Wall clock time and date at job start Tue Mar 31 2020 11:28:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46501 * 120.00102 * 2 1 4 4 C 1.39679 * 120.00119 * 179.97438 * 2 1 3 5 5 C 1.38914 * 120.07079 * 359.97438 * 4 2 1 6 6 C 1.38107 * 119.92171 * 180.02562 * 5 4 2 7 7 C 1.38281 * 120.07465 * 0.02562 * 6 5 4 8 8 C 1.50703 * 119.92365 * 180.02562 * 7 6 5 9 9 N 1.46894 * 109.47483 * 89.99853 * 8 7 6 10 10 C 1.46897 * 111.00198 * 169.99908 * 9 8 7 11 11 C 1.50699 * 109.46999 * 283.99131 * 10 9 8 12 12 O 1.21292 * 120.00280 * 4.49583 * 11 10 9 13 13 N 1.34776 * 119.99817 * 184.49908 * 11 10 9 14 14 C 1.37099 * 120.00256 * 180.02562 * 13 11 10 15 15 H 1.08005 * 119.99839 * 359.97438 * 14 13 11 16 16 C 1.38943 * 120.00312 * 179.97438 * 14 13 11 17 17 N 1.31415 * 120.00220 * 359.97438 * 16 14 13 18 18 Si 1.86810 * 120.00034 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.47159 * 59.99993 * 18 16 14 20 20 H 1.48500 * 109.46920 * 180.02562 * 18 16 14 21 21 H 1.48497 * 109.47056 * 299.99704 * 18 16 14 22 22 C 1.46897 * 110.99893 * 293.95821 * 9 8 7 23 23 C 1.53007 * 117.49410 * 248.14992 * 22 9 8 24 24 C 1.53008 * 117.49781 * 179.49556 * 22 9 8 25 25 C 1.38284 * 120.15042 * 0.27507 * 7 6 5 26 26 C 1.38108 * 120.07562 * 359.44437 * 25 7 6 27 27 H 1.09006 * 109.47451 * 270.00187 * 1 2 3 28 28 H 1.08998 * 109.46940 * 29.99919 * 1 2 3 29 29 H 1.09001 * 109.47433 * 150.00334 * 1 2 3 30 30 H 1.08993 * 109.47203 * 269.99855 * 3 2 1 31 31 H 1.09005 * 109.47307 * 30.00067 * 3 2 1 32 32 H 1.08998 * 109.47320 * 149.99814 * 3 2 1 33 33 H 1.07997 * 120.04013 * 0.02562 * 5 4 2 34 34 H 1.07997 * 119.96310 * 179.97438 * 6 5 4 35 35 H 1.09005 * 109.46592 * 209.99888 * 8 7 6 36 36 H 1.09001 * 109.47214 * 329.99467 * 8 7 6 37 37 H 1.09000 * 109.47226 * 43.99013 * 10 9 8 38 38 H 1.09002 * 109.47182 * 163.99129 * 10 9 8 39 39 H 0.96998 * 120.00437 * 359.97438 * 13 11 10 40 40 H 0.96996 * 120.00050 * 180.02562 * 17 16 14 41 41 H 1.08999 * 115.55496 * 33.81525 * 22 9 8 42 42 H 1.08996 * 117.49850 * 0.02562 * 23 22 9 43 43 H 1.09000 * 117.49734 * 145.02245 * 23 22 9 44 44 H 1.08999 * 117.49231 * 214.97568 * 24 22 9 45 45 H 1.08999 * 117.49891 * 359.96430 * 24 22 9 46 46 H 1.08003 * 119.96460 * 179.70290 * 25 7 6 47 47 H 1.07996 * 120.04024 * 180.27671 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1634 -1.2096 0.0005 5 6 1.4703 -2.4135 0.0016 6 6 2.1640 -3.6078 0.0027 7 6 3.5468 -3.6059 0.0032 8 6 4.3003 -4.9111 0.0038 9 7 4.5457 -5.3355 -1.3809 10 6 5.4763 -6.4712 -1.4264 11 6 6.8796 -5.9808 -1.1788 12 8 7.0753 -4.8160 -0.9031 13 7 7.9173 -6.8366 -1.2638 14 6 9.1940 -6.3907 -1.0381 15 1 9.3682 -5.3535 -0.7925 16 6 10.2637 -7.2731 -1.1252 17 7 10.0518 -8.5353 -1.4236 18 14 12.0033 -6.6653 -0.8183 19 1 12.1008 -6.1182 0.5588 20 1 12.9562 -7.7939 -0.9718 21 1 12.3358 -5.6006 -1.7987 22 6 3.2858 -5.6596 -2.0632 23 6 3.0362 -7.1246 -2.4272 24 6 3.3686 -6.1092 -3.5234 25 6 4.2398 -2.4093 0.0084 26 6 3.5524 -1.2114 0.0015 27 1 -0.3634 0.0000 1.0277 28 1 -0.3633 0.8900 -0.5138 29 1 -0.3634 -0.8900 -0.5138 30 1 2.3792 1.5834 -1.0276 31 1 1.6084 2.0284 0.5139 32 1 3.1499 1.1384 0.5138 33 1 0.3903 -2.4156 0.0016 34 1 1.6259 -4.5441 0.0039 35 1 5.2525 -4.7805 0.5180 36 1 3.7111 -5.6706 0.5177 37 1 5.2037 -7.1953 -0.6587 38 1 5.4245 -6.9444 -2.4070 39 1 7.7609 -7.7683 -1.4840 40 1 10.7985 -9.1514 -1.4840 41 1 2.4242 -5.0602 -1.7692 42 1 3.8065 -7.8479 -2.1600 43 1 2.0103 -7.4889 -2.3731 44 1 2.5612 -5.8058 -4.1899 45 1 4.3578 -6.1640 -3.9779 46 1 5.3198 -2.4114 0.0137 47 1 4.0942 -0.2772 0.0011 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000731279942.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:28:05 Heat of formation + Delta-G solvation = 45.823301 kcal Electronic energy + Delta-G solvation = -26339.113876 eV Core-core repulsion = 22716.473955 eV Total energy + Delta-G solvation = -3622.639922 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.82324 -38.90649 -37.40900 -36.31715 -34.02321 -33.27731 -31.21165 -31.04502 -30.42381 -28.28686 -27.43666 -25.58003 -24.23322 -23.35828 -22.29972 -22.10925 -20.50623 -20.05021 -18.78643 -17.75555 -17.33987 -16.75780 -15.87405 -15.47194 -15.32965 -15.16013 -14.71372 -14.49673 -14.09667 -13.99083 -13.76712 -13.54217 -13.43319 -13.29411 -12.83863 -12.65803 -12.36327 -12.21914 -12.17986 -12.01391 -11.84549 -11.47430 -11.33864 -11.23353 -10.92952 -10.77626 -10.67873 -10.47160 -10.40677 -10.16235 -10.09021 -9.66516 -9.42013 -8.69008 -8.32664 -7.90147 -7.64822 -7.18591 -6.36089 -3.76579 1.63931 1.75463 3.04764 3.23634 3.28805 3.33219 3.78694 3.98763 4.09709 4.18862 4.40105 4.80666 4.83300 4.97987 5.02906 5.09303 5.10492 5.14314 5.18164 5.22016 5.29564 5.37795 5.41136 5.45157 5.51670 5.58151 5.66551 5.73806 5.78401 5.79984 5.89280 5.95078 6.08491 6.14191 6.21528 6.29234 6.31235 6.36564 6.43317 6.60692 7.02337 7.04530 7.21341 7.36626 7.49840 7.53625 7.60217 8.12236 8.68502 9.24178 9.61263 10.13651 10.81818 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.015979 B = 0.002962 C = 0.002583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1751.909987 B = 9450.092161 C =10838.839308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.097 3.903 2 N -0.643 5.643 3 C 0.095 3.905 4 C 0.206 3.794 5 C -0.202 4.202 6 C -0.073 4.073 7 C -0.119 4.119 8 C 0.104 3.896 9 N -0.475 5.475 10 C 0.040 3.960 11 C 0.446 3.554 12 O -0.575 6.575 13 N -0.567 5.567 14 C -0.296 4.296 15 H 0.102 0.898 16 C 0.021 3.979 17 N -0.904 5.904 18 Si 0.929 3.071 19 H -0.274 1.274 20 H -0.285 1.285 21 H -0.274 1.274 22 C 0.025 3.975 23 C -0.228 4.228 24 C -0.175 4.175 25 C -0.040 4.040 26 C -0.197 4.197 27 H 0.044 0.956 28 H 0.062 0.938 29 H 0.067 0.933 30 H 0.045 0.955 31 H 0.062 0.938 32 H 0.069 0.931 33 H 0.116 0.884 34 H 0.115 0.885 35 H 0.097 0.903 36 H 0.033 0.967 37 H 0.052 0.948 38 H 0.090 0.910 39 H 0.391 0.609 40 H 0.271 0.729 41 H 0.122 0.878 42 H 0.099 0.901 43 H 0.089 0.911 44 H 0.093 0.907 45 H 0.097 0.903 46 H 0.131 0.869 47 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.888 10.213 1.637 22.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.357 5.357 3 C -0.048 4.048 4 C 0.106 3.894 5 C -0.224 4.224 6 C -0.092 4.092 7 C -0.122 4.122 8 C -0.022 4.022 9 N -0.196 5.196 10 C -0.091 4.091 11 C 0.231 3.769 12 O -0.458 6.458 13 N -0.204 5.204 14 C -0.426 4.426 15 H 0.120 0.880 16 C -0.180 4.180 17 N -0.545 5.545 18 Si 0.757 3.243 19 H -0.200 1.200 20 H -0.211 1.211 21 H -0.199 1.199 22 C -0.085 4.085 23 C -0.267 4.267 24 C -0.213 4.213 25 C -0.059 4.059 26 C -0.220 4.220 27 H 0.062 0.938 28 H 0.081 0.919 29 H 0.086 0.914 30 H 0.064 0.936 31 H 0.080 0.920 32 H 0.088 0.912 33 H 0.134 0.866 34 H 0.133 0.867 35 H 0.115 0.885 36 H 0.051 0.949 37 H 0.070 0.930 38 H 0.108 0.892 39 H 0.224 0.776 40 H 0.081 0.919 41 H 0.140 0.860 42 H 0.117 0.883 43 H 0.108 0.892 44 H 0.111 0.889 45 H 0.116 0.884 46 H 0.148 0.852 47 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -19.458 11.417 1.577 22.615 hybrid contribution 0.380 -1.057 0.228 1.146 sum -19.078 10.360 1.805 21.784 Atomic orbital electron populations 1.21558 0.79985 1.02345 1.00776 1.46236 1.04673 1.03229 1.81538 1.21584 0.97299 0.84924 1.00998 1.17801 0.91254 0.85393 0.94987 1.20514 0.99002 0.91117 1.11769 1.20772 0.93658 0.96873 0.97915 1.19515 0.92825 0.94957 1.04873 1.21006 1.00242 0.92383 0.88612 1.61408 1.08497 1.34026 1.15720 1.22001 0.92970 0.92183 1.01992 1.19764 0.85563 0.87045 0.84487 1.90496 1.85067 1.17465 1.52772 1.41854 1.05756 1.10952 1.61871 1.19632 0.81767 0.96897 1.44291 0.88015 1.25238 1.00192 0.95079 0.97496 1.69605 1.32871 1.03124 1.48946 0.85941 0.81389 0.77945 0.79071 1.19963 1.21052 1.19950 1.22822 0.93938 0.94844 0.96871 1.23628 1.02522 0.94535 1.06058 1.23055 1.03033 1.03230 0.91952 1.20971 1.00400 0.90863 0.93660 1.20689 0.91844 0.98667 1.10753 0.93776 0.91944 0.91428 0.93614 0.91958 0.91221 0.86588 0.86678 0.88478 0.94928 0.92988 0.89220 0.77594 0.91919 0.86027 0.88281 0.89247 0.88870 0.88442 0.85158 0.86339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.73 10.19 59.84 0.61 1.34 16 2 N -0.64 -6.63 3.41 -187.55 -0.64 -7.27 16 3 C 0.10 0.78 10.19 59.85 0.61 1.39 16 4 C 0.21 2.62 6.55 -83.79 -0.55 2.07 16 5 C -0.20 -2.46 9.21 -39.38 -0.36 -2.82 16 6 C -0.07 -0.95 7.96 -39.61 -0.32 -1.26 16 7 C -0.12 -1.82 5.02 -104.59 -0.52 -2.35 16 8 C 0.10 1.73 4.72 -4.98 -0.02 1.70 16 9 N -0.48 -8.24 4.31 -229.52 -0.99 -9.23 16 10 C 0.04 0.73 4.12 -4.98 -0.02 0.71 16 11 C 0.45 10.61 7.52 -10.99 -0.08 10.53 16 12 O -0.57 -15.40 14.62 5.55 0.08 -15.32 16 13 N -0.57 -14.49 5.29 -10.96 -0.06 -14.55 16 14 C -0.30 -8.30 9.68 -14.94 -0.14 -8.45 16 15 H 0.10 2.98 7.16 -52.48 -0.38 2.60 16 16 C 0.02 0.57 5.50 -17.47 -0.10 0.48 16 17 N -0.90 -24.83 13.05 55.50 0.72 -24.10 16 18 Si 0.93 21.28 29.55 -169.99 -5.02 16.26 16 19 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 20 H -0.29 -6.38 7.11 56.52 0.40 -5.98 16 21 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 22 C 0.02 0.36 5.82 -67.71 -0.39 -0.04 16 23 C -0.23 -2.84 9.57 -26.69 -0.26 -3.10 16 24 C -0.17 -2.32 9.90 -26.69 -0.26 -2.59 16 25 C -0.04 -0.63 9.69 -39.61 -0.38 -1.01 16 26 C -0.20 -2.72 9.21 -39.38 -0.36 -3.09 16 27 H 0.04 0.31 8.14 -51.93 -0.42 -0.12 16 28 H 0.06 0.37 8.07 -51.93 -0.42 -0.05 16 29 H 0.07 0.49 6.20 -51.93 -0.32 0.17 16 30 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.06 0.39 8.07 -51.93 -0.42 -0.03 16 32 H 0.07 0.58 6.20 -51.93 -0.32 0.26 16 33 H 0.12 1.16 6.14 -52.49 -0.32 0.84 16 34 H 0.12 1.29 7.47 -52.49 -0.39 0.90 16 35 H 0.10 1.88 6.53 -51.93 -0.34 1.54 16 36 H 0.03 0.49 8.06 -51.93 -0.42 0.07 16 37 H 0.05 0.88 7.81 -51.93 -0.41 0.47 16 38 H 0.09 1.54 5.52 -51.93 -0.29 1.25 16 39 H 0.39 9.60 7.90 -40.82 -0.32 9.28 16 40 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 41 H 0.12 1.62 5.28 -51.93 -0.27 1.34 16 42 H 0.10 1.29 6.07 -51.93 -0.32 0.97 16 43 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 44 H 0.09 1.07 8.14 -51.93 -0.42 0.64 16 45 H 0.10 1.43 7.39 -51.93 -0.38 1.05 16 46 H 0.13 2.25 8.06 -52.48 -0.42 1.83 16 47 H 0.12 1.45 6.14 -52.49 -0.32 1.13 16 LS Contribution 375.34 15.07 5.66 5.66 Total: -1.00 -31.65 375.34 -9.70 -41.34 By element: Atomic # 1 Polarization: 20.59 SS G_CDS: -6.89 Total: 13.70 kcal Atomic # 6 Polarization: -3.93 SS G_CDS: -2.56 Total: -6.49 kcal Atomic # 7 Polarization: -54.19 SS G_CDS: -0.96 Total: -55.15 kcal Atomic # 8 Polarization: -15.40 SS G_CDS: 0.08 Total: -15.32 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -31.65 -9.70 -41.34 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731279942.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.168 kcal (2) G-P(sol) polarization free energy of solvation -31.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.344 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds