total: -1.00 -71.74 360.75 2.00 -69.74 By element: Atomic # 1 Polarization: 23.94 SS G_CDS: 0.84 Total: 24.78 kcal Atomic # 6 Polarization: -12.13 SS G_CDS: 7.22 Total: -4.91 kcal Atomic # 7 Polarization: -106.22 SS G_CDS: -7.70 Total: -113.92 kcal Atomic # 8 Polarization: -21.15 SS G_CDS: -0.06 Total: -21.21 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 1.70 Total: 45.53 kcal Total: -71.74 2.00 -69.74 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602765424.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.785 kcal (2) G-P(sol) polarization free energy of solvation -71.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.741 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds