Wall clock time and date at job start Tue Mar 31 2020 11:50:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46497 * 120.00495 * 2 1 4 4 C 1.50696 * 109.47468 * 270.00115 * 3 2 1 5 5 O 1.21287 * 119.99701 * 0.02562 * 4 3 2 6 6 N 1.34774 * 120.00326 * 179.97438 * 4 3 2 7 7 C 1.46498 * 120.00360 * 180.02562 * 6 4 3 8 8 C 1.53071 * 109.44009 * 84.79625 * 7 6 4 9 9 C 1.53201 * 109.29371 * 181.23934 * 8 7 6 10 10 N 1.46928 * 108.89275 * 305.57634 * 9 8 7 11 11 C 1.36934 * 120.63265 * 233.51651 * 10 9 8 12 12 H 1.07997 * 119.99862 * 151.82898 * 11 10 9 13 13 C 1.38806 * 120.00015 * 331.83027 * 11 10 9 14 14 N 1.31624 * 120.00191 * 343.08772 * 13 11 10 15 15 Si 1.86800 * 120.00146 * 163.08448 * 13 11 10 16 16 H 1.48503 * 109.47142 * 60.00161 * 15 13 11 17 17 H 1.48498 * 109.47084 * 180.02562 * 15 13 11 18 18 H 1.48500 * 109.47267 * 300.00095 * 15 13 11 19 19 C 1.46932 * 118.73342 * 53.53882 * 10 9 8 20 20 C 1.53045 * 109.46092 * 205.00269 * 7 6 4 21 21 C 1.39679 * 119.99443 * 180.02562 * 2 1 3 22 22 C 1.38913 * 120.07109 * 179.71947 * 21 2 1 23 23 C 1.38107 * 119.92255 * 179.76874 * 22 21 2 24 24 C 1.38286 * 120.07612 * 0.50606 * 23 22 21 25 25 C 1.38287 * 120.14675 * 359.75420 * 24 23 22 26 26 C 1.38100 * 120.07588 * 359.97438 * 25 24 23 27 27 H 1.08996 * 109.47294 * 89.99387 * 1 2 3 28 28 H 1.08996 * 109.47249 * 210.00144 * 1 2 3 29 29 H 1.09001 * 109.46970 * 329.99723 * 1 2 3 30 30 H 1.09003 * 109.47196 * 150.00351 * 3 2 1 31 31 H 1.08999 * 109.46605 * 30.00498 * 3 2 1 32 32 H 0.97005 * 119.99791 * 0.02562 * 6 4 3 33 33 H 1.08998 * 109.45866 * 324.97703 * 7 6 4 34 34 H 1.09002 * 109.39343 * 61.36176 * 8 7 6 35 35 H 1.09003 * 109.62467 * 301.25403 * 8 7 6 36 36 H 1.09000 * 109.58250 * 185.72113 * 9 8 7 37 37 H 1.08995 * 109.58477 * 65.43833 * 9 8 7 38 38 H 0.96995 * 120.00379 * 180.02562 * 14 13 11 39 39 H 1.08996 * 109.59017 * 66.18099 * 19 10 9 40 40 H 1.09009 * 109.58200 * 186.46074 * 19 10 9 41 41 H 1.09002 * 109.49555 * 58.67538 * 20 7 6 42 42 H 1.08992 * 109.52043 * 298.59539 * 20 7 6 43 43 H 1.08002 * 120.04018 * 0.02562 * 22 21 2 44 44 H 1.07997 * 119.96311 * 180.25769 * 23 22 21 45 45 H 1.07999 * 119.92700 * 179.72354 * 24 23 22 46 46 H 1.08004 * 119.96226 * 179.97438 * 25 24 23 47 47 H 1.08008 * 120.04017 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2686 0.0000 4 6 2.4488 1.7037 -1.4207 5 8 2.0542 1.0214 -2.3426 6 7 3.1109 2.8515 -1.6670 7 6 3.3547 3.2747 -3.0482 8 6 2.1326 4.0334 -3.5717 9 6 2.3787 4.4475 -5.0260 10 7 3.6376 5.2015 -5.0995 11 6 3.6746 6.4431 -5.6760 12 1 4.4094 7.1661 -5.3541 13 6 2.7677 6.7722 -6.6739 14 7 2.1036 5.8231 -7.2989 15 14 2.4896 8.5622 -7.1299 16 1 3.7674 9.1588 -7.5955 17 1 1.4796 8.6453 -8.2153 18 1 2.0004 9.3057 -5.9412 19 6 4.8561 4.5978 -4.5431 20 6 4.5841 4.1851 -3.0931 21 6 2.1632 -1.2097 -0.0005 22 6 3.5524 -1.2116 -0.0064 23 6 4.2397 -2.4095 -0.0021 24 6 3.5467 -3.6061 -0.0025 25 6 2.1638 -3.6078 -0.0021 26 6 1.4702 -2.4136 -0.0008 27 1 -0.3633 0.0001 -1.0276 28 1 -0.3633 -0.8899 0.5138 29 1 -0.3633 0.8900 0.5139 30 1 3.1500 1.1382 0.5138 31 1 1.6085 2.0282 0.5139 32 1 3.4262 3.3973 -0.9297 33 1 3.5293 2.3976 -3.6713 34 1 1.9705 4.9228 -2.9626 35 1 1.2533 3.3914 -3.5200 36 1 1.5566 5.0744 -5.3715 37 1 2.4483 3.5582 -5.6523 38 1 1.4702 6.0531 -7.9965 39 1 5.1287 3.7194 -5.1280 40 1 5.6694 5.3231 -4.5723 41 1 5.4479 3.6496 -2.6991 42 1 4.4011 5.0742 -2.4899 43 1 4.0943 -0.2774 -0.0102 44 1 5.3197 -2.4117 -0.0025 45 1 4.0866 -4.5415 -0.0037 46 1 1.6255 -4.5442 -0.0028 47 1 0.3902 -2.4156 -0.0009 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609332474.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:50:27 Heat of formation + Delta-G solvation = 25.309418 kcal Electronic energy + Delta-G solvation = -26521.189335 eV Core-core repulsion = 22897.659865 eV Total energy + Delta-G solvation = -3623.529470 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.17228 -39.14371 -37.40043 -35.97785 -34.37215 -32.22791 -31.26779 -30.38474 -29.97898 -29.58420 -28.46457 -25.53277 -24.65966 -22.54387 -22.25257 -21.99336 -21.03946 -20.13058 -19.26950 -17.88939 -17.26329 -16.68710 -16.16895 -15.73022 -15.32253 -14.99569 -14.78961 -14.42476 -14.26417 -13.87107 -13.73352 -13.54988 -13.52500 -13.26459 -12.94877 -12.69767 -12.66638 -12.39840 -12.21326 -11.95740 -11.52746 -11.49175 -11.13554 -10.94091 -10.90492 -10.72815 -10.41721 -10.33709 -10.26204 -10.06240 -9.76774 -9.74323 -9.39709 -8.98054 -8.70693 -8.42605 -7.41077 -6.69016 -5.79017 -3.22498 1.38229 1.54869 2.77035 2.78981 3.37373 3.43626 3.44341 3.47182 3.86664 4.48660 4.66595 4.71021 4.83596 4.89989 4.99572 5.08132 5.13964 5.29866 5.34739 5.39163 5.40879 5.44845 5.51570 5.62381 5.65308 5.65986 5.82041 5.91933 6.07018 6.16257 6.23119 6.34961 6.41304 6.42509 6.57080 6.59658 6.64023 6.74959 6.76794 6.90307 6.93487 7.04592 7.34761 7.36422 7.66440 7.73294 7.78484 8.42362 8.44814 9.20270 9.83546 10.40493 11.29532 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.026850 B = 0.002532 C = 0.002465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1042.596389 B =11056.750013 C =11357.600230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.095 3.905 2 N -0.612 5.612 3 C 0.104 3.896 4 C 0.483 3.517 5 O -0.524 6.524 6 N -0.726 5.726 7 C 0.152 3.848 8 C -0.145 4.145 9 C 0.174 3.826 10 N -0.592 5.592 11 C -0.256 4.256 12 H 0.065 0.935 13 C 0.003 3.997 14 N -0.902 5.902 15 Si 0.903 3.097 16 H -0.282 1.282 17 H -0.290 1.290 18 H -0.284 1.284 19 C 0.148 3.852 20 C -0.138 4.138 21 C 0.226 3.774 22 C -0.195 4.195 23 C -0.072 4.072 24 C -0.183 4.183 25 C -0.074 4.074 26 C -0.196 4.196 27 H 0.054 0.946 28 H 0.069 0.931 29 H 0.065 0.935 30 H 0.102 0.898 31 H 0.103 0.897 32 H 0.394 0.606 33 H 0.079 0.921 34 H 0.053 0.947 35 H 0.051 0.949 36 H 0.089 0.911 37 H 0.020 0.980 38 H 0.255 0.745 39 H 0.020 0.980 40 H 0.058 0.942 41 H 0.055 0.945 42 H 0.062 0.938 43 H 0.117 0.883 44 H 0.119 0.881 45 H 0.115 0.885 46 H 0.118 0.882 47 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.381 -13.262 19.843 23.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.321 5.321 3 C -0.024 4.024 4 C 0.266 3.734 5 O -0.399 6.399 6 N -0.378 5.378 7 C 0.048 3.952 8 C -0.185 4.185 9 C 0.048 3.952 10 N -0.315 5.315 11 C -0.385 4.385 12 H 0.083 0.917 13 C -0.196 4.196 14 N -0.546 5.546 15 Si 0.733 3.267 16 H -0.208 1.208 17 H -0.216 1.216 18 H -0.211 1.211 19 C 0.021 3.979 20 C -0.178 4.178 21 C 0.125 3.875 22 C -0.217 4.217 23 C -0.091 4.091 24 C -0.203 4.203 25 C -0.093 4.093 26 C -0.218 4.218 27 H 0.072 0.928 28 H 0.088 0.912 29 H 0.084 0.916 30 H 0.120 0.880 31 H 0.121 0.879 32 H 0.227 0.773 33 H 0.098 0.902 34 H 0.072 0.928 35 H 0.070 0.930 36 H 0.107 0.893 37 H 0.038 0.962 38 H 0.065 0.935 39 H 0.037 0.963 40 H 0.077 0.923 41 H 0.073 0.927 42 H 0.081 0.919 43 H 0.135 0.865 44 H 0.137 0.863 45 H 0.133 0.867 46 H 0.136 0.864 47 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -0.152 -13.583 19.005 23.360 hybrid contribution -0.073 1.285 -0.059 1.288 sum -0.225 -12.298 18.946 22.588 Atomic orbital electron populations 1.21671 0.79003 1.02252 1.01878 1.45911 1.04914 1.01868 1.79455 1.21337 0.99424 0.87124 0.94493 1.21390 0.78566 0.81237 0.92198 1.90733 1.49646 1.53661 1.45896 1.46368 1.58163 1.23569 1.09695 1.21018 0.95918 0.97386 0.80847 1.22548 0.96203 0.98573 1.01186 1.20741 0.90286 0.95125 0.89093 1.44090 1.02198 1.17499 1.67720 1.19127 1.17103 0.88751 1.13537 0.91684 1.25074 1.01115 0.97492 0.95932 1.70027 1.29315 1.30673 1.24537 0.86364 0.77718 0.84965 0.77665 1.20847 1.21626 1.21059 1.20840 0.90668 0.96323 0.90079 1.22320 0.95829 0.98520 1.01101 1.17775 0.91157 0.85507 0.93110 1.20640 0.92173 0.98603 1.10258 1.20866 0.99384 0.91991 0.96881 1.20876 0.94284 0.97734 1.07405 1.20862 0.94249 0.97070 0.97119 1.20657 0.99614 0.91088 1.10432 0.92775 0.91215 0.91593 0.87983 0.87919 0.77341 0.90241 0.92772 0.93023 0.89329 0.96226 0.93505 0.96258 0.92338 0.92670 0.91877 0.86546 0.86342 0.86658 0.86372 0.86113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.89 10.23 59.85 0.61 1.50 16 2 N -0.61 -6.88 2.50 -181.01 -0.45 -7.33 16 3 C 0.10 1.02 5.68 -5.20 -0.03 1.00 16 4 C 0.48 6.82 7.86 -10.99 -0.09 6.73 16 5 O -0.52 -10.04 16.09 5.55 0.09 -9.95 16 6 N -0.73 -9.65 5.08 -53.75 -0.27 -9.93 16 7 C 0.15 2.62 2.41 -67.87 -0.16 2.46 16 8 C -0.14 -2.89 5.66 -26.59 -0.15 -3.04 16 9 C 0.17 4.27 5.30 -3.71 -0.02 4.25 16 10 N -0.59 -14.84 3.00 -172.31 -0.52 -15.35 16 11 C -0.26 -6.99 9.58 -15.06 -0.14 -7.13 16 12 H 0.07 1.73 7.88 -52.49 -0.41 1.31 16 13 C 0.00 0.08 4.92 -17.43 -0.09 -0.01 16 14 N -0.90 -26.48 11.20 55.49 0.62 -25.86 16 15 Si 0.90 21.65 29.59 -169.99 -5.03 16.63 16 16 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 17 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 18 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 19 C 0.15 3.05 6.52 -3.71 -0.02 3.03 16 20 C -0.14 -2.26 5.55 -26.61 -0.15 -2.41 16 21 C 0.23 2.76 6.55 -83.78 -0.55 2.21 16 22 C -0.19 -2.30 9.20 -39.38 -0.36 -2.67 16 23 C -0.07 -0.78 10.04 -39.61 -0.40 -1.18 16 24 C -0.18 -1.88 10.04 -39.55 -0.40 -2.28 16 25 C -0.07 -0.77 10.04 -39.61 -0.40 -1.16 16 26 C -0.20 -2.20 9.21 -39.38 -0.36 -2.57 16 27 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.07 0.54 6.20 -51.93 -0.32 0.21 16 29 H 0.07 0.49 7.89 -51.93 -0.41 0.08 16 30 H 0.10 0.80 6.21 -51.93 -0.32 0.48 16 31 H 0.10 0.74 7.89 -51.93 -0.41 0.33 16 32 H 0.39 3.88 8.60 -40.82 -0.35 3.53 16 33 H 0.08 1.59 7.58 -51.93 -0.39 1.20 16 34 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 35 H 0.05 1.05 8.14 -51.93 -0.42 0.62 16 36 H 0.09 2.42 6.06 -51.93 -0.31 2.11 16 37 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 39 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.06 1.16 7.93 -51.92 -0.41 0.75 16 41 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 43 H 0.12 1.26 6.15 -52.49 -0.32 0.94 16 44 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 45 H 0.12 0.95 8.06 -52.49 -0.42 0.52 16 46 H 0.12 0.94 8.06 -52.48 -0.42 0.51 16 47 H 0.12 1.17 6.14 -52.48 -0.32 0.85 16 LS Contribution 375.58 15.07 5.66 5.66 Total: -1.00 -33.83 375.58 -9.96 -43.79 By element: Atomic # 1 Polarization: 10.96 SS G_CDS: -7.36 Total: 3.61 kcal Atomic # 6 Polarization: 1.44 SS G_CDS: -2.71 Total: -1.26 kcal Atomic # 7 Polarization: -57.85 SS G_CDS: -0.62 Total: -58.47 kcal Atomic # 8 Polarization: -10.04 SS G_CDS: 0.09 Total: -9.95 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.03 Total: 16.63 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -33.83 -9.96 -43.79 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609332474.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.101 kcal (2) G-P(sol) polarization free energy of solvation -33.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.791 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds