Wall clock time and date at job start Tue Mar 31 2020 11:50:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46497 * 120.00495 * 2 1 4 4 C 1.50696 * 109.47468 * 270.00115 * 3 2 1 5 5 O 1.21287 * 119.99701 * 0.02562 * 4 3 2 6 6 N 1.34774 * 120.00326 * 179.97438 * 4 3 2 7 7 C 1.46498 * 120.00360 * 180.02562 * 6 4 3 8 8 C 1.53071 * 109.44009 * 84.79625 * 7 6 4 9 9 C 1.53201 * 109.29371 * 181.23934 * 8 7 6 10 10 N 1.46928 * 108.89275 * 305.57634 * 9 8 7 11 11 C 1.36934 * 120.63265 * 233.51651 * 10 9 8 12 12 H 1.07997 * 119.99862 * 151.82898 * 11 10 9 13 13 C 1.38806 * 120.00015 * 331.83027 * 11 10 9 14 14 N 1.31624 * 120.00191 * 343.08772 * 13 11 10 15 15 Si 1.86800 * 120.00146 * 163.08448 * 13 11 10 16 16 H 1.48503 * 109.47142 * 60.00161 * 15 13 11 17 17 H 1.48498 * 109.47084 * 180.02562 * 15 13 11 18 18 H 1.48500 * 109.47267 * 300.00095 * 15 13 11 19 19 C 1.46932 * 118.73342 * 53.53882 * 10 9 8 20 20 C 1.53045 * 109.46092 * 205.00269 * 7 6 4 21 21 C 1.39679 * 119.99443 * 180.02562 * 2 1 3 22 22 C 1.38913 * 120.07109 * 179.71947 * 21 2 1 23 23 C 1.38107 * 119.92255 * 179.76874 * 22 21 2 24 24 C 1.38286 * 120.07612 * 0.50606 * 23 22 21 25 25 C 1.38287 * 120.14675 * 359.75420 * 24 23 22 26 26 C 1.38100 * 120.07588 * 359.97438 * 25 24 23 27 27 H 1.08996 * 109.47294 * 89.99387 * 1 2 3 28 28 H 1.08996 * 109.47249 * 210.00144 * 1 2 3 29 29 H 1.09001 * 109.46970 * 329.99723 * 1 2 3 30 30 H 1.09003 * 109.47196 * 150.00351 * 3 2 1 31 31 H 1.08999 * 109.46605 * 30.00498 * 3 2 1 32 32 H 0.97005 * 119.99791 * 0.02562 * 6 4 3 33 33 H 1.08998 * 109.45866 * 324.97703 * 7 6 4 34 34 H 1.09002 * 109.39343 * 61.36176 * 8 7 6 35 35 H 1.09003 * 109.62467 * 301.25403 * 8 7 6 36 36 H 1.09000 * 109.58250 * 185.72113 * 9 8 7 37 37 H 1.08995 * 109.58477 * 65.43833 * 9 8 7 38 38 H 0.96995 * 120.00379 * 180.02562 * 14 13 11 39 39 H 1.08996 * 109.59017 * 66.18099 * 19 10 9 40 40 H 1.09009 * 109.58200 * 186.46074 * 19 10 9 41 41 H 1.09002 * 109.49555 * 58.67538 * 20 7 6 42 42 H 1.08992 * 109.52043 * 298.59539 * 20 7 6 43 43 H 1.08002 * 120.04018 * 0.02562 * 22 21 2 44 44 H 1.07997 * 119.96311 * 180.25769 * 23 22 21 45 45 H 1.07999 * 119.92700 * 179.72354 * 24 23 22 46 46 H 1.08004 * 119.96226 * 179.97438 * 25 24 23 47 47 H 1.08008 * 120.04017 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2686 0.0000 4 6 2.4488 1.7037 -1.4207 5 8 2.0542 1.0214 -2.3426 6 7 3.1109 2.8515 -1.6670 7 6 3.3547 3.2747 -3.0482 8 6 2.1326 4.0334 -3.5717 9 6 2.3787 4.4475 -5.0260 10 7 3.6376 5.2015 -5.0995 11 6 3.6746 6.4431 -5.6760 12 1 4.4094 7.1661 -5.3541 13 6 2.7677 6.7722 -6.6739 14 7 2.1036 5.8231 -7.2989 15 14 2.4896 8.5622 -7.1299 16 1 3.7674 9.1588 -7.5955 17 1 1.4796 8.6453 -8.2153 18 1 2.0004 9.3057 -5.9412 19 6 4.8561 4.5978 -4.5431 20 6 4.5841 4.1851 -3.0931 21 6 2.1632 -1.2097 -0.0005 22 6 3.5524 -1.2116 -0.0064 23 6 4.2397 -2.4095 -0.0021 24 6 3.5467 -3.6061 -0.0025 25 6 2.1638 -3.6078 -0.0021 26 6 1.4702 -2.4136 -0.0008 27 1 -0.3633 0.0001 -1.0276 28 1 -0.3633 -0.8899 0.5138 29 1 -0.3633 0.8900 0.5139 30 1 3.1500 1.1382 0.5138 31 1 1.6085 2.0282 0.5139 32 1 3.4262 3.3973 -0.9297 33 1 3.5293 2.3976 -3.6713 34 1 1.9705 4.9228 -2.9626 35 1 1.2533 3.3914 -3.5200 36 1 1.5566 5.0744 -5.3715 37 1 2.4483 3.5582 -5.6523 38 1 1.4702 6.0531 -7.9965 39 1 5.1287 3.7194 -5.1280 40 1 5.6694 5.3231 -4.5723 41 1 5.4479 3.6496 -2.6991 42 1 4.4011 5.0742 -2.4899 43 1 4.0943 -0.2774 -0.0102 44 1 5.3197 -2.4117 -0.0025 45 1 4.0866 -4.5415 -0.0037 46 1 1.6255 -4.5442 -0.0028 47 1 0.3902 -2.4156 -0.0009 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609332474.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:50:26 Heat of formation + Delta-G solvation = 4.286332 kcal Electronic energy + Delta-G solvation = -26522.100964 eV Core-core repulsion = 22897.659865 eV Total energy + Delta-G solvation = -3624.441100 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.21314 -40.16052 -38.92604 -36.88217 -35.93328 -33.95793 -32.20222 -31.80133 -31.42070 -30.76522 -29.44134 -27.00503 -25.90421 -23.95948 -23.81890 -23.08585 -22.05006 -21.33460 -20.79807 -18.89809 -18.66376 -18.08618 -17.34731 -16.81887 -16.54674 -16.23067 -16.02823 -15.69607 -15.38702 -15.30054 -15.11847 -14.83974 -14.56691 -14.45948 -14.29101 -14.08652 -14.05485 -13.45872 -13.21707 -13.02991 -12.92812 -12.78957 -12.63703 -12.57063 -12.26402 -12.14487 -12.09356 -11.88396 -11.67108 -11.55242 -11.43606 -11.25011 -10.59191 -10.53516 -9.97774 -9.78540 -8.73866 -8.23093 -7.89041 -5.36188 0.57688 0.73224 1.46637 1.49315 1.56257 1.68573 1.95144 2.44367 2.50437 3.04862 3.26742 3.62797 3.80772 3.91658 3.94300 4.01921 4.07947 4.17111 4.31011 4.31976 4.40423 4.42640 4.45249 4.63177 4.64314 4.65621 4.74670 4.78450 4.85710 4.87778 4.91923 5.04013 5.06007 5.11165 5.17684 5.29445 5.37370 5.43574 5.57830 5.62056 5.63644 5.66838 5.77867 5.99761 6.24133 6.36505 6.53629 6.69952 7.11173 7.37075 7.82086 8.35204 9.17919 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.026850 B = 0.002532 C = 0.002465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1042.596389 B =11056.750013 C =11357.600230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -0.619 5.619 3 C 0.110 3.890 4 C 0.481 3.519 5 O -0.581 6.581 6 N -0.710 5.710 7 C 0.164 3.836 8 C -0.127 4.127 9 C 0.183 3.817 10 N -0.609 5.609 11 C -0.263 4.263 12 H 0.075 0.925 13 C -0.056 4.056 14 N -0.940 5.940 15 Si 0.971 3.029 16 H -0.272 1.272 17 H -0.298 1.298 18 H -0.275 1.275 19 C 0.140 3.860 20 C -0.120 4.120 21 C 0.205 3.795 22 C -0.212 4.212 23 C -0.083 4.083 24 C -0.191 4.191 25 C -0.081 4.081 26 C -0.212 4.212 27 H 0.026 0.974 28 H 0.084 0.916 29 H 0.089 0.911 30 H 0.128 0.872 31 H 0.139 0.861 32 H 0.416 0.584 33 H 0.047 0.953 34 H 0.064 0.936 35 H 0.041 0.959 36 H 0.054 0.946 37 H -0.017 1.017 38 H 0.249 0.751 39 H 0.007 0.993 40 H 0.068 0.932 41 H 0.091 0.909 42 H 0.078 0.922 43 H 0.123 0.877 44 H 0.136 0.864 45 H 0.135 0.865 46 H 0.139 0.861 47 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.504 -12.721 22.898 26.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 N -0.328 5.328 3 C -0.018 4.018 4 C 0.266 3.734 5 O -0.459 6.459 6 N -0.363 5.363 7 C 0.058 3.942 8 C -0.167 4.167 9 C 0.057 3.943 10 N -0.333 5.333 11 C -0.393 4.393 12 H 0.093 0.907 13 C -0.251 4.251 14 N -0.586 5.586 15 Si 0.799 3.201 16 H -0.198 1.198 17 H -0.224 1.224 18 H -0.201 1.201 19 C 0.014 3.986 20 C -0.159 4.159 21 C 0.103 3.897 22 C -0.235 4.235 23 C -0.101 4.101 24 C -0.211 4.211 25 C -0.100 4.100 26 C -0.234 4.234 27 H 0.045 0.955 28 H 0.102 0.898 29 H 0.108 0.892 30 H 0.146 0.854 31 H 0.156 0.844 32 H 0.254 0.746 33 H 0.066 0.934 34 H 0.082 0.918 35 H 0.060 0.940 36 H 0.073 0.927 37 H 0.001 0.999 38 H 0.058 0.942 39 H 0.025 0.975 40 H 0.087 0.913 41 H 0.109 0.891 42 H 0.097 0.903 43 H 0.141 0.859 44 H 0.154 0.846 45 H 0.153 0.847 46 H 0.157 0.843 47 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 1.012 -13.029 22.135 25.705 hybrid contribution -0.380 1.019 -1.041 1.506 sum 0.632 -12.010 21.094 24.282 Atomic orbital electron populations 1.21751 0.78405 1.04191 1.00664 1.46114 1.05521 1.02028 1.79163 1.21519 1.01384 0.87464 0.91390 1.22316 0.77014 0.80389 0.93632 1.90723 1.51828 1.55323 1.48068 1.46061 1.57902 1.23825 1.08515 1.20574 0.94993 0.95913 0.82700 1.22274 0.97336 0.99008 0.98131 1.20443 0.89547 0.92897 0.91462 1.44345 1.03615 1.17310 1.68001 1.19550 1.16819 0.89872 1.13039 0.90735 1.25916 1.01357 1.01477 0.96311 1.70212 1.30274 1.32765 1.25384 0.85284 0.77559 0.80067 0.77201 1.19777 1.22432 1.20082 1.21056 0.89281 0.95881 0.92371 1.22112 0.96516 0.99167 0.98121 1.18064 0.91677 0.86260 0.93660 1.20859 0.92328 0.99365 1.10902 1.21181 1.00488 0.91964 0.96504 1.21209 0.94562 0.98529 1.06828 1.21200 0.94633 0.97740 0.96415 1.20922 1.00335 0.91394 1.10725 0.95538 0.89778 0.89237 0.85422 0.84372 0.74639 0.93427 0.91769 0.94007 0.92734 0.99873 0.94179 0.97511 0.91320 0.89062 0.90316 0.85899 0.84595 0.84703 0.84271 0.85250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.63 10.23 127.77 1.31 2.93 16 2 N -0.62 -12.94 2.50 -726.59 -1.81 -14.75 16 3 C 0.11 1.84 5.68 85.63 0.49 2.33 16 4 C 0.48 12.84 7.86 87.66 0.69 13.53 16 5 O -0.58 -22.48 16.09 -3.05 -0.05 -22.53 16 6 N -0.71 -17.10 5.08 -442.36 -2.25 -19.35 16 7 C 0.16 5.49 2.41 45.03 0.11 5.60 16 8 C -0.13 -5.12 5.66 30.69 0.17 -4.94 16 9 C 0.18 9.39 5.30 86.37 0.46 9.85 16 10 N -0.61 -30.92 3.00 -699.07 -2.09 -33.01 16 11 C -0.26 -14.41 9.58 84.03 0.81 -13.61 16 12 H 0.08 3.88 7.88 -2.91 -0.02 3.85 16 13 C -0.06 -3.14 4.92 84.86 0.42 -2.73 16 14 N -0.94 -57.44 11.20 21.65 0.24 -57.20 16 15 Si 0.97 44.97 29.59 68.60 2.03 47.00 16 16 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16 17 H -0.30 -14.03 7.11 99.48 0.71 -13.32 16 18 H -0.27 -12.21 7.11 99.48 0.71 -11.51 16 19 C 0.14 5.66 6.52 86.36 0.56 6.23 16 20 C -0.12 -3.61 5.55 30.67 0.17 -3.44 16 21 C 0.20 4.79 6.55 38.21 0.25 5.04 16 22 C -0.21 -4.75 9.20 22.40 0.21 -4.55 16 23 C -0.08 -1.67 10.04 22.25 0.22 -1.45 16 24 C -0.19 -3.65 10.04 22.29 0.22 -3.43 16 25 C -0.08 -1.58 10.04 22.25 0.22 -1.35 16 26 C -0.21 -4.60 9.21 22.40 0.21 -4.39 16 27 H 0.03 0.60 8.14 -2.39 -0.02 0.58 16 28 H 0.08 1.19 6.20 -2.39 -0.01 1.18 16 29 H 0.09 1.11 7.89 -2.39 -0.02 1.09 16 30 H 0.13 1.53 6.21 -2.39 -0.01 1.52 16 31 H 0.14 1.38 7.89 -2.39 -0.02 1.36 16 32 H 0.42 6.44 8.60 -92.70 -0.80 5.65 16 33 H 0.05 1.94 7.58 -2.39 -0.02 1.92 16 34 H 0.06 2.45 8.14 -2.39 -0.02 2.43 16 35 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 36 H 0.05 3.14 6.06 -2.39 -0.01 3.13 16 37 H -0.02 -0.96 8.14 -2.39 -0.02 -0.98 16 38 H 0.25 14.79 8.31 -92.71 -0.77 14.02 16 39 H 0.01 0.29 8.14 -2.39 -0.02 0.28 16 40 H 0.07 2.61 7.93 -2.38 -0.02 2.59 16 41 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 42 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 43 H 0.12 2.43 6.15 -2.91 -0.02 2.41 16 44 H 0.14 2.12 8.06 -2.91 -0.02 2.09 16 45 H 0.14 1.94 8.06 -2.91 -0.02 1.91 16 46 H 0.14 1.97 8.06 -2.91 -0.02 1.94 16 47 H 0.13 2.42 6.14 -2.91 -0.02 2.40 16 Total: -1.00 -77.69 375.58 2.75 -74.94 By element: Atomic # 1 Polarization: 19.11 SS G_CDS: 0.17 Total: 19.28 kcal Atomic # 6 Polarization: -0.88 SS G_CDS: 6.51 Total: 5.63 kcal Atomic # 7 Polarization: -118.40 SS G_CDS: -5.91 Total: -124.31 kcal Atomic # 8 Polarization: -22.48 SS G_CDS: -0.05 Total: -22.53 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 2.03 Total: 47.00 kcal Total: -77.69 2.75 -74.94 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609332474.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.227 kcal (2) G-P(sol) polarization free energy of solvation -77.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.940 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds