Wall clock time and date at job start Tue Mar 31 2020 11:31:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46503 * 119.99639 * 2 1 4 4 C 1.39043 * 120.00040 * 180.02562 * 2 1 3 5 5 C 1.39220 * 119.93519 * 359.97438 * 4 2 1 6 6 C 1.37608 * 120.07270 * 180.02562 * 5 4 2 7 7 C 1.39791 * 119.92853 * 359.97438 * 6 5 4 8 8 C 1.47523 * 120.06755 * 180.02562 * 7 6 5 9 9 O 1.21598 * 119.99879 * 327.01722 * 8 7 6 10 10 N 1.34778 * 120.00101 * 147.02052 * 8 7 6 11 11 C 1.47073 * 120.88165 * 354.75169 * 10 8 7 12 12 C 1.53242 * 108.52513 * 231.20989 * 11 10 8 13 13 N 1.46902 * 109.33872 * 306.17077 * 12 11 10 14 14 C 1.46893 * 111.00055 * 187.24948 * 13 12 11 15 15 C 1.50701 * 109.47116 * 170.00127 * 14 13 12 16 16 H 1.07991 * 119.99710 * 0.02562 * 15 14 13 17 17 C 1.37876 * 119.99825 * 180.02562 * 15 14 13 18 18 N 1.31515 * 120.00080 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 119.99934 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.47069 * 359.97438 * 19 17 15 21 21 H 1.48507 * 109.47322 * 120.00055 * 19 17 15 22 22 H 1.48501 * 109.47315 * 240.00246 * 19 17 15 23 23 C 1.46904 * 111.26559 * 63.10067 * 13 12 11 24 24 C 1.47075 * 120.88240 * 174.78282 * 10 8 7 25 25 C 1.39794 * 119.86659 * 0.26930 * 7 6 5 26 26 C 1.37610 * 119.92462 * 359.47168 * 25 7 6 27 27 H 1.08996 * 109.46813 * 269.99729 * 1 2 3 28 28 H 1.09003 * 109.47207 * 30.00093 * 1 2 3 29 29 H 1.09002 * 109.46647 * 149.99872 * 1 2 3 30 30 H 1.08991 * 109.47426 * 270.00083 * 3 2 1 31 31 H 1.09005 * 109.47071 * 30.00462 * 3 2 1 32 32 H 1.09006 * 109.46666 * 149.99818 * 3 2 1 33 33 H 1.08004 * 119.96185 * 0.02685 * 5 4 2 34 34 H 1.07997 * 120.03203 * 179.97438 * 6 5 4 35 35 H 1.09001 * 109.63064 * 111.49900 * 11 10 8 36 36 H 1.09007 * 109.63102 * 350.91741 * 11 10 8 37 37 H 1.08993 * 109.49658 * 186.20734 * 12 11 10 38 38 H 1.09003 * 109.49048 * 66.13161 * 12 11 10 39 39 H 1.09008 * 109.47204 * 290.00425 * 14 13 12 40 40 H 1.09003 * 109.46983 * 50.00038 * 14 13 12 41 41 H 0.97006 * 119.99941 * 180.02562 * 18 17 15 42 42 H 1.09008 * 109.49239 * 56.85994 * 23 13 12 43 43 H 1.08998 * 109.48914 * 176.90293 * 23 13 12 44 44 H 1.09006 * 109.62914 * 9.07218 * 24 10 8 45 45 H 1.08999 * 109.62637 * 248.50376 * 24 10 8 46 46 H 1.07997 * 120.04113 * 179.72963 * 25 7 6 47 47 H 1.08008 * 119.96077 * 180.25278 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.1603 -1.2041 -0.0005 5 6 1.4628 -2.4090 -0.0005 6 6 2.1480 -3.6024 -0.0005 7 6 3.5459 -3.6040 -0.0011 8 6 4.2836 -4.8816 -0.0017 9 8 3.8228 -5.8499 0.5716 10 7 5.4682 -4.9754 -0.6375 11 6 5.9894 -3.8531 -1.4323 12 6 6.3765 -4.3770 -2.8193 13 7 7.2961 -5.5130 -2.6710 14 6 7.8257 -5.9352 -3.9745 15 6 8.9404 -6.9277 -3.7662 16 1 9.2264 -7.2163 -2.7656 17 6 9.5950 -7.4674 -4.8531 18 7 9.2469 -7.1155 -6.0715 19 14 10.9771 -8.6971 -4.5949 20 1 11.1744 -8.9219 -3.1403 21 1 10.6258 -9.9819 -5.2517 22 1 12.2305 -8.1648 -5.1873 23 6 6.6497 -6.6347 -1.9769 24 6 6.2738 -6.2032 -0.5555 25 6 4.2434 -2.3925 0.0041 26 6 3.5525 -1.2025 -0.0013 27 1 -0.3633 0.0000 1.0276 28 1 -0.3634 0.8900 -0.5139 29 1 -0.3633 -0.8900 -0.5139 30 1 2.3791 1.5835 -1.0276 31 1 1.6084 2.0284 0.5139 32 1 3.1499 1.1384 0.5139 33 1 0.3828 -2.4071 -0.0006 34 1 1.6063 -4.5367 -0.0001 35 1 6.8674 -3.4333 -0.9413 36 1 5.2206 -3.0867 -1.5318 37 1 6.8663 -3.5839 -3.3841 38 1 5.4805 -4.7010 -3.3488 39 1 7.0298 -6.3995 -4.5569 40 1 8.2083 -5.0662 -4.5100 41 1 9.7072 -7.4955 -6.8362 42 1 5.7499 -6.9274 -2.5182 43 1 7.3374 -7.4791 -1.9314 44 1 5.6930 -6.9908 -0.0752 45 1 7.1790 -6.0095 0.0198 46 1 5.3234 -2.3905 0.0081 47 1 4.0908 -0.2662 -0.0015 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000603263322.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:31:06 Heat of formation + Delta-G solvation = 7.457131 kcal Electronic energy + Delta-G solvation = -26420.236832 eV Core-core repulsion = 22795.933229 eV Total energy + Delta-G solvation = -3624.303604 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.61886 -40.18902 -38.90766 -37.04802 -36.00307 -34.40764 -32.67612 -32.02449 -31.10442 -29.87091 -29.01769 -27.44457 -26.17417 -24.72726 -24.07878 -23.13342 -22.74986 -21.56543 -20.29693 -18.63671 -18.37547 -18.03038 -17.26219 -16.75796 -16.59900 -16.22202 -15.99972 -15.93875 -15.71794 -15.45425 -15.37043 -15.01348 -14.63815 -14.52665 -14.26772 -13.98326 -13.70175 -13.49145 -13.30512 -13.22109 -13.06773 -12.87812 -12.82550 -12.73332 -12.59519 -12.34031 -12.31776 -12.16594 -11.78555 -11.64565 -11.31011 -10.98334 -10.69318 -10.61525 -9.91237 -9.77732 -9.07845 -8.25812 -8.20922 -6.30743 0.13779 0.47479 1.41992 1.42622 1.56196 1.78395 2.00476 2.19777 2.40699 2.89330 3.11481 3.23990 3.56091 3.80795 3.92966 4.01742 4.05944 4.21996 4.24143 4.27081 4.39029 4.40747 4.41981 4.53516 4.55924 4.59567 4.69162 4.72416 4.82227 4.83150 4.91472 4.92228 4.94846 4.99717 5.08762 5.15925 5.21621 5.24367 5.31365 5.43473 5.56645 5.64498 5.75599 6.02489 6.20233 6.28237 6.42570 6.46356 6.57367 6.84972 7.12877 7.39029 8.90510 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.025394 B = 0.002553 C = 0.002418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1102.350187 B =10965.366889 C =11579.395528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.632 5.632 3 C 0.082 3.918 4 C 0.236 3.764 5 C -0.211 4.211 6 C -0.025 4.025 7 C -0.218 4.218 8 C 0.560 3.440 9 O -0.593 6.593 10 N -0.607 5.607 11 C 0.111 3.889 12 C 0.036 3.964 13 N -0.536 5.536 14 C 0.208 3.792 15 C -0.522 4.522 16 H 0.066 0.934 17 C 0.001 3.999 18 N -0.935 5.935 19 Si 0.969 3.031 20 H -0.262 1.262 21 H -0.281 1.281 22 H -0.277 1.277 23 C 0.057 3.943 24 C 0.126 3.874 25 C -0.039 4.039 26 C -0.207 4.207 27 H 0.057 0.943 28 H 0.086 0.914 29 H 0.071 0.929 30 H 0.057 0.943 31 H 0.085 0.915 32 H 0.076 0.924 33 H 0.145 0.855 34 H 0.119 0.881 35 H 0.096 0.904 36 H 0.120 0.880 37 H 0.092 0.908 38 H 0.013 0.987 39 H -0.044 1.044 40 H 0.012 0.988 41 H 0.264 0.736 42 H 0.006 0.994 43 H 0.082 0.918 44 H 0.085 0.915 45 H 0.086 0.914 46 H 0.148 0.852 47 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.213 19.670 13.509 28.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.340 5.340 3 C -0.060 4.060 4 C 0.130 3.870 5 C -0.234 4.234 6 C -0.045 4.045 7 C -0.223 4.223 8 C 0.353 3.647 9 O -0.475 6.475 10 N -0.339 5.339 11 C -0.011 4.011 12 C -0.093 4.093 13 N -0.261 5.261 14 C 0.082 3.918 15 C -0.560 4.560 16 H 0.084 0.916 17 C -0.197 4.197 18 N -0.576 5.576 19 Si 0.794 3.206 20 H -0.186 1.186 21 H -0.207 1.207 22 H -0.203 1.203 23 C -0.072 4.072 24 C 0.003 3.997 25 C -0.058 4.058 26 C -0.229 4.229 27 H 0.076 0.924 28 H 0.105 0.895 29 H 0.089 0.911 30 H 0.076 0.924 31 H 0.104 0.896 32 H 0.095 0.905 33 H 0.162 0.838 34 H 0.137 0.863 35 H 0.114 0.886 36 H 0.138 0.862 37 H 0.110 0.890 38 H 0.031 0.969 39 H -0.026 1.026 40 H 0.030 0.970 41 H 0.073 0.927 42 H 0.024 0.976 43 H 0.100 0.900 44 H 0.103 0.897 45 H 0.104 0.896 46 H 0.166 0.834 47 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -16.128 19.523 13.911 28.893 hybrid contribution -0.002 -1.395 -1.109 1.783 sum -16.130 18.128 12.802 27.435 Atomic orbital electron populations 1.21879 0.78141 1.03866 1.02132 1.46590 1.06294 1.03343 1.77821 1.21906 0.97842 0.84025 1.02243 1.18185 0.91738 0.86431 0.90608 1.20738 1.00665 0.90216 1.11758 1.20933 0.92301 0.98387 0.92879 1.19492 0.94469 0.92215 1.16107 1.18784 0.79946 0.88517 0.77488 1.90702 1.68548 1.40576 1.47697 1.48163 1.19756 1.16539 1.49417 1.22513 1.00561 0.88509 0.89507 1.22576 0.94215 0.94968 0.97540 1.62041 1.34550 1.07248 1.22240 1.19389 0.92922 0.94568 0.84918 1.21488 1.17185 1.24174 0.93138 0.91585 1.25915 1.00121 0.98957 0.94717 1.70093 1.43299 1.45398 0.98764 0.85328 0.78455 0.78110 0.78690 1.18580 1.20725 1.20307 1.22261 0.96220 0.94795 0.93915 1.21648 0.95070 0.87023 0.95939 1.21435 1.00738 0.90481 0.93108 1.20866 0.92041 0.99013 1.11007 0.92438 0.89535 0.91068 0.92435 0.89618 0.90514 0.83769 0.86338 0.88586 0.86218 0.88983 0.96868 1.02611 0.96958 0.92703 0.97586 0.89994 0.89692 0.89612 0.83407 0.82872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.62 10.18 127.77 1.30 1.92 16 2 N -0.63 -7.43 3.39 -747.28 -2.53 -9.97 16 3 C 0.08 0.56 10.17 127.77 1.30 1.86 16 4 C 0.24 4.00 6.55 38.47 0.25 4.25 16 5 C -0.21 -4.02 9.18 22.36 0.21 -3.82 16 6 C -0.03 -0.62 9.59 22.50 0.22 -0.41 16 7 C -0.22 -5.81 5.36 -20.08 -0.11 -5.92 16 8 C 0.56 18.78 7.41 86.69 0.64 19.42 16 9 O -0.59 -24.01 16.22 -4.02 -0.07 -24.07 16 10 N -0.61 -19.43 3.01 -821.72 -2.47 -21.90 16 11 C 0.11 2.99 4.87 86.35 0.42 3.41 16 12 C 0.04 1.26 5.62 86.38 0.49 1.74 16 13 N -0.54 -23.13 4.62 -899.81 -4.16 -27.28 16 14 C 0.21 11.11 4.72 85.56 0.40 11.52 16 15 C -0.52 -29.43 8.41 25.60 0.22 -29.21 16 16 H 0.07 3.64 7.13 -2.92 -0.02 3.61 16 17 C 0.00 0.05 5.46 84.65 0.46 0.51 16 18 N -0.93 -56.37 13.29 21.45 0.28 -56.08 16 19 Si 0.97 44.34 29.54 68.60 2.03 46.36 16 20 H -0.26 -11.47 7.11 99.48 0.71 -10.76 16 21 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 22 H -0.28 -12.33 7.11 99.48 0.71 -11.63 16 23 C 0.06 2.35 5.46 86.38 0.47 2.82 16 24 C 0.13 4.35 6.61 86.35 0.57 4.92 16 25 C -0.04 -0.78 7.36 22.50 0.17 -0.62 16 26 C -0.21 -3.41 9.18 22.36 0.21 -3.21 16 27 H 0.06 0.38 8.14 -2.39 -0.02 0.36 16 28 H 0.09 0.35 8.07 -2.39 -0.02 0.33 16 29 H 0.07 0.56 6.17 -2.39 -0.01 0.55 16 30 H 0.06 0.36 8.14 -2.39 -0.02 0.34 16 31 H 0.09 0.30 8.07 -2.38 -0.02 0.28 16 32 H 0.08 0.47 6.17 -2.38 -0.01 0.46 16 33 H 0.14 2.10 6.11 -2.91 -0.02 2.09 16 34 H 0.12 3.07 7.96 -2.91 -0.02 3.05 16 35 H 0.10 2.26 7.97 -2.39 -0.02 2.24 16 36 H 0.12 2.66 4.50 -2.38 -0.01 2.65 16 37 H 0.09 3.00 7.99 -2.39 -0.02 2.98 16 38 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 39 H -0.04 -2.60 8.13 -2.38 -0.02 -2.62 16 40 H 0.01 0.70 7.97 -2.39 -0.02 0.68 16 41 H 0.26 14.94 8.31 -92.70 -0.77 14.17 16 42 H 0.01 0.26 8.14 -2.38 -0.02 0.24 16 43 H 0.08 3.56 6.67 -2.39 -0.02 3.55 16 44 H 0.08 3.01 7.04 -2.38 -0.02 2.99 16 45 H 0.09 2.74 8.14 -2.39 -0.02 2.73 16 46 H 0.15 2.57 5.75 -2.91 -0.02 2.55 16 47 H 0.15 1.70 6.11 -2.91 -0.02 1.68 16 Total: -1.00 -73.95 368.34 1.26 -72.70 By element: Atomic # 1 Polarization: 10.10 SS G_CDS: 0.97 Total: 11.06 kcal Atomic # 6 Polarization: 1.98 SS G_CDS: 7.21 Total: 9.19 kcal Atomic # 7 Polarization: -106.35 SS G_CDS: -8.88 Total: -115.23 kcal Atomic # 8 Polarization: -24.01 SS G_CDS: -0.07 Total: -24.07 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 2.03 Total: 46.36 kcal Total: -73.95 1.26 -72.70 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603263322.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.153 kcal (2) G-P(sol) polarization free energy of solvation -73.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.696 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds