Wall clock time and date at job start Tue Mar 31 2020 11:31:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46500 * 120.00311 * 2 1 4 4 C 1.50696 * 109.47206 * 90.00085 * 3 2 1 5 5 C 1.38241 * 119.99678 * 269.72742 * 4 3 2 6 6 C 1.38241 * 119.99671 * 179.76779 * 5 4 3 7 7 C 1.38237 * 119.99912 * 0.50220 * 6 5 4 8 8 C 1.38232 * 120.00085 * 359.75279 * 7 6 5 9 9 C 1.38229 * 120.00296 * 89.99627 * 4 3 2 10 10 C 1.34783 * 119.99800 * 179.97438 * 2 1 3 11 11 O 1.21578 * 120.00168 * 179.97438 * 10 2 1 12 12 N 1.34784 * 119.99781 * 0.02562 * 10 2 1 13 13 C 1.46496 * 119.99640 * 180.02562 * 12 10 2 14 14 C 1.53045 * 109.45995 * 275.02245 * 13 12 10 15 15 C 1.53188 * 109.31496 * 178.60034 * 14 13 12 16 16 N 1.46932 * 108.76113 * 54.65865 * 15 14 13 17 17 C 1.36939 * 120.62728 * 126.40645 * 16 15 14 18 18 H 1.07997 * 120.00228 * 332.60062 * 17 16 15 19 19 C 1.38812 * 119.99659 * 152.60870 * 17 16 15 20 20 N 1.31621 * 120.00063 * 159.34211 * 19 17 16 21 21 Si 1.86802 * 120.00351 * 339.34103 * 19 17 16 22 22 H 1.48497 * 109.47194 * 92.94314 * 21 19 17 23 23 H 1.48495 * 109.47180 * 212.94551 * 21 19 17 24 24 H 1.48506 * 109.46525 * 332.94391 * 21 19 17 25 25 C 1.46924 * 118.73877 * 306.37960 * 16 15 14 26 26 C 1.53038 * 109.45966 * 154.97362 * 13 12 10 27 27 H 1.08996 * 109.47111 * 89.99729 * 1 2 3 28 28 H 1.08997 * 109.47126 * 210.00652 * 1 2 3 29 29 H 1.09002 * 109.47055 * 330.00274 * 1 2 3 30 30 H 1.09005 * 109.46904 * 210.00172 * 3 2 1 31 31 H 1.08999 * 109.46577 * 329.99616 * 3 2 1 32 32 H 1.08001 * 120.00005 * 359.97438 * 5 4 3 33 33 H 1.07999 * 119.99393 * 180.23352 * 6 5 4 34 34 H 1.08003 * 119.99650 * 179.72260 * 7 6 5 35 35 H 1.08000 * 120.00089 * 179.97438 * 8 7 6 36 36 H 1.08001 * 120.00393 * 0.02562 * 9 4 3 37 37 H 0.96996 * 119.99936 * 359.97438 * 12 10 2 38 38 H 1.09002 * 109.46409 * 34.99585 * 13 12 10 39 39 H 1.08994 * 109.49712 * 298.57400 * 14 13 12 40 40 H 1.09008 * 109.49357 * 58.66658 * 14 13 12 41 41 H 1.08998 * 109.60269 * 294.87460 * 15 14 13 42 42 H 1.09001 * 109.70407 * 174.50320 * 15 14 13 43 43 H 0.96998 * 120.00413 * 179.97438 * 20 19 17 44 44 H 1.08991 * 109.58734 * 293.82415 * 25 16 15 45 45 H 1.09005 * 109.69972 * 173.46356 * 25 16 15 46 46 H 1.09000 * 109.49686 * 301.33053 * 26 13 12 47 47 H 1.08997 * 109.50376 * 61.43063 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4488 1.7037 1.4208 5 6 1.5299 2.5065 2.0705 6 6 1.7580 2.9017 3.3754 7 6 2.9100 2.5025 4.0271 8 6 3.8313 1.7041 3.3756 9 6 3.6006 1.3046 2.0725 10 6 2.1389 -1.1673 0.0005 11 8 3.3547 -1.1674 0.0001 12 7 1.4649 -2.3345 0.0005 13 6 2.1973 -3.6032 0.0017 14 6 2.5628 -3.9822 -1.4354 15 6 3.3587 -5.2911 -1.4274 16 7 2.5808 -6.3128 -0.7133 17 6 2.3087 -7.5195 -1.3008 18 1 2.2512 -7.5956 -2.3765 19 6 2.1067 -8.6448 -0.5135 20 7 1.4623 -9.6831 -1.0026 21 14 2.7493 -8.6857 1.2400 22 1 1.6846 -8.2273 2.1682 23 1 3.1468 -10.0731 1.5893 24 1 3.9273 -7.7890 1.3564 25 6 2.1010 -6.0154 0.6432 26 6 1.3195 -4.6982 0.6119 27 1 -0.3633 0.0000 -1.0276 28 1 -0.3633 -0.8899 0.5139 29 1 -0.3633 0.8900 0.5138 30 1 3.1500 1.1383 -0.5139 31 1 1.6085 2.0283 -0.5139 32 1 0.6322 2.8223 1.5597 33 1 1.0383 3.5257 3.8843 34 1 3.0903 2.8149 5.0451 35 1 4.7315 1.3926 3.8846 36 1 4.3208 0.6813 1.5633 37 1 0.4949 -2.3344 0.0005 38 1 3.1076 -3.4965 0.5917 39 1 1.6522 -4.1134 -2.0198 40 1 3.1685 -3.1910 -1.8774 41 1 4.3112 -5.1367 -0.9205 42 1 3.5384 -5.6182 -2.4515 43 1 1.3214 -10.4695 -0.4526 44 1 2.9509 -5.9201 1.3187 45 1 1.4493 -6.8188 0.9868 46 1 1.0401 -4.4168 1.6272 47 1 0.4206 -4.8227 0.0080 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609336669.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:31:25 Heat of formation + Delta-G solvation = 8.529869 kcal Electronic energy + Delta-G solvation = -26774.141004 eV Core-core repulsion = 23149.883918 eV Total energy + Delta-G solvation = -3624.257086 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.46900 -40.08248 -39.25174 -36.64793 -36.05332 -34.12924 -32.81151 -31.98648 -31.76764 -31.37665 -28.22620 -27.28473 -26.06663 -24.49289 -23.54494 -23.42272 -22.38636 -21.24786 -20.85562 -19.24671 -18.53860 -17.89589 -17.60431 -17.04586 -16.72811 -16.02774 -15.98528 -15.92818 -15.61897 -15.36176 -15.08803 -14.87067 -14.52924 -14.38933 -14.26099 -14.02247 -13.82145 -13.71692 -13.50065 -13.46268 -13.27735 -12.79324 -12.59642 -12.50274 -12.28465 -12.11959 -12.02431 -11.83929 -11.77733 -11.57148 -11.36745 -11.21532 -10.71663 -10.12254 -9.80826 -9.75123 -9.48655 -8.97540 -8.16497 -5.48842 0.36343 0.51345 1.29048 1.42526 1.51318 1.72624 2.17908 2.41229 2.85173 3.05208 3.09966 3.32839 3.76732 3.88745 3.92135 3.99143 4.17045 4.21923 4.26113 4.30389 4.30546 4.31586 4.47486 4.59419 4.62099 4.65031 4.67821 4.76161 4.80279 4.86086 4.90384 4.92008 5.03356 5.06459 5.11584 5.14723 5.17063 5.38152 5.51244 5.56494 5.58600 5.63482 5.71379 5.86429 5.96196 6.12689 6.13047 6.89972 6.99966 7.60227 7.60710 8.01616 9.03312 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.022512 B = 0.002853 C = 0.002723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1243.484727 B = 9810.581758 C =10278.631096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.626 5.626 3 C 0.172 3.828 4 C -0.116 4.116 5 C -0.106 4.106 6 C -0.128 4.128 7 C -0.125 4.125 8 C -0.140 4.140 9 C -0.118 4.118 10 C 0.699 3.301 11 O -0.628 6.628 12 N -0.729 5.729 13 C 0.180 3.820 14 C -0.125 4.125 15 C 0.148 3.852 16 N -0.619 5.619 17 C -0.248 4.248 18 H 0.054 0.946 19 C -0.032 4.032 20 N -0.955 5.955 21 Si 0.943 3.057 22 H -0.268 1.268 23 H -0.311 1.311 24 H -0.267 1.267 25 C 0.123 3.877 26 C -0.126 4.126 27 H 0.071 0.929 28 H 0.071 0.929 29 H 0.095 0.905 30 H 0.069 0.931 31 H 0.118 0.882 32 H 0.149 0.851 33 H 0.147 0.853 34 H 0.139 0.861 35 H 0.124 0.876 36 H 0.102 0.898 37 H 0.407 0.593 38 H 0.063 0.937 39 H 0.062 0.938 40 H 0.062 0.938 41 H 0.027 0.973 42 H 0.059 0.941 43 H 0.262 0.738 44 H 0.030 0.970 45 H 0.059 0.941 46 H 0.086 0.914 47 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.807 29.793 7.963 31.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.362 5.362 3 C 0.050 3.950 4 C -0.117 4.117 5 C -0.124 4.124 6 C -0.146 4.146 7 C -0.143 4.143 8 C -0.158 4.158 9 C -0.137 4.137 10 C 0.400 3.600 11 O -0.509 6.509 12 N -0.385 5.385 13 C 0.074 3.926 14 C -0.166 4.166 15 C 0.022 3.978 16 N -0.343 5.343 17 C -0.378 4.378 18 H 0.072 0.928 19 C -0.227 4.227 20 N -0.601 5.601 21 Si 0.772 3.228 22 H -0.195 1.195 23 H -0.240 1.240 24 H -0.191 1.191 25 C -0.003 4.003 26 C -0.166 4.166 27 H 0.090 0.910 28 H 0.089 0.911 29 H 0.114 0.886 30 H 0.087 0.913 31 H 0.136 0.864 32 H 0.167 0.833 33 H 0.165 0.835 34 H 0.157 0.843 35 H 0.142 0.858 36 H 0.120 0.880 37 H 0.245 0.755 38 H 0.082 0.918 39 H 0.081 0.919 40 H 0.081 0.919 41 H 0.045 0.955 42 H 0.077 0.923 43 H 0.071 0.929 44 H 0.048 0.952 45 H 0.077 0.923 46 H 0.104 0.896 47 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -4.005 29.653 7.949 30.960 hybrid contribution 0.248 -0.967 0.579 1.154 sum -3.756 28.687 8.527 30.162 Atomic orbital electron populations 1.21996 0.77445 1.04428 1.03117 1.47106 1.07688 1.03715 1.77695 1.20287 0.98040 0.84222 0.92480 1.20393 0.95072 0.98740 0.97521 1.21343 0.98987 0.96978 0.95098 1.21502 0.97735 1.00302 0.95079 1.21476 0.94447 0.97601 1.00762 1.21373 1.00462 0.99066 0.94898 1.21246 0.97904 0.98980 0.95549 1.16124 0.85059 0.81284 0.77524 1.90867 1.13497 1.86822 1.59700 1.45266 1.10211 1.03795 1.79224 1.20485 0.94689 0.81385 0.96043 1.22189 1.00534 0.96968 0.96881 1.21002 0.92590 0.87859 0.96328 1.44515 1.61224 1.13780 1.14818 1.18869 1.41521 0.85368 0.92033 0.92836 1.25868 0.99787 0.95164 1.01890 1.69955 1.43478 1.07443 1.39257 0.85969 0.79748 0.75349 0.81745 1.19463 1.23971 1.19148 1.21352 0.96288 0.96287 0.86351 1.22150 0.98860 0.93889 1.01666 0.91037 0.91063 0.88593 0.91267 0.86368 0.83350 0.83496 0.84283 0.85786 0.87975 0.75514 0.91849 0.91927 0.91946 0.95481 0.92265 0.92881 0.95223 0.92255 0.89552 0.90787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.76 10.20 127.77 1.30 2.07 16 2 N -0.63 -12.08 2.86 -869.31 -2.48 -14.56 16 3 C 0.17 3.04 5.53 85.63 0.47 3.51 16 4 C -0.12 -2.19 5.46 -19.87 -0.11 -2.30 16 5 C -0.11 -1.45 9.70 22.27 0.22 -1.23 16 6 C -0.13 -1.71 10.05 22.27 0.22 -1.49 16 7 C -0.12 -1.97 10.05 22.27 0.22 -1.75 16 8 C -0.14 -2.82 10.05 22.27 0.22 -2.60 16 9 C -0.12 -2.77 9.70 22.27 0.22 -2.56 16 10 C 0.70 19.44 8.24 179.05 1.48 20.91 16 11 O -0.63 -22.78 15.11 -3.96 -0.06 -22.84 16 12 N -0.73 -18.57 4.94 -457.68 -2.26 -20.83 16 13 C 0.18 5.70 2.42 45.02 0.11 5.81 16 14 C -0.13 -4.31 5.65 30.67 0.17 -4.14 16 15 C 0.15 6.05 6.52 86.36 0.56 6.61 16 16 N -0.62 -29.50 2.77 -699.10 -1.94 -31.43 16 17 C -0.25 -14.18 10.04 84.03 0.84 -13.34 16 18 H 0.05 3.33 8.06 -2.91 -0.02 3.31 16 19 C -0.03 -1.89 5.23 84.86 0.44 -1.44 16 20 N -0.96 -59.96 13.97 21.65 0.30 -59.65 16 21 Si 0.94 46.68 24.35 68.60 1.67 48.35 16 22 H -0.27 -12.28 6.62 99.48 0.66 -11.63 16 23 H -0.31 -15.67 7.11 99.48 0.71 -14.96 16 24 H -0.27 -12.92 6.64 99.48 0.66 -12.26 16 25 C 0.12 5.16 4.20 86.36 0.36 5.52 16 26 C -0.13 -4.05 5.55 30.67 0.17 -3.88 16 27 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 28 H 0.07 0.72 6.36 -2.39 -0.02 0.70 16 29 H 0.10 0.58 8.07 -2.39 -0.02 0.56 16 30 H 0.07 1.56 7.36 -2.38 -0.02 1.54 16 31 H 0.12 1.21 8.01 -2.39 -0.02 1.19 16 32 H 0.15 1.09 8.06 -2.91 -0.02 1.07 16 33 H 0.15 1.13 8.06 -2.91 -0.02 1.11 16 34 H 0.14 1.55 8.06 -2.91 -0.02 1.52 16 35 H 0.12 2.23 8.06 -2.91 -0.02 2.21 16 36 H 0.10 2.89 7.58 -2.91 -0.02 2.87 16 37 H 0.41 7.90 6.33 -92.71 -0.59 7.31 16 38 H 0.06 2.30 7.58 -2.39 -0.02 2.28 16 39 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 40 H 0.06 2.13 8.14 -2.38 -0.02 2.11 16 41 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 42 H 0.06 2.45 7.93 -2.39 -0.02 2.43 16 43 H 0.26 15.61 8.31 -92.71 -0.77 14.84 16 44 H 0.03 1.24 7.07 -2.39 -0.02 1.23 16 45 H 0.06 2.70 4.50 -2.38 -0.01 2.69 16 46 H 0.09 2.33 8.14 -2.39 -0.02 2.31 16 47 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 Total: -1.00 -75.13 371.19 2.42 -72.71 By element: Atomic # 1 Polarization: 18.28 SS G_CDS: 0.28 Total: 18.56 kcal Atomic # 6 Polarization: 2.79 SS G_CDS: 6.91 Total: 9.70 kcal Atomic # 7 Polarization: -120.10 SS G_CDS: -6.38 Total: -126.48 kcal Atomic # 8 Polarization: -22.78 SS G_CDS: -0.06 Total: -22.84 kcal Atomic # 14 Polarization: 46.68 SS G_CDS: 1.67 Total: 48.35 kcal Total: -75.13 2.42 -72.71 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609336669.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.241 kcal (2) G-P(sol) polarization free energy of solvation -75.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.711 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds