Wall clock time and date at job start Tue Mar 31 2020 11:55:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34776 * 120.00238 * 2 1 4 4 O 1.21554 * 120.00048 * 0.02562 * 3 2 1 5 5 C 1.47849 * 119.99898 * 180.02562 * 3 2 1 6 6 C 1.39580 * 120.13963 * 180.02562 * 5 3 2 7 7 C 1.37953 * 119.84920 * 180.02562 * 6 5 3 8 8 C 1.38364 * 120.14746 * 0.02562 * 7 6 5 9 9 C 1.50694 * 119.85570 * 179.97438 * 8 7 6 10 10 N 1.46898 * 109.47311 * 89.99788 * 9 8 7 11 11 C 1.46910 * 111.00021 * 180.02562 * 10 9 8 12 12 C 1.53041 * 109.45585 * 275.02718 * 11 10 9 13 13 C 1.53194 * 109.31066 * 178.60173 * 12 11 10 14 14 N 1.46921 * 108.76439 * 54.65537 * 13 12 11 15 15 C 1.36940 * 120.62960 * 126.36198 * 14 13 12 16 16 H 1.07996 * 120.00366 * 331.85887 * 15 14 13 17 17 C 1.38821 * 119.99960 * 151.85950 * 15 14 13 18 18 N 1.31611 * 119.99884 * 343.07009 * 17 15 14 19 19 Si 1.86793 * 120.00071 * 163.07315 * 17 15 14 20 20 H 1.48507 * 109.47028 * 59.99831 * 19 17 15 21 21 H 1.48500 * 109.47187 * 179.97438 * 19 17 15 22 22 H 1.48501 * 109.47150 * 300.00116 * 19 17 15 23 23 C 1.46923 * 118.74047 * 306.38245 * 14 13 12 24 24 C 1.53042 * 109.45935 * 154.97598 * 11 10 9 25 25 C 1.38352 * 120.29113 * 0.23465 * 8 7 6 26 26 C 1.37967 * 120.14488 * 359.48777 * 25 8 7 27 27 H 1.09003 * 109.46632 * 299.99849 * 1 2 3 28 28 H 1.08992 * 109.47346 * 59.99541 * 1 2 3 29 29 H 1.08993 * 109.47358 * 180.02562 * 1 2 3 30 30 H 0.97004 * 120.00099 * 180.02562 * 2 1 3 31 31 H 1.07998 * 120.07764 * 359.97438 * 6 5 3 32 32 H 1.08003 * 119.93184 * 179.97438 * 7 6 5 33 33 H 1.09006 * 109.47348 * 329.99975 * 9 8 7 34 34 H 1.09005 * 109.47586 * 210.00033 * 9 8 7 35 35 H 1.00902 * 111.00154 * 303.95427 * 10 9 8 36 36 H 1.08993 * 109.46176 * 34.99541 * 11 10 9 37 37 H 1.09002 * 109.50089 * 298.56875 * 12 11 10 38 38 H 1.09004 * 109.50020 * 58.66138 * 12 11 10 39 39 H 1.09000 * 109.59886 * 294.86934 * 13 12 11 40 40 H 1.09000 * 109.70309 * 174.50438 * 13 12 11 41 41 H 0.96998 * 120.00046 * 179.97438 * 18 17 15 42 42 H 1.08994 * 109.59070 * 293.82315 * 23 14 13 43 43 H 1.08997 * 109.70734 * 173.46389 * 23 14 13 44 44 H 1.09000 * 109.49508 * 301.33023 * 24 11 10 45 45 H 1.09003 * 109.49825 * 61.39715 * 24 11 10 46 46 H 1.08001 * 119.93039 * 179.74380 * 25 8 7 47 47 H 1.08000 * 120.07404 * 180.25458 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5312 2.2199 0.0005 5 6 3.6174 1.1671 -0.0006 6 6 4.3183 2.3741 0.0000 7 6 5.6979 2.3671 -0.0011 8 6 6.3866 1.1670 -0.0033 9 6 7.8935 1.1670 -0.0050 10 7 8.3849 1.1655 1.3794 11 6 9.8535 1.1660 1.4168 12 6 10.3668 -0.2711 1.3016 13 6 11.8987 -0.2637 1.3059 14 7 12.3646 0.4490 2.5032 15 6 13.2510 -0.1398 3.3650 16 1 13.2766 -1.2151 3.4621 17 6 14.1167 0.6454 4.1140 18 7 14.3301 1.8986 3.7732 19 14 14.9789 -0.0766 5.6055 20 1 15.8142 -1.2300 5.1843 21 1 15.8430 0.9588 6.2272 22 1 13.9655 -0.5329 6.5904 23 6 11.8611 1.8055 2.7585 24 6 10.3296 1.7749 2.7377 25 6 5.6979 -0.0329 -0.0092 26 6 4.3182 -0.0399 -0.0024 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 1.9500 -0.8401 -0.0004 31 1 3.7820 3.3115 0.0004 32 1 6.2415 3.3003 -0.0011 33 1 8.2564 2.0576 -0.5183 34 1 8.2563 0.2775 -0.5203 35 1 8.0100 1.9463 1.8970 36 1 10.2377 1.7565 0.5852 37 1 10.0033 -0.8562 2.1464 38 1 10.0079 -0.7123 0.3718 39 1 12.2644 0.2437 0.4132 40 1 12.2711 -1.2880 1.3224 41 1 14.9348 2.4474 4.2967 42 1 12.2236 2.4816 1.9843 43 1 12.2064 2.1482 3.7339 44 1 9.9442 2.7903 2.8300 45 1 9.9659 1.1707 3.5689 46 1 6.2414 -0.9661 -0.0151 47 1 3.7818 -0.9772 -0.0029 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609334780.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:55:48 Heat of formation + Delta-G solvation = -12.992744 kcal Electronic energy + Delta-G solvation = -25549.561263 eV Core-core repulsion = 21924.370887 eV Total energy + Delta-G solvation = -3625.190377 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.24566 -39.90688 -39.21384 -36.66180 -35.76893 -34.32744 -32.78792 -31.94529 -31.56830 -30.66151 -28.26038 -26.87063 -25.69923 -23.90112 -23.58656 -23.18296 -22.62249 -21.31187 -20.68084 -19.26729 -18.71334 -17.28382 -17.00410 -16.84167 -16.30082 -16.09917 -15.98693 -15.83597 -15.56095 -15.43519 -15.29480 -14.79515 -14.67099 -14.32081 -14.10378 -14.02273 -13.80923 -13.49123 -13.26704 -13.12464 -13.03888 -12.96747 -12.57899 -12.49852 -12.26665 -12.12251 -11.97317 -11.92539 -11.73765 -11.26303 -11.14918 -11.10623 -10.52181 -10.28372 -9.94472 -9.78766 -9.32047 -8.66987 -7.86638 -5.31578 -0.19946 0.43128 1.47415 1.49971 1.56657 1.77746 2.20362 2.52450 2.80652 3.25343 3.37621 3.66557 3.72126 3.81120 3.91064 4.01862 4.04132 4.17584 4.30691 4.40756 4.47067 4.48405 4.57544 4.60886 4.66494 4.69534 4.73538 4.87751 4.90298 4.94094 5.00755 5.06588 5.08458 5.13035 5.27992 5.28457 5.36248 5.36896 5.43889 5.55272 5.61471 5.66201 5.75381 5.90708 6.12881 6.40542 6.46690 6.47716 7.14096 7.16220 7.88035 8.39468 9.19710 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.031528 B = 0.002007 C = 0.001991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 887.884549 B =13949.065773 C =14057.097438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.718 5.718 3 C 0.553 3.447 4 O -0.585 6.585 5 C -0.155 4.155 6 C -0.074 4.074 7 C -0.125 4.125 8 C -0.053 4.053 9 C 0.095 3.905 10 N -0.679 5.679 11 C 0.107 3.893 12 C -0.103 4.103 13 C 0.139 3.861 14 N -0.611 5.611 15 C -0.262 4.262 16 H 0.066 0.934 17 C -0.052 4.052 18 N -0.936 5.936 19 Si 0.967 3.033 20 H -0.275 1.275 21 H -0.295 1.295 22 H -0.279 1.279 23 C 0.179 3.821 24 C -0.127 4.127 25 C -0.109 4.109 26 C -0.076 4.076 27 H 0.050 0.950 28 H 0.052 0.948 29 H 0.114 0.886 30 H 0.418 0.582 31 H 0.125 0.875 32 H 0.136 0.864 33 H 0.044 0.956 34 H 0.089 0.911 35 H 0.343 0.657 36 H 0.035 0.965 37 H 0.054 0.946 38 H 0.076 0.924 39 H 0.012 0.988 40 H 0.054 0.946 41 H 0.250 0.750 42 H -0.005 1.005 43 H 0.053 0.947 44 H 0.065 0.935 45 H 0.053 0.947 46 H 0.147 0.853 47 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.732 -5.732 -10.216 27.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.370 5.370 3 C 0.342 3.658 4 O -0.467 6.467 5 C -0.158 4.158 6 C -0.093 4.093 7 C -0.144 4.144 8 C -0.054 4.054 9 C -0.034 4.034 10 N -0.310 5.310 11 C -0.002 4.002 12 C -0.142 4.142 13 C 0.014 3.986 14 N -0.334 5.334 15 C -0.392 4.392 16 H 0.083 0.917 17 C -0.247 4.247 18 N -0.582 5.582 19 Si 0.795 3.205 20 H -0.200 1.200 21 H -0.221 1.221 22 H -0.205 1.205 23 C 0.053 3.947 24 C -0.167 4.167 25 C -0.127 4.127 26 C -0.095 4.095 27 H 0.069 0.931 28 H 0.071 0.929 29 H 0.133 0.867 30 H 0.255 0.745 31 H 0.143 0.857 32 H 0.154 0.846 33 H 0.062 0.938 34 H 0.107 0.893 35 H 0.161 0.839 36 H 0.053 0.947 37 H 0.072 0.928 38 H 0.095 0.905 39 H 0.030 0.970 40 H 0.073 0.927 41 H 0.059 0.941 42 H 0.013 0.987 43 H 0.071 0.929 44 H 0.084 0.916 45 H 0.072 0.928 46 H 0.164 0.836 47 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -25.138 -5.611 -10.089 27.662 hybrid contribution 1.233 0.791 0.599 1.583 sum -23.905 -4.819 -9.490 26.167 Atomic orbital electron populations 1.21726 0.78221 1.04559 1.01591 1.45676 1.08654 1.08380 1.74310 1.18610 0.87831 0.83936 0.75429 1.90745 1.70874 1.32939 1.52099 1.19945 0.92080 0.95410 1.08393 1.21263 0.94200 0.97767 0.96028 1.21181 0.93595 0.98609 1.00993 1.20125 0.95361 0.93561 0.96347 1.21017 0.90042 1.02181 0.90127 1.60586 1.07144 1.50342 1.12948 1.21238 0.86562 0.96303 0.96081 1.21817 0.94862 0.96017 1.01541 1.21093 0.93636 0.95779 0.88138 1.44313 1.50017 1.15022 1.24069 1.19484 1.11178 0.91784 1.16798 0.91658 1.25802 0.98469 0.97072 1.03398 1.70170 1.39071 1.08796 1.40151 0.85352 0.78034 0.77276 0.79863 1.20050 1.22072 1.20481 1.20537 0.89902 0.85360 0.98945 1.22161 0.97272 0.99745 0.97477 1.21253 0.93919 0.98483 0.99058 1.21530 0.94422 0.97172 0.96353 0.93117 0.92935 0.86710 0.74456 0.85669 0.84569 0.93833 0.89267 0.83877 0.94689 0.92758 0.90538 0.96977 0.92733 0.94142 0.98653 0.92856 0.91595 0.92785 0.83556 0.82417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.79 10.70 127.77 1.37 2.15 16 2 N -0.72 -8.72 5.66 -487.48 -2.76 -11.48 16 3 C 0.55 11.41 7.77 86.79 0.67 12.08 16 4 O -0.58 -17.00 16.35 -3.88 -0.06 -17.06 16 5 C -0.15 -2.90 5.87 -20.09 -0.12 -3.02 16 6 C -0.07 -1.50 9.60 22.53 0.22 -1.29 16 7 C -0.13 -2.32 9.68 22.23 0.22 -2.10 16 8 C -0.05 -0.96 5.40 -19.81 -0.11 -1.07 16 9 C 0.09 1.85 5.60 85.56 0.48 2.33 16 10 N -0.68 -16.51 6.30 -495.42 -3.12 -19.63 16 11 C 0.11 3.30 2.46 44.94 0.11 3.41 16 12 C -0.10 -3.34 5.59 30.67 0.17 -3.16 16 13 C 0.14 5.70 6.52 86.36 0.56 6.26 16 14 N -0.61 -30.74 2.99 -699.12 -2.09 -32.83 16 15 C -0.26 -14.51 9.58 84.04 0.81 -13.71 16 16 H 0.07 3.52 7.88 -2.91 -0.02 3.50 16 17 C -0.05 -2.93 4.92 84.87 0.42 -2.52 16 18 N -0.94 -55.63 11.19 21.65 0.24 -55.39 16 19 Si 0.97 45.05 29.59 68.60 2.03 47.08 16 20 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 21 H -0.29 -13.78 7.11 99.48 0.71 -13.08 16 22 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 23 C 0.18 8.61 5.30 86.36 0.46 9.07 16 24 C -0.13 -4.66 5.36 30.67 0.16 -4.49 16 25 C -0.11 -1.68 9.68 22.23 0.22 -1.46 16 26 C -0.08 -1.03 9.54 22.53 0.21 -0.82 16 27 H 0.05 0.61 8.14 -2.39 -0.02 0.60 16 28 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 29 H 0.11 0.22 8.14 -2.39 -0.02 0.20 16 30 H 0.42 2.24 6.86 -92.71 -0.64 1.60 16 31 H 0.13 2.70 7.65 -2.91 -0.02 2.68 16 32 H 0.14 2.18 8.06 -2.91 -0.02 2.16 16 33 H 0.04 0.84 8.00 -2.38 -0.02 0.82 16 34 H 0.09 1.66 7.35 -2.38 -0.02 1.65 16 35 H 0.34 8.03 8.32 -89.69 -0.75 7.28 16 36 H 0.04 1.11 7.80 -2.39 -0.02 1.09 16 37 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 38 H 0.08 2.04 7.42 -2.39 -0.02 2.02 16 39 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 40 H 0.05 2.19 7.93 -2.39 -0.02 2.17 16 41 H 0.25 14.40 8.31 -92.71 -0.77 13.63 16 42 H 0.00 -0.24 8.14 -2.39 -0.02 -0.25 16 43 H 0.05 2.93 6.06 -2.39 -0.01 2.91 16 44 H 0.07 2.12 8.10 -2.39 -0.02 2.11 16 45 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 46 H 0.15 1.83 8.06 -2.91 -0.02 1.81 16 47 H 0.16 0.92 6.41 -2.91 -0.02 0.90 16 Total: -1.00 -72.06 378.19 -0.32 -72.38 By element: Atomic # 1 Polarization: 15.64 SS G_CDS: -0.41 Total: 15.24 kcal Atomic # 6 Polarization: -4.17 SS G_CDS: 5.85 Total: 1.68 kcal Atomic # 7 Polarization: -111.59 SS G_CDS: -7.73 Total: -119.32 kcal Atomic # 8 Polarization: -17.00 SS G_CDS: -0.06 Total: -17.06 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 2.03 Total: 47.08 kcal Total: -72.06 -0.32 -72.38 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609334780.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.392 kcal (2) G-P(sol) polarization free energy of solvation -72.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.385 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds