Wall clock time and date at job start Tue Mar 31 2020 11:31:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46503 * 119.99639 * 2 1 4 4 C 1.39043 * 120.00040 * 180.02562 * 2 1 3 5 5 C 1.39220 * 119.93519 * 359.97438 * 4 2 1 6 6 C 1.37608 * 120.07270 * 180.02562 * 5 4 2 7 7 C 1.39791 * 119.92853 * 359.97438 * 6 5 4 8 8 C 1.47523 * 120.06755 * 180.02562 * 7 6 5 9 9 O 1.21598 * 119.99879 * 327.01722 * 8 7 6 10 10 N 1.34778 * 120.00101 * 147.02052 * 8 7 6 11 11 C 1.47073 * 120.88165 * 354.75169 * 10 8 7 12 12 C 1.53242 * 108.52513 * 231.20989 * 11 10 8 13 13 N 1.46902 * 109.33872 * 306.17077 * 12 11 10 14 14 C 1.46893 * 111.00055 * 187.24948 * 13 12 11 15 15 C 1.50701 * 109.47116 * 170.00127 * 14 13 12 16 16 H 1.07991 * 119.99710 * 0.02562 * 15 14 13 17 17 C 1.37876 * 119.99825 * 180.02562 * 15 14 13 18 18 N 1.31515 * 120.00080 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 119.99934 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.47069 * 359.97438 * 19 17 15 21 21 H 1.48507 * 109.47322 * 120.00055 * 19 17 15 22 22 H 1.48501 * 109.47315 * 240.00246 * 19 17 15 23 23 C 1.46904 * 111.26559 * 63.10067 * 13 12 11 24 24 C 1.47075 * 120.88240 * 174.78282 * 10 8 7 25 25 C 1.39794 * 119.86659 * 0.26930 * 7 6 5 26 26 C 1.37610 * 119.92462 * 359.47168 * 25 7 6 27 27 H 1.08996 * 109.46813 * 269.99729 * 1 2 3 28 28 H 1.09003 * 109.47207 * 30.00093 * 1 2 3 29 29 H 1.09002 * 109.46647 * 149.99872 * 1 2 3 30 30 H 1.08991 * 109.47426 * 270.00083 * 3 2 1 31 31 H 1.09005 * 109.47071 * 30.00462 * 3 2 1 32 32 H 1.09006 * 109.46666 * 149.99818 * 3 2 1 33 33 H 1.08004 * 119.96185 * 0.02685 * 5 4 2 34 34 H 1.07997 * 120.03203 * 179.97438 * 6 5 4 35 35 H 1.09001 * 109.63064 * 111.49900 * 11 10 8 36 36 H 1.09007 * 109.63102 * 350.91741 * 11 10 8 37 37 H 1.08993 * 109.49658 * 186.20734 * 12 11 10 38 38 H 1.09003 * 109.49048 * 66.13161 * 12 11 10 39 39 H 1.09008 * 109.47204 * 290.00425 * 14 13 12 40 40 H 1.09003 * 109.46983 * 50.00038 * 14 13 12 41 41 H 0.97006 * 119.99941 * 180.02562 * 18 17 15 42 42 H 1.09008 * 109.49239 * 56.85994 * 23 13 12 43 43 H 1.08998 * 109.48914 * 176.90293 * 23 13 12 44 44 H 1.09006 * 109.62914 * 9.07218 * 24 10 8 45 45 H 1.08999 * 109.62637 * 248.50376 * 24 10 8 46 46 H 1.07997 * 120.04113 * 179.72963 * 25 7 6 47 47 H 1.08008 * 119.96077 * 180.25278 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.1603 -1.2041 -0.0005 5 6 1.4628 -2.4090 -0.0005 6 6 2.1480 -3.6024 -0.0005 7 6 3.5459 -3.6040 -0.0011 8 6 4.2836 -4.8816 -0.0017 9 8 3.8228 -5.8499 0.5716 10 7 5.4682 -4.9754 -0.6375 11 6 5.9894 -3.8531 -1.4323 12 6 6.3765 -4.3770 -2.8193 13 7 7.2961 -5.5130 -2.6710 14 6 7.8257 -5.9352 -3.9745 15 6 8.9404 -6.9277 -3.7662 16 1 9.2264 -7.2163 -2.7656 17 6 9.5950 -7.4674 -4.8531 18 7 9.2469 -7.1155 -6.0715 19 14 10.9771 -8.6971 -4.5949 20 1 11.1744 -8.9219 -3.1403 21 1 10.6258 -9.9819 -5.2517 22 1 12.2305 -8.1648 -5.1873 23 6 6.6497 -6.6347 -1.9769 24 6 6.2738 -6.2032 -0.5555 25 6 4.2434 -2.3925 0.0041 26 6 3.5525 -1.2025 -0.0013 27 1 -0.3633 0.0000 1.0276 28 1 -0.3634 0.8900 -0.5139 29 1 -0.3633 -0.8900 -0.5139 30 1 2.3791 1.5835 -1.0276 31 1 1.6084 2.0284 0.5139 32 1 3.1499 1.1384 0.5139 33 1 0.3828 -2.4071 -0.0006 34 1 1.6063 -4.5367 -0.0001 35 1 6.8674 -3.4333 -0.9413 36 1 5.2206 -3.0867 -1.5318 37 1 6.8663 -3.5839 -3.3841 38 1 5.4805 -4.7010 -3.3488 39 1 7.0298 -6.3995 -4.5569 40 1 8.2083 -5.0662 -4.5100 41 1 9.7072 -7.4955 -6.8362 42 1 5.7499 -6.9274 -2.5182 43 1 7.3374 -7.4791 -1.9314 44 1 5.6930 -6.9908 -0.0752 45 1 7.1790 -6.0095 0.0198 46 1 5.3234 -2.3905 0.0081 47 1 4.0908 -0.2662 -0.0015 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000603263322.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:31:07 Heat of formation + Delta-G solvation = 29.068502 kcal Electronic energy + Delta-G solvation = -26419.299693 eV Core-core repulsion = 22795.933229 eV Total energy + Delta-G solvation = -3623.366464 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.51272 -39.22191 -37.43233 -36.27131 -34.39759 -32.41757 -31.59930 -31.04429 -30.01851 -28.55336 -28.16748 -25.92889 -25.13010 -23.40426 -22.58145 -22.18413 -21.41656 -20.37827 -19.05036 -17.57254 -17.05284 -16.40241 -16.16696 -15.68442 -15.49616 -15.00525 -14.84038 -14.70059 -14.38379 -14.10297 -13.96918 -13.84614 -13.52456 -13.44998 -13.05867 -12.92793 -12.55711 -12.54965 -12.41194 -12.29650 -12.12171 -11.78484 -11.24761 -11.12083 -10.98625 -10.83190 -10.69146 -10.56176 -10.47174 -10.08540 -9.86209 -9.57938 -9.24580 -9.05418 -8.47563 -8.36947 -7.57219 -7.28983 -6.04612 -4.06155 1.05107 1.28638 2.73608 2.95095 3.23494 3.30687 3.38239 3.43028 3.81327 4.41179 4.52521 4.55687 4.68649 4.75516 4.84688 4.88022 4.91589 5.12368 5.17293 5.24565 5.30295 5.30977 5.35278 5.37209 5.43905 5.46609 5.58683 5.70039 5.84518 5.85989 5.96377 5.99690 6.07205 6.17015 6.25890 6.37205 6.47281 6.54630 6.59065 6.82865 6.85624 7.13539 7.24889 7.31064 7.65833 7.77572 8.03726 8.14782 8.39943 8.50396 9.01577 9.58402 11.06286 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.025394 B = 0.002553 C = 0.002418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1102.350187 B =10965.366889 C =11579.395528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.090 3.910 2 N -0.633 5.633 3 C 0.090 3.910 4 C 0.234 3.766 5 C -0.209 4.209 6 C -0.013 4.013 7 C -0.188 4.188 8 C 0.562 3.438 9 O -0.553 6.553 10 N -0.603 5.603 11 C 0.100 3.900 12 C 0.039 3.961 13 N -0.536 5.536 14 C 0.193 3.807 15 C -0.508 4.508 16 H 0.065 0.935 17 C 0.055 3.945 18 N -0.898 5.898 19 Si 0.898 3.102 20 H -0.272 1.272 21 H -0.285 1.285 22 H -0.284 1.284 23 C 0.051 3.949 24 C 0.115 3.885 25 C -0.041 4.041 26 C -0.208 4.208 27 H 0.050 0.950 28 H 0.067 0.933 29 H 0.071 0.929 30 H 0.051 0.949 31 H 0.066 0.934 32 H 0.072 0.928 33 H 0.127 0.873 34 H 0.130 0.870 35 H 0.075 0.925 36 H 0.094 0.906 37 H 0.081 0.919 38 H 0.027 0.973 39 H -0.009 1.009 40 H 0.031 0.969 41 H 0.261 0.739 42 H 0.024 0.976 43 H 0.097 0.903 44 H 0.088 0.912 45 H 0.072 0.928 46 H 0.137 0.863 47 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.130 17.183 12.239 26.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.344 5.344 3 C -0.053 4.053 4 C 0.130 3.870 5 C -0.231 4.231 6 C -0.033 4.033 7 C -0.193 4.193 8 C 0.352 3.648 9 O -0.432 6.432 10 N -0.336 5.336 11 C -0.023 4.023 12 C -0.090 4.090 13 N -0.261 5.261 14 C 0.068 3.932 15 C -0.546 4.546 16 H 0.083 0.917 17 C -0.146 4.146 18 N -0.538 5.538 19 Si 0.726 3.274 20 H -0.196 1.196 21 H -0.211 1.211 22 H -0.210 1.210 23 C -0.078 4.078 24 C -0.007 4.007 25 C -0.060 4.060 26 C -0.230 4.230 27 H 0.068 0.932 28 H 0.086 0.914 29 H 0.090 0.910 30 H 0.070 0.930 31 H 0.085 0.915 32 H 0.090 0.910 33 H 0.144 0.856 34 H 0.148 0.852 35 H 0.094 0.906 36 H 0.111 0.889 37 H 0.099 0.901 38 H 0.045 0.955 39 H 0.009 0.991 40 H 0.049 0.951 41 H 0.070 0.930 42 H 0.043 0.957 43 H 0.115 0.885 44 H 0.106 0.894 45 H 0.091 0.909 46 H 0.154 0.846 47 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -16.022 16.976 12.629 26.540 hybrid contribution 0.127 -0.784 -0.705 1.062 sum -15.895 16.192 11.924 25.632 Atomic orbital electron populations 1.21687 0.79363 1.02888 1.01348 1.46266 1.05250 1.03389 1.79468 1.21695 0.97403 0.84730 1.01479 1.17996 0.91345 0.85697 0.91914 1.20589 0.99721 0.90696 1.12109 1.20915 0.92479 0.97819 0.92097 1.19645 0.94163 0.92947 1.12595 1.18260 0.80294 0.87791 0.78436 1.90738 1.67712 1.38841 1.45915 1.48087 1.19721 1.16564 1.49218 1.22412 0.99008 0.88884 0.91950 1.22417 0.95479 0.96126 0.95003 1.62098 1.32936 1.06165 1.24891 1.19728 0.94173 0.95943 0.83315 1.21185 1.16727 1.23717 0.92984 0.91723 1.24997 0.97520 0.97042 0.95091 1.69970 1.41907 1.44073 0.97841 0.86440 0.81817 0.80823 0.78334 1.19603 1.21121 1.21029 1.22336 0.97618 0.95373 0.92455 1.21853 0.94405 0.86233 0.98180 1.21352 1.00183 0.90965 0.93496 1.20602 0.91889 0.98590 1.11948 0.93179 0.91436 0.91015 0.93049 0.91482 0.90980 0.85564 0.85225 0.90642 0.88855 0.90110 0.95513 0.99139 0.95066 0.92962 0.95743 0.88524 0.89354 0.90937 0.84576 0.85434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.48 10.18 59.85 0.61 1.09 16 2 N -0.63 -4.79 3.39 -187.55 -0.64 -5.42 16 3 C 0.09 0.48 10.17 59.85 0.61 1.09 16 4 C 0.23 2.29 6.55 -83.86 -0.55 1.74 16 5 C -0.21 -2.15 9.18 -39.45 -0.36 -2.51 16 6 C -0.01 -0.17 9.59 -39.23 -0.38 -0.54 16 7 C -0.19 -2.57 5.36 -104.95 -0.56 -3.13 16 8 C 0.56 9.35 7.41 -12.47 -0.09 9.25 16 9 O -0.55 -10.84 16.22 5.28 0.09 -10.76 16 10 N -0.60 -9.75 3.01 -173.70 -0.52 -10.27 16 11 C 0.10 1.43 4.87 -3.60 -0.02 1.41 16 12 C 0.04 0.69 5.62 -3.70 -0.02 0.67 16 13 N -0.54 -11.35 4.62 -235.76 -1.09 -12.44 16 14 C 0.19 4.97 4.72 -4.98 -0.02 4.95 16 15 C -0.51 -14.05 8.41 -34.44 -0.29 -14.34 16 16 H 0.06 1.77 7.13 -52.49 -0.37 1.39 16 17 C 0.05 1.54 5.46 -17.82 -0.10 1.45 16 18 N -0.90 -26.56 13.29 55.43 0.74 -25.82 16 19 Si 0.90 21.52 29.54 -169.99 -5.02 16.50 16 20 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 21 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 22 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 23 C 0.05 1.02 5.46 -3.70 -0.02 1.00 16 24 C 0.12 1.98 6.61 -3.61 -0.02 1.95 16 25 C -0.04 -0.46 7.36 -39.23 -0.29 -0.75 16 26 C -0.21 -2.03 9.18 -39.45 -0.36 -2.39 16 27 H 0.05 0.24 8.14 -51.93 -0.42 -0.18 16 28 H 0.07 0.26 8.07 -51.93 -0.42 -0.16 16 29 H 0.07 0.38 6.17 -51.93 -0.32 0.06 16 30 H 0.05 0.26 8.14 -51.93 -0.42 -0.17 16 31 H 0.07 0.25 8.07 -51.93 -0.42 -0.17 16 32 H 0.07 0.36 6.17 -51.93 -0.32 0.04 16 33 H 0.13 1.03 6.11 -52.48 -0.32 0.71 16 34 H 0.13 1.60 7.96 -52.49 -0.42 1.18 16 35 H 0.08 1.00 7.97 -51.93 -0.41 0.58 16 36 H 0.09 1.14 4.50 -51.93 -0.23 0.91 16 37 H 0.08 1.34 7.99 -51.93 -0.41 0.92 16 38 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 39 H -0.01 -0.26 8.13 -51.92 -0.42 -0.68 16 40 H 0.03 0.85 7.97 -51.93 -0.41 0.44 16 41 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 42 H 0.02 0.51 8.14 -51.92 -0.42 0.09 16 43 H 0.10 2.03 6.67 -51.93 -0.35 1.68 16 44 H 0.09 1.52 7.04 -51.93 -0.37 1.16 16 45 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 46 H 0.14 1.38 5.75 -52.49 -0.30 1.08 16 47 H 0.13 0.97 6.11 -52.48 -0.32 0.65 16 LS Contribution 368.34 15.07 5.55 5.55 Total: -1.00 -33.31 368.34 -9.84 -43.15 By element: Atomic # 1 Polarization: 5.66 SS G_CDS: -7.07 Total: -1.41 kcal Atomic # 6 Polarization: 2.80 SS G_CDS: -1.87 Total: 0.93 kcal Atomic # 7 Polarization: -52.44 SS G_CDS: -1.51 Total: -53.96 kcal Atomic # 8 Polarization: -10.84 SS G_CDS: 0.09 Total: -10.76 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -33.31 -9.84 -43.15 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603263322.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.216 kcal (2) G-P(sol) polarization free energy of solvation -33.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.147 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds