Wall clock time and date at job start Tue Mar 31 2020 11:21:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46892 * 1 3 3 C 1.46906 * 110.99933 * 2 1 4 4 C 1.53237 * 109.34057 * 187.25238 * 3 2 1 5 5 N 1.47072 * 108.52134 * 306.16951 * 4 3 2 6 6 N 1.40107 * 120.87831 * 231.18852 * 5 4 3 7 7 C 1.29734 * 120.00206 * 4.65679 * 6 5 4 8 8 C 1.47498 * 120.00030 * 174.27914 * 7 6 5 9 9 C 1.39717 * 120.12956 * 0.02562 * 8 7 6 10 10 C 1.37947 * 119.95620 * 179.97438 * 9 8 7 11 11 C 1.38305 * 120.21272 * 359.97438 * 10 9 8 12 12 C 1.38835 * 120.25990 * 359.97438 * 11 10 9 13 13 O 1.35902 * 119.97789 * 180.02562 * 12 11 10 14 14 C 1.42901 * 116.99913 * 359.97438 * 13 12 11 15 15 C 1.53008 * 109.47106 * 180.02562 * 14 13 12 16 16 C 1.50698 * 109.47197 * 179.97438 * 15 14 13 17 17 H 1.08004 * 120.00110 * 359.97438 * 16 15 14 18 18 C 1.37876 * 120.00158 * 180.02562 * 16 15 14 19 19 N 1.31512 * 119.99650 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 120.00032 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.47211 * 59.99762 * 20 18 16 22 22 H 1.48507 * 109.47041 * 179.97438 * 20 18 16 23 23 H 1.48499 * 109.47320 * 299.99596 * 20 18 16 24 24 C 1.38459 * 120.04212 * 0.29123 * 12 11 10 25 25 C 1.47075 * 118.24085 * 51.45794 * 5 4 3 26 26 C 1.46896 * 111.00119 * 124.29834 * 2 1 3 27 27 H 1.09006 * 109.47340 * 60.00618 * 1 2 3 28 28 H 1.09003 * 109.47304 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47659 * 300.00043 * 1 2 3 30 30 H 1.08999 * 109.49383 * 67.28661 * 3 2 1 31 31 H 1.09002 * 109.50829 * 307.22496 * 3 2 1 32 32 H 1.08999 * 109.62516 * 186.45618 * 4 3 2 33 33 H 1.08998 * 109.78713 * 65.97482 * 4 3 2 34 34 H 1.08001 * 120.00172 * 354.28798 * 7 6 5 35 35 H 1.08001 * 120.02278 * 359.94951 * 9 8 7 36 36 H 1.07991 * 119.89542 * 180.02562 * 10 9 8 37 37 H 1.07995 * 119.86987 * 179.97438 * 11 10 9 38 38 H 1.08997 * 109.46774 * 299.99795 * 14 13 12 39 39 H 1.08998 * 109.47596 * 60.00313 * 14 13 12 40 40 H 1.09002 * 109.46986 * 299.99981 * 15 14 13 41 41 H 1.08998 * 109.46764 * 59.99649 * 15 14 13 42 42 H 0.97008 * 119.99861 * 180.02562 * 19 18 16 43 43 H 1.08005 * 120.10719 * 179.72922 * 24 12 11 44 44 H 1.09006 * 109.63073 * 68.25084 * 25 5 4 45 45 H 1.09002 * 109.63462 * 188.83518 * 25 5 4 46 46 H 1.09003 * 109.49624 * 292.70574 * 26 2 1 47 47 H 1.08994 * 109.49695 * 52.76321 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 3.5163 1.3313 -0.1825 5 7 4.0868 0.4462 0.8442 6 7 5.1456 0.8749 1.6554 7 6 5.5761 2.0957 1.5688 8 6 6.6033 2.5839 2.5080 9 6 7.1151 1.7337 3.4916 10 6 8.0761 2.1938 4.3677 11 6 8.5359 3.4949 4.2758 12 6 8.0343 4.3470 3.3012 13 8 8.4907 5.6243 3.2158 14 6 9.4857 6.0223 4.1610 15 6 9.8722 7.4815 3.9108 16 6 10.9211 7.9014 4.9080 17 1 11.2763 7.1981 5.6467 18 6 11.4266 9.1838 4.8780 19 7 10.9938 10.0404 3.9789 20 14 12.7273 9.7041 6.1137 21 1 13.9269 8.8420 5.9623 22 1 13.1024 11.1204 5.8709 23 1 12.1872 9.5635 7.4898 24 6 7.0656 3.8980 2.4198 25 6 3.5204 -0.9030 0.9927 26 6 1.9954 -0.7728 1.1329 27 1 -0.3634 0.5138 -0.8901 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 1.7553 1.8533 0.9478 31 1 1.5455 1.9341 -0.8181 32 1 3.9253 2.3352 -0.0690 33 1 3.7590 0.9470 -1.1732 34 1 5.1821 2.7546 0.8092 35 1 6.7582 0.7171 3.5661 36 1 8.4713 1.5357 5.1273 37 1 9.2881 3.8495 4.9649 38 1 9.0889 5.9200 5.1710 39 1 10.3659 5.3890 4.0505 40 1 10.2688 7.5842 2.9007 41 1 8.9919 8.1146 4.0215 42 1 11.3497 10.9425 3.9576 43 1 6.6715 4.5613 1.6640 44 1 3.7606 -1.4999 0.1128 45 1 3.9322 -1.3770 1.8837 46 1 1.7555 -0.2612 2.0651 47 1 1.5453 -1.7655 1.1366 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000726737717.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:21:23 Heat of formation + Delta-G solvation = 43.182806 kcal Electronic energy + Delta-G solvation = -24885.431236 eV Core-core repulsion = 21262.676814 eV Total energy + Delta-G solvation = -3622.754422 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.75660 -39.37599 -37.48937 -36.25395 -33.43632 -33.15738 -31.60388 -31.02005 -30.35550 -29.08204 -27.60397 -25.28976 -24.71735 -24.12663 -22.97386 -22.26430 -21.31557 -20.35416 -19.27276 -17.73968 -17.46173 -16.27673 -15.75436 -15.61465 -15.52849 -15.39706 -15.36076 -15.29896 -14.98064 -14.73406 -14.45696 -14.05138 -13.29961 -13.10351 -13.07276 -12.83895 -12.71093 -12.33287 -12.29771 -11.99981 -11.77275 -11.73791 -11.56924 -11.45772 -11.31687 -11.23583 -10.84063 -10.77920 -10.49381 -10.06294 -9.84985 -9.65367 -9.30746 -9.12846 -8.84996 -8.44432 -7.94037 -7.54681 -6.09849 -4.14522 0.95893 1.70758 2.31457 2.57895 3.29176 3.33558 3.35257 3.40339 3.81699 4.08354 4.27405 4.41968 4.47326 4.58002 4.62263 4.80489 4.82794 4.98579 5.03481 5.06296 5.07732 5.18036 5.25500 5.26524 5.30713 5.38101 5.38385 5.43606 5.51631 5.59891 5.63279 5.64872 6.01208 6.04921 6.09226 6.16704 6.46265 6.49264 6.55472 6.58209 6.68775 6.73605 6.81331 6.98116 7.51028 7.64802 7.81696 8.06970 8.10924 8.24391 8.90846 9.49724 11.01617 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.031624 B = 0.001787 C = 0.001718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 885.181295 B =15663.363658 C =16297.735677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.543 5.543 3 C 0.044 3.956 4 C 0.101 3.899 5 N -0.546 5.546 6 N -0.217 5.217 7 C 0.059 3.941 8 C -0.005 4.005 9 C -0.139 4.139 10 C -0.084 4.084 11 C -0.203 4.203 12 C 0.143 3.857 13 O -0.316 6.316 14 C 0.065 3.935 15 C 0.025 3.975 16 C -0.528 4.528 17 H 0.058 0.942 18 C 0.061 3.939 19 N -0.889 5.889 20 Si 0.899 3.101 21 H -0.275 1.275 22 H -0.286 1.286 23 H -0.276 1.276 24 C -0.142 4.142 25 C 0.166 3.834 26 C 0.037 3.963 27 H 0.070 0.930 28 H 0.069 0.931 29 H 0.025 0.975 30 H 0.038 0.962 31 H 0.085 0.915 32 H 0.084 0.916 33 H 0.069 0.931 34 H 0.115 0.885 35 H 0.126 0.874 36 H 0.122 0.878 37 H 0.131 0.869 38 H 0.051 0.949 39 H 0.051 0.949 40 H 0.028 0.972 41 H 0.028 0.972 42 H 0.264 0.736 43 H 0.131 0.869 44 H 0.066 0.934 45 H 0.087 0.913 46 H 0.039 0.961 47 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.029 -22.269 -7.093 30.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.268 5.268 3 C -0.086 4.086 4 C -0.025 4.025 5 N -0.362 5.362 6 N -0.021 5.021 7 C -0.151 4.151 8 C -0.007 4.007 9 C -0.160 4.160 10 C -0.102 4.102 11 C -0.223 4.223 12 C 0.097 3.903 13 O -0.229 6.229 14 C -0.009 4.009 15 C -0.012 4.012 16 C -0.566 4.566 17 H 0.076 0.924 18 C -0.142 4.142 19 N -0.527 5.527 20 Si 0.726 3.274 21 H -0.201 1.201 22 H -0.211 1.211 23 H -0.201 1.201 24 C -0.163 4.163 25 C 0.043 3.957 26 C -0.092 4.092 27 H 0.088 0.912 28 H 0.088 0.912 29 H 0.044 0.956 30 H 0.057 0.943 31 H 0.104 0.896 32 H 0.102 0.898 33 H 0.088 0.912 34 H 0.132 0.868 35 H 0.144 0.856 36 H 0.140 0.860 37 H 0.149 0.851 38 H 0.069 0.931 39 H 0.069 0.931 40 H 0.046 0.954 41 H 0.046 0.954 42 H 0.073 0.927 43 H 0.149 0.851 44 H 0.084 0.916 45 H 0.106 0.894 46 H 0.057 0.943 47 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -18.934 -23.110 -7.381 30.774 hybrid contribution 0.311 1.420 0.990 1.759 sum -18.623 -21.690 -6.391 29.293 Atomic orbital electron populations 1.22372 0.86890 1.02248 1.00829 1.61940 1.07966 1.13635 1.43243 1.22484 0.95384 0.89523 1.01191 1.21857 0.92293 0.95919 0.92408 1.50400 1.33896 1.14675 1.37201 1.74312 1.00106 1.15867 1.11774 1.23932 0.99077 0.92341 0.99799 1.17968 0.95207 0.92710 0.94851 1.21085 0.98809 0.99863 0.96233 1.20851 0.96153 0.94916 0.98283 1.21493 1.04391 0.95147 1.01292 1.18971 0.92855 0.84978 0.93541 1.86171 1.56152 1.24204 1.56363 1.23333 0.87506 1.00147 0.89910 1.19123 0.97036 0.86710 0.98325 1.20940 1.22380 0.97347 1.15908 0.92401 1.24985 0.96860 0.96451 0.95865 1.69967 1.42920 1.05522 1.34331 0.86545 0.81748 0.77617 0.81444 1.20095 1.21129 1.20105 1.20366 0.99317 0.95207 1.01403 1.21388 0.90443 0.81709 1.02202 1.22706 0.95836 0.98786 0.91904 0.91156 0.91171 0.95595 0.94341 0.89650 0.89822 0.91249 0.86752 0.85628 0.85983 0.85145 0.93104 0.93078 0.95375 0.95395 0.92664 0.85118 0.91633 0.89431 0.94251 0.89496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.14 9.58 60.06 0.58 0.71 16 2 N -0.54 -3.98 4.88 -242.31 -1.18 -5.16 16 3 C 0.04 0.32 5.62 -3.70 -0.02 0.30 16 4 C 0.10 0.85 6.55 -3.61 -0.02 0.83 16 5 N -0.55 -5.55 4.01 -112.98 -0.45 -6.00 16 6 N -0.22 -2.61 10.65 32.16 0.34 -2.27 16 7 C 0.06 0.70 10.26 -14.67 -0.15 0.55 16 8 C -0.01 -0.07 5.87 -105.07 -0.62 -0.68 16 9 C -0.14 -1.84 9.57 -39.14 -0.37 -2.21 16 10 C -0.08 -1.12 10.03 -39.66 -0.40 -1.51 16 11 C -0.20 -3.16 9.03 -39.34 -0.36 -3.51 16 12 C 0.14 2.47 6.68 -39.28 -0.26 2.21 16 13 O -0.32 -6.41 10.13 -19.43 -0.20 -6.61 16 14 C 0.07 1.38 4.68 37.16 0.17 1.56 16 15 C 0.03 0.66 5.34 -27.88 -0.15 0.51 16 16 C -0.53 -14.66 9.11 -34.44 -0.31 -14.97 16 17 H 0.06 1.53 7.74 -52.48 -0.41 1.12 16 18 C 0.06 1.71 5.46 -17.82 -0.10 1.62 16 19 N -0.89 -26.37 13.29 55.43 0.74 -25.63 16 20 Si 0.90 21.21 29.54 -169.99 -5.02 16.19 16 21 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 22 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 23 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 24 C -0.14 -2.11 9.73 -39.00 -0.38 -2.49 16 25 C 0.17 1.34 6.99 -3.36 -0.02 1.31 16 26 C 0.04 0.26 5.64 -3.46 -0.02 0.24 16 27 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.07 0.32 8.08 -51.93 -0.42 -0.10 16 29 H 0.03 0.15 8.14 -51.93 -0.42 -0.27 16 30 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.09 0.52 8.11 -51.93 -0.42 0.09 16 32 H 0.08 0.66 5.49 -51.93 -0.29 0.38 16 33 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 34 H 0.12 1.16 5.64 -52.49 -0.30 0.86 16 35 H 0.13 1.52 7.55 -52.49 -0.40 1.12 16 36 H 0.12 1.31 8.06 -52.49 -0.42 0.89 16 37 H 0.13 1.97 6.28 -52.49 -0.33 1.65 16 38 H 0.05 1.03 7.66 -51.93 -0.40 0.63 16 39 H 0.05 1.03 7.66 -51.93 -0.40 0.64 16 40 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 41 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 43 H 0.13 1.76 8.06 -52.48 -0.42 1.34 16 44 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 45 H 0.09 0.67 8.13 -51.93 -0.42 0.25 16 46 H 0.04 0.32 8.14 -51.93 -0.42 -0.11 16 47 H 0.09 0.45 8.06 -51.93 -0.42 0.03 16 LS Contribution 383.90 15.07 5.79 5.79 Total: -1.00 -31.17 383.90 -9.98 -41.15 By element: Atomic # 1 Polarization: 5.66 SS G_CDS: -7.55 Total: -1.90 kcal Atomic # 6 Polarization: -13.12 SS G_CDS: -2.43 Total: -15.55 kcal Atomic # 7 Polarization: -38.51 SS G_CDS: -0.56 Total: -39.06 kcal Atomic # 8 Polarization: -6.41 SS G_CDS: -0.20 Total: -6.61 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -31.17 -9.98 -41.15 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000726737717.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.334 kcal (2) G-P(sol) polarization free energy of solvation -31.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.151 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds