Wall clock time and date at job start Tue Mar 31 2020 11:31:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46500 * 120.00311 * 2 1 4 4 C 1.50696 * 109.47206 * 90.00085 * 3 2 1 5 5 C 1.38241 * 119.99678 * 269.72742 * 4 3 2 6 6 C 1.38241 * 119.99671 * 179.76779 * 5 4 3 7 7 C 1.38237 * 119.99912 * 0.50220 * 6 5 4 8 8 C 1.38232 * 120.00085 * 359.75279 * 7 6 5 9 9 C 1.38229 * 120.00296 * 89.99627 * 4 3 2 10 10 C 1.34783 * 119.99800 * 179.97438 * 2 1 3 11 11 O 1.21578 * 120.00168 * 179.97438 * 10 2 1 12 12 N 1.34784 * 119.99781 * 0.02562 * 10 2 1 13 13 C 1.46496 * 119.99640 * 180.02562 * 12 10 2 14 14 C 1.53045 * 109.45995 * 275.02245 * 13 12 10 15 15 C 1.53188 * 109.31496 * 178.60034 * 14 13 12 16 16 N 1.46932 * 108.76113 * 54.65865 * 15 14 13 17 17 C 1.36939 * 120.62728 * 126.40645 * 16 15 14 18 18 H 1.07997 * 120.00228 * 332.60062 * 17 16 15 19 19 C 1.38812 * 119.99659 * 152.60870 * 17 16 15 20 20 N 1.31621 * 120.00063 * 159.34211 * 19 17 16 21 21 Si 1.86802 * 120.00351 * 339.34103 * 19 17 16 22 22 H 1.48497 * 109.47194 * 92.94314 * 21 19 17 23 23 H 1.48495 * 109.47180 * 212.94551 * 21 19 17 24 24 H 1.48506 * 109.46525 * 332.94391 * 21 19 17 25 25 C 1.46924 * 118.73877 * 306.37960 * 16 15 14 26 26 C 1.53038 * 109.45966 * 154.97362 * 13 12 10 27 27 H 1.08996 * 109.47111 * 89.99729 * 1 2 3 28 28 H 1.08997 * 109.47126 * 210.00652 * 1 2 3 29 29 H 1.09002 * 109.47055 * 330.00274 * 1 2 3 30 30 H 1.09005 * 109.46904 * 210.00172 * 3 2 1 31 31 H 1.08999 * 109.46577 * 329.99616 * 3 2 1 32 32 H 1.08001 * 120.00005 * 359.97438 * 5 4 3 33 33 H 1.07999 * 119.99393 * 180.23352 * 6 5 4 34 34 H 1.08003 * 119.99650 * 179.72260 * 7 6 5 35 35 H 1.08000 * 120.00089 * 179.97438 * 8 7 6 36 36 H 1.08001 * 120.00393 * 0.02562 * 9 4 3 37 37 H 0.96996 * 119.99936 * 359.97438 * 12 10 2 38 38 H 1.09002 * 109.46409 * 34.99585 * 13 12 10 39 39 H 1.08994 * 109.49712 * 298.57400 * 14 13 12 40 40 H 1.09008 * 109.49357 * 58.66658 * 14 13 12 41 41 H 1.08998 * 109.60269 * 294.87460 * 15 14 13 42 42 H 1.09001 * 109.70407 * 174.50320 * 15 14 13 43 43 H 0.96998 * 120.00413 * 179.97438 * 20 19 17 44 44 H 1.08991 * 109.58734 * 293.82415 * 25 16 15 45 45 H 1.09005 * 109.69972 * 173.46356 * 25 16 15 46 46 H 1.09000 * 109.49686 * 301.33053 * 26 13 12 47 47 H 1.08997 * 109.50376 * 61.43063 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4488 1.7037 1.4208 5 6 1.5299 2.5065 2.0705 6 6 1.7580 2.9017 3.3754 7 6 2.9100 2.5025 4.0271 8 6 3.8313 1.7041 3.3756 9 6 3.6006 1.3046 2.0725 10 6 2.1389 -1.1673 0.0005 11 8 3.3547 -1.1674 0.0001 12 7 1.4649 -2.3345 0.0005 13 6 2.1973 -3.6032 0.0017 14 6 2.5628 -3.9822 -1.4354 15 6 3.3587 -5.2911 -1.4274 16 7 2.5808 -6.3128 -0.7133 17 6 2.3087 -7.5195 -1.3008 18 1 2.2512 -7.5956 -2.3765 19 6 2.1067 -8.6448 -0.5135 20 7 1.4623 -9.6831 -1.0026 21 14 2.7493 -8.6857 1.2400 22 1 1.6846 -8.2273 2.1682 23 1 3.1468 -10.0731 1.5893 24 1 3.9273 -7.7890 1.3564 25 6 2.1010 -6.0154 0.6432 26 6 1.3195 -4.6982 0.6119 27 1 -0.3633 0.0000 -1.0276 28 1 -0.3633 -0.8899 0.5139 29 1 -0.3633 0.8900 0.5138 30 1 3.1500 1.1383 -0.5139 31 1 1.6085 2.0283 -0.5139 32 1 0.6322 2.8223 1.5597 33 1 1.0383 3.5257 3.8843 34 1 3.0903 2.8149 5.0451 35 1 4.7315 1.3926 3.8846 36 1 4.3208 0.6813 1.5633 37 1 0.4949 -2.3344 0.0005 38 1 3.1076 -3.4965 0.5917 39 1 1.6522 -4.1134 -2.0198 40 1 3.1685 -3.1910 -1.8774 41 1 4.3112 -5.1367 -0.9205 42 1 3.5384 -5.6182 -2.4515 43 1 1.3214 -10.4695 -0.4526 44 1 2.9509 -5.9201 1.3187 45 1 1.4493 -6.8188 0.9868 46 1 1.0401 -4.4168 1.6272 47 1 0.4206 -4.8227 0.0080 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609336669.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:31:26 Heat of formation + Delta-G solvation = 29.253996 kcal Electronic energy + Delta-G solvation = -26773.242338 eV Core-core repulsion = 23149.883918 eV Total energy + Delta-G solvation = -3623.358420 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.43870 -39.22849 -37.79839 -35.65040 -34.58884 -32.47597 -31.63512 -31.07941 -30.39525 -29.85748 -27.56125 -26.06504 -24.55494 -22.88705 -22.72873 -22.05290 -21.43205 -19.90260 -19.58046 -18.05320 -17.10887 -16.79080 -16.41527 -15.88903 -15.36317 -15.22109 -15.06880 -14.39877 -14.13499 -13.96561 -13.83942 -13.65989 -13.54419 -13.13732 -13.02904 -12.85971 -12.81693 -12.59218 -12.37453 -12.06071 -11.93732 -11.74394 -11.44682 -11.15585 -10.93350 -10.79774 -10.51935 -10.25318 -10.17140 -9.99773 -9.74557 -9.45268 -9.10869 -9.03763 -8.93150 -8.62191 -8.56613 -6.97505 -5.94063 -3.29592 1.07213 1.22210 2.67566 3.27323 3.32196 3.49969 3.53743 3.63770 3.98495 4.53949 4.57202 4.60412 4.80099 4.80712 4.90039 4.97923 4.99865 5.18463 5.20187 5.28223 5.35893 5.38172 5.44362 5.45978 5.51884 5.71506 5.78565 5.85839 5.86921 6.07045 6.13156 6.16866 6.23963 6.25091 6.33776 6.39440 6.44766 6.46173 6.60137 6.67678 6.68116 6.78781 6.81587 6.88787 7.02527 7.97330 7.99490 8.34060 8.67284 8.95182 9.73082 10.11080 11.21979 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.022512 B = 0.002853 C = 0.002723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1243.484727 B = 9810.581758 C =10278.631096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.633 5.633 3 C 0.173 3.827 4 C -0.107 4.107 5 C -0.109 4.109 6 C -0.128 4.128 7 C -0.119 4.119 8 C -0.124 4.124 9 C -0.091 4.091 10 C 0.706 3.294 11 O -0.587 6.587 12 N -0.739 5.739 13 C 0.168 3.832 14 C -0.140 4.140 15 C 0.151 3.849 16 N -0.606 5.606 17 C -0.258 4.258 18 H 0.086 0.914 19 C 0.022 3.978 20 N -0.909 5.909 21 Si 0.881 3.119 22 H -0.289 1.289 23 H -0.303 1.303 24 H -0.270 1.270 25 C 0.130 3.870 26 C -0.140 4.140 27 H 0.056 0.944 28 H 0.067 0.933 29 H 0.071 0.929 30 H 0.093 0.907 31 H 0.083 0.917 32 H 0.118 0.882 33 H 0.119 0.881 34 H 0.119 0.881 35 H 0.121 0.879 36 H 0.130 0.870 37 H 0.392 0.608 38 H 0.082 0.918 39 H 0.061 0.939 40 H 0.059 0.941 41 H 0.025 0.975 42 H 0.065 0.935 43 H 0.262 0.738 44 H 0.027 0.973 45 H 0.076 0.924 46 H 0.058 0.942 47 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.840 26.686 6.248 27.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.370 5.370 3 C 0.050 3.950 4 C -0.108 4.108 5 C -0.128 4.128 6 C -0.146 4.146 7 C -0.138 4.138 8 C -0.142 4.142 9 C -0.110 4.110 10 C 0.407 3.593 11 O -0.464 6.464 12 N -0.393 5.393 13 C 0.064 3.936 14 C -0.181 4.181 15 C 0.024 3.976 16 N -0.330 5.330 17 C -0.386 4.386 18 H 0.104 0.896 19 C -0.176 4.176 20 N -0.552 5.552 21 Si 0.712 3.288 22 H -0.217 1.217 23 H -0.231 1.231 24 H -0.195 1.195 25 C 0.004 3.996 26 C -0.180 4.180 27 H 0.075 0.925 28 H 0.085 0.915 29 H 0.089 0.911 30 H 0.112 0.888 31 H 0.101 0.899 32 H 0.136 0.864 33 H 0.137 0.863 34 H 0.137 0.863 35 H 0.139 0.861 36 H 0.148 0.852 37 H 0.227 0.773 38 H 0.100 0.900 39 H 0.080 0.920 40 H 0.078 0.922 41 H 0.043 0.957 42 H 0.084 0.916 43 H 0.072 0.928 44 H 0.045 0.955 45 H 0.094 0.906 46 H 0.076 0.924 47 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -1.993 26.467 6.220 27.261 hybrid contribution -0.375 -0.114 1.175 1.239 sum -2.368 26.353 7.396 27.473 Atomic orbital electron populations 1.21708 0.80042 1.02945 1.01662 1.47052 1.06125 1.04724 1.79123 1.20175 0.98392 0.84004 0.92420 1.20318 0.95082 0.98101 0.97328 1.21029 0.98636 0.98147 0.94951 1.21099 0.97690 1.00755 0.95029 1.21173 0.94549 0.98255 0.99781 1.21220 0.99577 0.98303 0.95120 1.21294 0.97191 0.97845 0.94637 1.15913 0.85430 0.80307 0.77623 1.90884 1.11457 1.86112 1.57979 1.45609 1.09642 1.04904 1.79182 1.20847 0.95130 0.80220 0.97387 1.22386 1.01057 0.98767 0.95862 1.20900 0.92312 0.87336 0.97002 1.44411 1.60277 1.14484 1.13848 1.18936 1.43040 0.83540 0.93122 0.89639 1.25284 0.99169 0.95393 0.97800 1.69837 1.41414 1.06538 1.37436 0.86974 0.79980 0.75954 0.85930 1.21654 1.23135 1.19452 1.21291 0.96034 0.94488 0.87794 1.22349 0.99624 0.96280 0.99753 0.92513 0.91479 0.91066 0.88841 0.89908 0.86373 0.86270 0.86309 0.86118 0.85168 0.77314 0.90009 0.92018 0.92228 0.95702 0.91640 0.92791 0.95493 0.90555 0.92375 0.91239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.58 10.20 59.85 0.61 1.19 16 2 N -0.63 -6.84 2.86 -188.74 -0.54 -7.38 16 3 C 0.17 1.68 5.53 -5.20 -0.03 1.65 16 4 C -0.11 -1.09 5.46 -104.63 -0.57 -1.66 16 5 C -0.11 -0.94 9.70 -39.58 -0.38 -1.32 16 6 C -0.13 -1.08 10.05 -39.58 -0.40 -1.47 16 7 C -0.12 -1.07 10.05 -39.58 -0.40 -1.47 16 8 C -0.12 -1.27 10.05 -39.58 -0.40 -1.67 16 9 C -0.09 -1.05 9.70 -39.58 -0.38 -1.44 16 10 C 0.71 10.26 8.24 -86.91 -0.72 9.54 16 11 O -0.59 -10.53 15.11 5.30 0.08 -10.45 16 12 N -0.74 -10.19 4.94 -58.63 -0.29 -10.48 16 13 C 0.17 2.80 2.42 -67.89 -0.16 2.64 16 14 C -0.14 -2.47 5.65 -26.61 -0.15 -2.62 16 15 C 0.15 3.09 6.52 -3.71 -0.02 3.06 16 16 N -0.61 -14.48 2.77 -172.32 -0.48 -14.96 16 17 C -0.26 -7.22 10.04 -15.06 -0.15 -7.37 16 18 H 0.09 2.55 8.06 -52.49 -0.42 2.12 16 19 C 0.02 0.64 5.23 -17.43 -0.09 0.55 16 20 N -0.91 -27.86 13.97 55.49 0.78 -27.08 16 21 Si 0.88 22.43 24.35 -169.99 -4.14 18.29 16 22 H -0.29 -7.03 6.62 56.52 0.37 -6.65 16 23 H -0.30 -7.86 7.11 56.52 0.40 -7.46 16 24 H -0.27 -6.80 6.64 56.52 0.38 -6.42 16 25 C 0.13 2.83 4.20 -3.71 -0.02 2.81 16 26 C -0.14 -2.42 5.55 -26.61 -0.15 -2.56 16 27 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.07 0.47 6.36 -51.93 -0.33 0.14 16 29 H 0.07 0.40 8.07 -51.93 -0.42 -0.02 16 30 H 0.09 1.04 7.36 -51.93 -0.38 0.66 16 31 H 0.08 0.57 8.01 -51.93 -0.42 0.15 16 32 H 0.12 0.75 8.06 -52.49 -0.42 0.32 16 33 H 0.12 0.74 8.06 -52.49 -0.42 0.32 16 34 H 0.12 0.82 8.06 -52.48 -0.42 0.39 16 35 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 36 H 0.13 1.68 7.58 -52.49 -0.40 1.28 16 37 H 0.39 4.42 6.33 -40.82 -0.26 4.16 16 38 H 0.08 1.52 7.58 -51.93 -0.39 1.13 16 39 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 40 H 0.06 1.03 8.14 -51.92 -0.42 0.61 16 41 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.07 1.33 7.93 -51.93 -0.41 0.92 16 43 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 44 H 0.03 0.59 7.07 -51.93 -0.37 0.22 16 45 H 0.08 1.80 4.50 -51.93 -0.23 1.57 16 46 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 47 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 LS Contribution 371.19 15.07 5.59 5.59 Total: -1.00 -33.46 371.19 -9.86 -43.31 By element: Atomic # 1 Polarization: 10.75 SS G_CDS: -7.45 Total: 3.30 kcal Atomic # 6 Polarization: 3.27 SS G_CDS: -3.41 Total: -0.14 kcal Atomic # 7 Polarization: -59.37 SS G_CDS: -0.53 Total: -59.90 kcal Atomic # 8 Polarization: -10.53 SS G_CDS: 0.08 Total: -10.45 kcal Atomic # 14 Polarization: 22.43 SS G_CDS: -4.14 Total: 18.29 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -33.46 -9.86 -43.31 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609336669.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.568 kcal (2) G-P(sol) polarization free energy of solvation -33.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.314 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds