Wall clock time and date at job start Tue Mar 31 2020 11:21:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46892 * 1 3 3 C 1.46906 * 110.99933 * 2 1 4 4 C 1.53237 * 109.34057 * 187.25238 * 3 2 1 5 5 N 1.47072 * 108.52134 * 306.16951 * 4 3 2 6 6 N 1.40107 * 120.87831 * 231.18852 * 5 4 3 7 7 C 1.29734 * 120.00206 * 4.65679 * 6 5 4 8 8 C 1.47498 * 120.00030 * 174.27914 * 7 6 5 9 9 C 1.39717 * 120.12956 * 0.02562 * 8 7 6 10 10 C 1.37947 * 119.95620 * 179.97438 * 9 8 7 11 11 C 1.38305 * 120.21272 * 359.97438 * 10 9 8 12 12 C 1.38835 * 120.25990 * 359.97438 * 11 10 9 13 13 O 1.35902 * 119.97789 * 180.02562 * 12 11 10 14 14 C 1.42901 * 116.99913 * 359.97438 * 13 12 11 15 15 C 1.53008 * 109.47106 * 180.02562 * 14 13 12 16 16 C 1.50698 * 109.47197 * 179.97438 * 15 14 13 17 17 H 1.08004 * 120.00110 * 359.97438 * 16 15 14 18 18 C 1.37876 * 120.00158 * 180.02562 * 16 15 14 19 19 N 1.31512 * 119.99650 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 120.00032 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.47211 * 59.99762 * 20 18 16 22 22 H 1.48507 * 109.47041 * 179.97438 * 20 18 16 23 23 H 1.48499 * 109.47320 * 299.99596 * 20 18 16 24 24 C 1.38459 * 120.04212 * 0.29123 * 12 11 10 25 25 C 1.47075 * 118.24085 * 51.45794 * 5 4 3 26 26 C 1.46896 * 111.00119 * 124.29834 * 2 1 3 27 27 H 1.09006 * 109.47340 * 60.00618 * 1 2 3 28 28 H 1.09003 * 109.47304 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47659 * 300.00043 * 1 2 3 30 30 H 1.08999 * 109.49383 * 67.28661 * 3 2 1 31 31 H 1.09002 * 109.50829 * 307.22496 * 3 2 1 32 32 H 1.08999 * 109.62516 * 186.45618 * 4 3 2 33 33 H 1.08998 * 109.78713 * 65.97482 * 4 3 2 34 34 H 1.08001 * 120.00172 * 354.28798 * 7 6 5 35 35 H 1.08001 * 120.02278 * 359.94951 * 9 8 7 36 36 H 1.07991 * 119.89542 * 180.02562 * 10 9 8 37 37 H 1.07995 * 119.86987 * 179.97438 * 11 10 9 38 38 H 1.08997 * 109.46774 * 299.99795 * 14 13 12 39 39 H 1.08998 * 109.47596 * 60.00313 * 14 13 12 40 40 H 1.09002 * 109.46986 * 299.99981 * 15 14 13 41 41 H 1.08998 * 109.46764 * 59.99649 * 15 14 13 42 42 H 0.97008 * 119.99861 * 180.02562 * 19 18 16 43 43 H 1.08005 * 120.10719 * 179.72922 * 24 12 11 44 44 H 1.09006 * 109.63073 * 68.25084 * 25 5 4 45 45 H 1.09002 * 109.63462 * 188.83518 * 25 5 4 46 46 H 1.09003 * 109.49624 * 292.70574 * 26 2 1 47 47 H 1.08994 * 109.49695 * 52.76321 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 3.5163 1.3313 -0.1825 5 7 4.0868 0.4462 0.8442 6 7 5.1456 0.8749 1.6554 7 6 5.5761 2.0957 1.5688 8 6 6.6033 2.5839 2.5080 9 6 7.1151 1.7337 3.4916 10 6 8.0761 2.1938 4.3677 11 6 8.5359 3.4949 4.2758 12 6 8.0343 4.3470 3.3012 13 8 8.4907 5.6243 3.2158 14 6 9.4857 6.0223 4.1610 15 6 9.8722 7.4815 3.9108 16 6 10.9211 7.9014 4.9080 17 1 11.2763 7.1981 5.6467 18 6 11.4266 9.1838 4.8780 19 7 10.9938 10.0404 3.9789 20 14 12.7273 9.7041 6.1137 21 1 13.9269 8.8420 5.9623 22 1 13.1024 11.1204 5.8709 23 1 12.1872 9.5635 7.4898 24 6 7.0656 3.8980 2.4198 25 6 3.5204 -0.9030 0.9927 26 6 1.9954 -0.7728 1.1329 27 1 -0.3634 0.5138 -0.8901 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 1.7553 1.8533 0.9478 31 1 1.5455 1.9341 -0.8181 32 1 3.9253 2.3352 -0.0690 33 1 3.7590 0.9470 -1.1732 34 1 5.1821 2.7546 0.8092 35 1 6.7582 0.7171 3.5661 36 1 8.4713 1.5357 5.1273 37 1 9.2881 3.8495 4.9649 38 1 9.0889 5.9200 5.1710 39 1 10.3659 5.3890 4.0505 40 1 10.2688 7.5842 2.9007 41 1 8.9919 8.1146 4.0215 42 1 11.3497 10.9425 3.9576 43 1 6.6715 4.5613 1.6640 44 1 3.7606 -1.4999 0.1128 45 1 3.9322 -1.3770 1.8837 46 1 1.7555 -0.2612 2.0651 47 1 1.5453 -1.7655 1.1366 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000726737717.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:21:22 Heat of formation + Delta-G solvation = 24.376363 kcal Electronic energy + Delta-G solvation = -24886.246745 eV Core-core repulsion = 21262.676814 eV Total energy + Delta-G solvation = -3623.569931 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -41.00292 -40.08097 -38.69514 -37.13899 -35.44877 -34.03192 -32.58536 -32.23371 -31.61236 -30.41386 -28.31466 -27.03287 -25.61053 -24.80863 -24.05731 -23.40631 -22.77194 -21.45865 -20.23839 -18.92203 -18.49604 -18.09298 -16.90483 -16.89899 -16.66605 -16.49531 -16.25953 -16.13557 -15.97664 -15.71709 -15.43569 -15.05532 -14.38784 -14.33608 -14.31434 -14.22937 -13.65842 -13.59568 -13.15871 -13.14979 -12.85056 -12.73493 -12.58533 -12.51203 -12.37099 -12.34321 -12.26244 -12.14000 -11.96364 -11.56273 -11.54796 -11.37744 -10.93283 -10.59450 -10.10132 -9.46500 -9.16072 -8.44450 -8.24727 -6.38243 -0.10179 0.55218 1.42300 1.46176 1.47269 1.54071 1.64205 2.29591 2.53610 2.87553 2.96573 3.09691 3.51817 3.79693 3.92921 3.95399 4.02810 4.12714 4.20247 4.21940 4.28246 4.31264 4.32658 4.39102 4.47752 4.57639 4.58665 4.59640 4.62544 4.70347 4.75272 4.77347 4.81137 4.98928 5.01493 5.07790 5.09120 5.34033 5.44585 5.50144 5.54461 5.60758 5.70146 5.88425 5.92559 5.96860 6.08390 6.09699 6.58831 6.76439 7.24810 7.31727 8.88020 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.031624 B = 0.001787 C = 0.001718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 885.181295 B =15663.363658 C =16297.735677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.552 5.552 3 C 0.048 3.952 4 C 0.098 3.902 5 N -0.548 5.548 6 N -0.224 5.224 7 C 0.046 3.954 8 C -0.001 4.001 9 C -0.136 4.136 10 C -0.078 4.078 11 C -0.213 4.213 12 C 0.110 3.890 13 O -0.339 6.339 14 C 0.084 3.916 15 C 0.027 3.973 16 C -0.547 4.547 17 H 0.071 0.929 18 C 0.002 3.998 19 N -0.930 5.930 20 Si 0.975 3.025 21 H -0.264 1.264 22 H -0.283 1.283 23 H -0.264 1.264 24 C -0.147 4.147 25 C 0.161 3.839 26 C 0.043 3.957 27 H 0.077 0.923 28 H 0.081 0.919 29 H 0.022 0.978 30 H 0.025 0.975 31 H 0.100 0.900 32 H 0.086 0.914 33 H 0.073 0.927 34 H 0.129 0.871 35 H 0.141 0.859 36 H 0.153 0.847 37 H 0.131 0.869 38 H 0.061 0.939 39 H 0.061 0.939 40 H -0.001 1.001 41 H -0.001 1.001 42 H 0.266 0.734 43 H 0.137 0.863 44 H 0.072 0.928 45 H 0.090 0.910 46 H 0.026 0.974 47 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.512 -24.473 -6.469 31.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.276 5.276 3 C -0.082 4.082 4 C -0.028 4.028 5 N -0.364 5.364 6 N -0.029 5.029 7 C -0.163 4.163 8 C -0.003 4.003 9 C -0.157 4.157 10 C -0.095 4.095 11 C -0.233 4.233 12 C 0.065 3.935 13 O -0.253 6.253 14 C 0.010 3.990 15 C -0.010 4.010 16 C -0.585 4.585 17 H 0.089 0.911 18 C -0.197 4.197 19 N -0.569 5.569 20 Si 0.799 3.201 21 H -0.189 1.189 22 H -0.208 1.208 23 H -0.189 1.189 24 C -0.169 4.169 25 C 0.038 3.962 26 C -0.087 4.087 27 H 0.096 0.904 28 H 0.100 0.900 29 H 0.040 0.960 30 H 0.043 0.957 31 H 0.118 0.882 32 H 0.104 0.896 33 H 0.091 0.909 34 H 0.146 0.854 35 H 0.158 0.842 36 H 0.170 0.830 37 H 0.149 0.851 38 H 0.079 0.921 39 H 0.079 0.921 40 H 0.017 0.983 41 H 0.017 0.983 42 H 0.075 0.925 43 H 0.155 0.845 44 H 0.090 0.910 45 H 0.108 0.892 46 H 0.045 0.955 47 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -19.440 -25.347 -6.763 32.652 hybrid contribution 0.292 1.926 0.684 2.064 sum -19.148 -23.421 -6.080 30.857 Atomic orbital electron populations 1.22416 0.85750 1.03088 1.01001 1.61983 1.09046 1.13363 1.43240 1.22444 0.94704 0.89918 1.01085 1.21975 0.92961 0.95803 0.92028 1.50673 1.33171 1.15586 1.37020 1.74193 1.00507 1.15914 1.12282 1.23837 0.99350 0.92817 1.00339 1.18112 0.95085 0.92045 0.95049 1.21350 0.98260 1.00394 0.95653 1.21153 0.95520 0.94251 0.98617 1.21598 1.04720 0.95961 1.01039 1.19261 0.94578 0.84075 0.95581 1.86083 1.56345 1.26494 1.56419 1.22871 0.88500 0.97087 0.90578 1.18970 0.95641 0.89753 0.96622 1.21387 1.22719 0.98022 1.16379 0.91075 1.26029 0.99260 0.96462 0.97918 1.70116 1.44504 1.05995 1.36323 0.85348 0.78729 0.77207 0.78841 1.18872 1.20839 1.18871 1.20491 0.99011 0.96067 1.01297 1.21570 0.91140 0.80868 1.02629 1.22679 0.95085 0.99686 0.91233 0.90433 0.90037 0.95962 0.95660 0.88161 0.89574 0.90898 0.85380 0.84162 0.82970 0.85083 0.92103 0.92079 0.98259 0.98275 0.92490 0.84485 0.91033 0.89154 0.95533 0.87453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 9.58 127.69 1.22 1.45 16 2 N -0.55 -7.03 4.88 -920.53 -4.49 -11.52 16 3 C 0.05 0.65 5.62 86.38 0.49 1.13 16 4 C 0.10 1.51 6.55 86.35 0.57 2.07 16 5 N -0.55 -10.33 4.01 -511.35 -2.05 -12.38 16 6 N -0.22 -5.07 10.65 -52.16 -0.56 -5.63 16 7 C 0.05 1.05 10.26 87.45 0.90 1.95 16 8 C 0.00 -0.02 5.87 -20.15 -0.12 -0.13 16 9 C -0.14 -3.35 9.57 22.56 0.22 -3.13 16 10 C -0.08 -1.91 10.03 22.22 0.22 -1.69 16 11 C -0.21 -6.49 9.03 22.43 0.20 -6.28 16 12 C 0.11 3.85 6.68 22.47 0.15 4.00 16 13 O -0.34 -14.28 10.13 -92.44 -0.94 -15.22 16 14 C 0.08 3.66 4.68 71.98 0.34 4.00 16 15 C 0.03 1.49 5.34 29.85 0.16 1.65 16 16 C -0.55 -30.86 9.11 25.60 0.23 -30.62 16 17 H 0.07 3.72 7.74 -2.91 -0.02 3.70 16 18 C 0.00 0.11 5.46 84.65 0.46 0.57 16 19 N -0.93 -56.57 13.29 21.45 0.28 -56.28 16 20 Si 0.98 43.42 29.54 68.60 2.03 45.45 16 21 H -0.26 -11.20 7.11 99.48 0.71 -10.50 16 22 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 23 H -0.26 -11.20 7.11 99.48 0.71 -10.49 16 24 C -0.15 -4.42 9.73 22.65 0.22 -4.20 16 25 C 0.16 2.31 6.99 86.51 0.60 2.91 16 26 C 0.04 0.51 5.64 86.54 0.49 1.00 16 27 H 0.08 0.60 8.14 -2.38 -0.02 0.58 16 28 H 0.08 0.56 8.08 -2.39 -0.02 0.54 16 29 H 0.02 0.22 8.14 -2.39 -0.02 0.20 16 30 H 0.03 0.41 8.14 -2.39 -0.02 0.39 16 31 H 0.10 1.03 8.11 -2.39 -0.02 1.01 16 32 H 0.09 1.27 5.49 -2.39 -0.01 1.26 16 33 H 0.07 1.09 8.14 -2.39 -0.02 1.08 16 34 H 0.13 2.48 5.64 -2.91 -0.02 2.46 16 35 H 0.14 3.05 7.55 -2.91 -0.02 3.03 16 36 H 0.15 2.79 8.06 -2.92 -0.02 2.77 16 37 H 0.13 3.89 6.28 -2.91 -0.02 3.87 16 38 H 0.06 2.49 7.66 -2.39 -0.02 2.47 16 39 H 0.06 2.50 7.66 -2.39 -0.02 2.48 16 40 H 0.00 -0.06 8.14 -2.39 -0.02 -0.08 16 41 H 0.00 -0.07 8.14 -2.39 -0.02 -0.09 16 42 H 0.27 15.16 8.31 -92.70 -0.77 14.39 16 43 H 0.14 3.78 8.06 -2.91 -0.02 3.76 16 44 H 0.07 0.96 8.14 -2.38 -0.02 0.94 16 45 H 0.09 1.23 8.13 -2.39 -0.02 1.21 16 46 H 0.03 0.39 8.14 -2.39 -0.02 0.37 16 47 H 0.11 0.85 8.06 -2.39 -0.02 0.83 16 Total: -1.00 -67.95 383.90 1.57 -66.39 By element: Atomic # 1 Polarization: 13.59 SS G_CDS: 0.94 Total: 14.53 kcal Atomic # 6 Polarization: -31.67 SS G_CDS: 6.35 Total: -25.32 kcal Atomic # 7 Polarization: -79.00 SS G_CDS: -6.82 Total: -85.82 kcal Atomic # 8 Polarization: -14.28 SS G_CDS: -0.94 Total: -15.22 kcal Atomic # 14 Polarization: 43.42 SS G_CDS: 2.03 Total: 45.45 kcal Total: -67.95 1.57 -66.39 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000726737717.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.763 kcal (2) G-P(sol) polarization free energy of solvation -67.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.387 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds