Wall clock time and date at job start Tue Mar 31 2020 11:55:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34776 * 120.00238 * 2 1 4 4 O 1.21554 * 120.00048 * 0.02562 * 3 2 1 5 5 C 1.47849 * 119.99898 * 180.02562 * 3 2 1 6 6 C 1.39580 * 120.13963 * 180.02562 * 5 3 2 7 7 C 1.37953 * 119.84920 * 180.02562 * 6 5 3 8 8 C 1.38364 * 120.14746 * 0.02562 * 7 6 5 9 9 C 1.50694 * 119.85570 * 179.97438 * 8 7 6 10 10 N 1.46898 * 109.47311 * 89.99788 * 9 8 7 11 11 C 1.46910 * 111.00021 * 180.02562 * 10 9 8 12 12 C 1.53041 * 109.45585 * 275.02718 * 11 10 9 13 13 C 1.53194 * 109.31066 * 178.60173 * 12 11 10 14 14 N 1.46921 * 108.76439 * 54.65537 * 13 12 11 15 15 C 1.36940 * 120.62960 * 126.36198 * 14 13 12 16 16 H 1.07996 * 120.00366 * 331.85887 * 15 14 13 17 17 C 1.38821 * 119.99960 * 151.85950 * 15 14 13 18 18 N 1.31611 * 119.99884 * 343.07009 * 17 15 14 19 19 Si 1.86793 * 120.00071 * 163.07315 * 17 15 14 20 20 H 1.48507 * 109.47028 * 59.99831 * 19 17 15 21 21 H 1.48500 * 109.47187 * 179.97438 * 19 17 15 22 22 H 1.48501 * 109.47150 * 300.00116 * 19 17 15 23 23 C 1.46923 * 118.74047 * 306.38245 * 14 13 12 24 24 C 1.53042 * 109.45935 * 154.97598 * 11 10 9 25 25 C 1.38352 * 120.29113 * 0.23465 * 8 7 6 26 26 C 1.37967 * 120.14488 * 359.48777 * 25 8 7 27 27 H 1.09003 * 109.46632 * 299.99849 * 1 2 3 28 28 H 1.08992 * 109.47346 * 59.99541 * 1 2 3 29 29 H 1.08993 * 109.47358 * 180.02562 * 1 2 3 30 30 H 0.97004 * 120.00099 * 180.02562 * 2 1 3 31 31 H 1.07998 * 120.07764 * 359.97438 * 6 5 3 32 32 H 1.08003 * 119.93184 * 179.97438 * 7 6 5 33 33 H 1.09006 * 109.47348 * 329.99975 * 9 8 7 34 34 H 1.09005 * 109.47586 * 210.00033 * 9 8 7 35 35 H 1.00902 * 111.00154 * 303.95427 * 10 9 8 36 36 H 1.08993 * 109.46176 * 34.99541 * 11 10 9 37 37 H 1.09002 * 109.50089 * 298.56875 * 12 11 10 38 38 H 1.09004 * 109.50020 * 58.66138 * 12 11 10 39 39 H 1.09000 * 109.59886 * 294.86934 * 13 12 11 40 40 H 1.09000 * 109.70309 * 174.50438 * 13 12 11 41 41 H 0.96998 * 120.00046 * 179.97438 * 18 17 15 42 42 H 1.08994 * 109.59070 * 293.82315 * 23 14 13 43 43 H 1.08997 * 109.70734 * 173.46389 * 23 14 13 44 44 H 1.09000 * 109.49508 * 301.33023 * 24 11 10 45 45 H 1.09003 * 109.49825 * 61.39715 * 24 11 10 46 46 H 1.08001 * 119.93039 * 179.74380 * 25 8 7 47 47 H 1.08000 * 120.07404 * 180.25458 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5312 2.2199 0.0005 5 6 3.6174 1.1671 -0.0006 6 6 4.3183 2.3741 0.0000 7 6 5.6979 2.3671 -0.0011 8 6 6.3866 1.1670 -0.0033 9 6 7.8935 1.1670 -0.0050 10 7 8.3849 1.1655 1.3794 11 6 9.8535 1.1660 1.4168 12 6 10.3668 -0.2711 1.3016 13 6 11.8987 -0.2637 1.3059 14 7 12.3646 0.4490 2.5032 15 6 13.2510 -0.1398 3.3650 16 1 13.2766 -1.2151 3.4621 17 6 14.1167 0.6454 4.1140 18 7 14.3301 1.8986 3.7732 19 14 14.9789 -0.0766 5.6055 20 1 15.8142 -1.2300 5.1843 21 1 15.8430 0.9588 6.2272 22 1 13.9655 -0.5329 6.5904 23 6 11.8611 1.8055 2.7585 24 6 10.3296 1.7749 2.7377 25 6 5.6979 -0.0329 -0.0092 26 6 4.3182 -0.0399 -0.0024 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 1.9500 -0.8401 -0.0004 31 1 3.7820 3.3115 0.0004 32 1 6.2415 3.3003 -0.0011 33 1 8.2564 2.0576 -0.5183 34 1 8.2563 0.2775 -0.5203 35 1 8.0100 1.9463 1.8970 36 1 10.2377 1.7565 0.5852 37 1 10.0033 -0.8562 2.1464 38 1 10.0079 -0.7123 0.3718 39 1 12.2644 0.2437 0.4132 40 1 12.2711 -1.2880 1.3224 41 1 14.9348 2.4474 4.2967 42 1 12.2236 2.4816 1.9843 43 1 12.2064 2.1482 3.7339 44 1 9.9442 2.7903 2.8300 45 1 9.9659 1.1707 3.5689 46 1 6.2414 -0.9661 -0.0151 47 1 3.7818 -0.9772 -0.0029 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609334780.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:55:49 Heat of formation + Delta-G solvation = 8.631743 kcal Electronic energy + Delta-G solvation = -25548.623555 eV Core-core repulsion = 21924.370887 eV Total energy + Delta-G solvation = -3624.252669 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.48521 -38.94788 -37.88762 -35.26239 -35.04585 -32.82392 -31.39454 -31.22203 -30.00509 -29.17466 -27.45195 -25.62879 -24.25234 -22.84607 -22.55694 -21.91920 -21.20931 -20.55119 -19.08382 -18.57381 -16.82798 -16.53556 -15.94894 -15.56982 -15.28889 -15.18533 -15.03427 -14.63622 -14.49683 -14.00283 -13.81835 -13.51421 -13.49170 -13.42232 -13.13639 -12.73566 -12.70342 -12.56444 -12.31118 -12.05804 -11.61149 -11.36384 -11.28168 -10.98060 -10.75703 -10.68772 -10.35197 -10.30787 -10.20748 -9.93691 -9.61442 -9.59382 -9.49444 -9.24094 -9.00484 -8.46108 -8.22836 -6.66223 -5.78158 -3.20213 0.55971 1.13971 2.56466 2.81599 3.39209 3.44882 3.46498 3.57994 4.29641 4.43315 4.48090 4.50848 4.67727 4.74970 4.83621 5.06472 5.08740 5.12090 5.33531 5.36276 5.38772 5.43587 5.47198 5.54260 5.68344 5.70968 5.78221 5.91703 5.93815 6.01705 6.08105 6.14457 6.33719 6.35871 6.46090 6.51997 6.61700 6.63751 6.66250 6.81823 7.03627 7.06087 7.29024 7.36953 7.55005 7.65865 7.80502 7.83706 8.46355 9.22431 9.86028 10.42942 11.30596 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.031528 B = 0.002007 C = 0.001991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 887.884549 B =13949.065773 C =14057.097438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.734 5.734 3 C 0.560 3.440 4 O -0.539 6.539 5 C -0.145 4.145 6 C -0.058 4.058 7 C -0.123 4.123 8 C -0.045 4.045 9 C 0.091 3.909 10 N -0.682 5.682 11 C 0.096 3.904 12 C -0.116 4.116 13 C 0.144 3.856 14 N -0.591 5.591 15 C -0.251 4.251 16 H 0.065 0.935 17 C 0.001 3.999 18 N -0.904 5.904 19 Si 0.903 3.097 20 H -0.283 1.283 21 H -0.291 1.291 22 H -0.284 1.284 23 C 0.174 3.826 24 C -0.141 4.141 25 C -0.105 4.105 26 C -0.087 4.087 27 H 0.061 0.939 28 H 0.060 0.940 29 H 0.076 0.924 30 H 0.402 0.598 31 H 0.134 0.866 32 H 0.128 0.872 33 H 0.039 0.961 34 H 0.083 0.917 35 H 0.338 0.662 36 H 0.037 0.963 37 H 0.064 0.936 38 H 0.045 0.955 39 H 0.014 0.986 40 H 0.054 0.946 41 H 0.254 0.746 42 H 0.016 0.984 43 H 0.089 0.911 44 H 0.045 0.955 45 H 0.063 0.937 46 H 0.132 0.868 47 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.206 -3.592 -9.702 25.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.386 5.386 3 C 0.348 3.652 4 O -0.416 6.416 5 C -0.148 4.148 6 C -0.077 4.077 7 C -0.142 4.142 8 C -0.046 4.046 9 C -0.038 4.038 10 N -0.313 5.313 11 C -0.013 4.013 12 C -0.156 4.156 13 C 0.017 3.983 14 N -0.314 5.314 15 C -0.381 4.381 16 H 0.083 0.917 17 C -0.197 4.197 18 N -0.549 5.549 19 Si 0.733 3.267 20 H -0.209 1.209 21 H -0.217 1.217 22 H -0.210 1.210 23 C 0.047 3.953 24 C -0.181 4.181 25 C -0.124 4.124 26 C -0.106 4.106 27 H 0.079 0.921 28 H 0.079 0.921 29 H 0.095 0.905 30 H 0.237 0.763 31 H 0.152 0.848 32 H 0.146 0.854 33 H 0.057 0.943 34 H 0.101 0.899 35 H 0.156 0.844 36 H 0.055 0.945 37 H 0.083 0.917 38 H 0.064 0.936 39 H 0.032 0.968 40 H 0.073 0.927 41 H 0.064 0.936 42 H 0.034 0.966 43 H 0.107 0.893 44 H 0.064 0.936 45 H 0.082 0.918 46 H 0.150 0.850 47 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -23.581 -3.408 -9.554 25.670 hybrid contribution 0.814 0.167 0.507 0.974 sum -22.766 -3.241 -9.047 24.712 Atomic orbital electron populations 1.21555 0.79225 1.02354 1.02499 1.45722 1.07913 1.08734 1.76235 1.18389 0.87439 0.83628 0.75754 1.90770 1.70061 1.31198 1.49621 1.19833 0.92245 0.94750 1.07999 1.21209 0.93797 0.97576 0.95119 1.21103 0.93824 0.98082 1.01143 1.20158 0.95949 0.93036 0.95467 1.21010 0.89434 1.01664 0.91643 1.60687 1.09415 1.49991 1.11228 1.21510 0.84609 0.97271 0.97869 1.22009 0.97878 0.95319 1.00432 1.20927 0.91093 0.96405 0.89839 1.44034 1.49967 1.14563 1.22846 1.19152 1.11092 0.91502 1.16342 0.91746 1.25047 0.97289 0.96617 1.00771 1.70014 1.38166 1.07583 1.39131 0.86366 0.79138 0.78057 0.83186 1.20898 1.21671 1.21016 1.20733 0.86684 0.86151 1.01714 1.22408 1.01143 0.98323 0.96186 1.21011 0.93437 0.98292 0.99641 1.21238 0.94621 0.96569 0.98125 0.92062 0.92095 0.90502 0.76293 0.84789 0.85388 0.94267 0.89879 0.84413 0.94520 0.91733 0.93611 0.96803 0.92716 0.93609 0.96598 0.89319 0.93630 0.91799 0.85041 0.85844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.50 10.70 59.85 0.64 1.14 16 2 N -0.73 -5.25 5.66 -68.05 -0.39 -5.63 16 3 C 0.56 6.02 7.77 -12.33 -0.10 5.93 16 4 O -0.54 -7.70 16.35 5.32 0.09 -7.62 16 5 C -0.14 -1.46 5.87 -104.97 -0.62 -2.08 16 6 C -0.06 -0.61 9.60 -39.19 -0.38 -0.98 16 7 C -0.12 -1.22 9.68 -39.64 -0.38 -1.60 16 8 C -0.05 -0.47 5.40 -104.54 -0.56 -1.03 16 9 C 0.09 1.03 5.60 -4.98 -0.03 1.00 16 10 N -0.68 -9.20 6.30 -107.94 -0.68 -9.88 16 11 C 0.10 1.57 2.46 -67.66 -0.17 1.40 16 12 C -0.12 -2.02 5.59 -26.61 -0.15 -2.17 16 13 C 0.14 3.01 6.52 -3.71 -0.02 2.98 16 14 N -0.59 -14.75 2.99 -172.33 -0.52 -15.27 16 15 C -0.25 -6.89 9.58 -15.05 -0.14 -7.03 16 16 H 0.06 1.73 7.88 -52.49 -0.41 1.32 16 17 C 0.00 0.03 4.92 -17.43 -0.09 -0.05 16 18 N -0.90 -26.18 11.19 55.49 0.62 -25.56 16 19 Si 0.90 21.68 29.59 -169.99 -5.03 16.65 16 20 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 21 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 22 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 23 C 0.17 4.10 5.30 -3.71 -0.02 4.08 16 24 C -0.14 -2.63 5.36 -26.61 -0.14 -2.77 16 25 C -0.11 -0.98 9.68 -39.64 -0.38 -1.37 16 26 C -0.09 -0.72 9.54 -39.18 -0.37 -1.09 16 27 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 29 H 0.08 0.20 8.14 -51.93 -0.42 -0.22 16 30 H 0.40 1.76 6.86 -40.82 -0.28 1.48 16 31 H 0.13 1.39 7.65 -52.49 -0.40 0.99 16 32 H 0.13 1.10 8.06 -52.48 -0.42 0.68 16 33 H 0.04 0.43 8.00 -51.93 -0.42 0.02 16 34 H 0.08 0.93 7.35 -51.93 -0.38 0.55 16 35 H 0.34 4.37 8.32 -39.29 -0.33 4.05 16 36 H 0.04 0.62 7.80 -51.93 -0.40 0.21 16 37 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 38 H 0.05 0.69 7.42 -51.93 -0.39 0.30 16 39 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 40 H 0.05 1.12 7.93 -51.93 -0.41 0.71 16 41 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 42 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 43 H 0.09 2.35 6.06 -51.93 -0.31 2.04 16 44 H 0.05 0.76 8.10 -51.93 -0.42 0.34 16 45 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 46 H 0.13 1.09 8.06 -52.49 -0.42 0.67 16 47 H 0.12 0.63 6.41 -52.49 -0.34 0.30 16 LS Contribution 378.19 15.07 5.70 5.70 Total: -1.00 -32.39 378.19 -10.55 -42.94 By element: Atomic # 1 Polarization: 9.77 SS G_CDS: -7.43 Total: 2.33 kcal Atomic # 6 Polarization: -0.75 SS G_CDS: -2.91 Total: -3.66 kcal Atomic # 7 Polarization: -55.38 SS G_CDS: -0.96 Total: -56.34 kcal Atomic # 8 Polarization: -7.70 SS G_CDS: 0.09 Total: -7.62 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.03 Total: 16.65 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -32.39 -10.55 -42.94 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609334780.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.567 kcal (2) G-P(sol) polarization free energy of solvation -32.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.935 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds