Wall clock time and date at job start Tue Mar 31 2020 11:28:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46501 * 120.00102 * 2 1 4 4 C 1.39679 * 120.00119 * 179.97438 * 2 1 3 5 5 C 1.38914 * 120.07079 * 359.97438 * 4 2 1 6 6 C 1.38107 * 119.92171 * 180.02562 * 5 4 2 7 7 C 1.38281 * 120.07465 * 0.02562 * 6 5 4 8 8 C 1.50703 * 119.92365 * 180.02562 * 7 6 5 9 9 N 1.46894 * 109.47483 * 89.99853 * 8 7 6 10 10 C 1.46897 * 111.00198 * 169.99908 * 9 8 7 11 11 C 1.50699 * 109.46999 * 283.99131 * 10 9 8 12 12 O 1.21292 * 120.00280 * 4.49583 * 11 10 9 13 13 N 1.34776 * 119.99817 * 184.49908 * 11 10 9 14 14 C 1.37099 * 120.00256 * 180.02562 * 13 11 10 15 15 H 1.08005 * 119.99839 * 359.97438 * 14 13 11 16 16 C 1.38943 * 120.00312 * 179.97438 * 14 13 11 17 17 N 1.31415 * 120.00220 * 359.97438 * 16 14 13 18 18 Si 1.86810 * 120.00034 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.47159 * 59.99993 * 18 16 14 20 20 H 1.48500 * 109.46920 * 180.02562 * 18 16 14 21 21 H 1.48497 * 109.47056 * 299.99704 * 18 16 14 22 22 C 1.46897 * 110.99893 * 293.95821 * 9 8 7 23 23 C 1.53007 * 117.49410 * 248.14992 * 22 9 8 24 24 C 1.53008 * 117.49781 * 179.49556 * 22 9 8 25 25 C 1.38284 * 120.15042 * 0.27507 * 7 6 5 26 26 C 1.38108 * 120.07562 * 359.44437 * 25 7 6 27 27 H 1.09006 * 109.47451 * 270.00187 * 1 2 3 28 28 H 1.08998 * 109.46940 * 29.99919 * 1 2 3 29 29 H 1.09001 * 109.47433 * 150.00334 * 1 2 3 30 30 H 1.08993 * 109.47203 * 269.99855 * 3 2 1 31 31 H 1.09005 * 109.47307 * 30.00067 * 3 2 1 32 32 H 1.08998 * 109.47320 * 149.99814 * 3 2 1 33 33 H 1.07997 * 120.04013 * 0.02562 * 5 4 2 34 34 H 1.07997 * 119.96310 * 179.97438 * 6 5 4 35 35 H 1.09005 * 109.46592 * 209.99888 * 8 7 6 36 36 H 1.09001 * 109.47214 * 329.99467 * 8 7 6 37 37 H 1.09000 * 109.47226 * 43.99013 * 10 9 8 38 38 H 1.09002 * 109.47182 * 163.99129 * 10 9 8 39 39 H 0.96998 * 120.00437 * 359.97438 * 13 11 10 40 40 H 0.96996 * 120.00050 * 180.02562 * 17 16 14 41 41 H 1.08999 * 115.55496 * 33.81525 * 22 9 8 42 42 H 1.08996 * 117.49850 * 0.02562 * 23 22 9 43 43 H 1.09000 * 117.49734 * 145.02245 * 23 22 9 44 44 H 1.08999 * 117.49231 * 214.97568 * 24 22 9 45 45 H 1.08999 * 117.49891 * 359.96430 * 24 22 9 46 46 H 1.08003 * 119.96460 * 179.70290 * 25 7 6 47 47 H 1.07996 * 120.04024 * 180.27671 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1634 -1.2096 0.0005 5 6 1.4703 -2.4135 0.0016 6 6 2.1640 -3.6078 0.0027 7 6 3.5468 -3.6059 0.0032 8 6 4.3003 -4.9111 0.0038 9 7 4.5457 -5.3355 -1.3809 10 6 5.4763 -6.4712 -1.4264 11 6 6.8796 -5.9808 -1.1788 12 8 7.0753 -4.8160 -0.9031 13 7 7.9173 -6.8366 -1.2638 14 6 9.1940 -6.3907 -1.0381 15 1 9.3682 -5.3535 -0.7925 16 6 10.2637 -7.2731 -1.1252 17 7 10.0518 -8.5353 -1.4236 18 14 12.0033 -6.6653 -0.8183 19 1 12.1008 -6.1182 0.5588 20 1 12.9562 -7.7939 -0.9718 21 1 12.3358 -5.6006 -1.7987 22 6 3.2858 -5.6596 -2.0632 23 6 3.0362 -7.1246 -2.4272 24 6 3.3686 -6.1092 -3.5234 25 6 4.2398 -2.4093 0.0084 26 6 3.5524 -1.2114 0.0015 27 1 -0.3634 0.0000 1.0277 28 1 -0.3633 0.8900 -0.5138 29 1 -0.3634 -0.8900 -0.5138 30 1 2.3792 1.5834 -1.0276 31 1 1.6084 2.0284 0.5139 32 1 3.1499 1.1384 0.5138 33 1 0.3903 -2.4156 0.0016 34 1 1.6259 -4.5441 0.0039 35 1 5.2525 -4.7805 0.5180 36 1 3.7111 -5.6706 0.5177 37 1 5.2037 -7.1953 -0.6587 38 1 5.4245 -6.9444 -2.4070 39 1 7.7609 -7.7683 -1.4840 40 1 10.7985 -9.1514 -1.4840 41 1 2.4242 -5.0602 -1.7692 42 1 3.8065 -7.8479 -2.1600 43 1 2.0103 -7.4889 -2.3731 44 1 2.5612 -5.8058 -4.1899 45 1 4.3578 -6.1640 -3.9779 46 1 5.3198 -2.4114 0.0137 47 1 4.0942 -0.2772 0.0011 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000731279942.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:28:04 Heat of formation + Delta-G solvation = 25.977630 kcal Electronic energy + Delta-G solvation = -26339.974449 eV Core-core repulsion = 22716.473955 eV Total energy + Delta-G solvation = -3623.500494 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.00174 -40.23354 -39.01314 -37.22131 -35.96225 -34.58147 -33.25629 -32.04576 -31.60774 -28.98299 -28.86126 -26.92685 -25.92646 -24.33449 -23.31862 -23.15412 -21.78462 -21.27888 -20.44042 -19.71097 -18.35311 -18.14033 -17.04760 -16.77760 -16.63445 -16.35155 -15.88495 -15.78260 -15.64321 -15.60730 -15.07803 -14.74424 -14.54008 -14.34362 -14.24268 -13.70438 -13.42926 -13.40992 -13.25041 -13.20376 -12.97128 -12.86461 -12.78097 -12.56920 -12.41969 -12.28665 -12.12923 -11.94517 -11.74832 -11.55861 -11.45042 -11.14212 -10.60142 -10.22302 -9.97983 -9.74939 -8.94935 -8.44374 -8.09038 -5.92787 0.59536 0.67986 1.39845 1.40879 1.52000 2.08332 2.28755 2.30105 2.63372 3.03480 3.09029 3.22014 3.55012 3.83713 3.93806 4.08300 4.09396 4.15976 4.16047 4.26477 4.29831 4.33530 4.42625 4.51619 4.53089 4.57095 4.60367 4.74247 4.78561 4.82644 4.85280 4.92290 4.95968 4.97348 5.01161 5.12193 5.24093 5.29327 5.40823 5.42097 5.54277 5.92182 5.94025 5.99296 6.12811 6.29820 6.41531 6.60639 6.63639 7.15449 7.59223 8.15839 8.72999 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.015979 B = 0.002962 C = 0.002583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1751.909987 B = 9450.092161 C =10838.839308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.090 3.910 2 N -0.646 5.646 3 C 0.089 3.911 4 C 0.205 3.795 5 C -0.199 4.199 6 C -0.065 4.065 7 C -0.137 4.137 8 C 0.112 3.888 9 N -0.498 5.498 10 C 0.055 3.945 11 C 0.442 3.558 12 O -0.610 6.610 13 N -0.577 5.577 14 C -0.330 4.330 15 H 0.078 0.922 16 C -0.014 4.014 17 N -0.922 5.922 18 Si 0.992 3.008 19 H -0.272 1.272 20 H -0.270 1.270 21 H -0.273 1.273 22 C 0.011 3.989 23 C -0.209 4.209 24 C -0.179 4.179 25 C -0.064 4.064 26 C -0.208 4.208 27 H 0.053 0.947 28 H 0.081 0.919 29 H 0.072 0.928 30 H 0.048 0.952 31 H 0.086 0.914 32 H 0.062 0.938 33 H 0.145 0.855 34 H 0.139 0.861 35 H 0.055 0.945 36 H 0.051 0.949 37 H 0.071 0.929 38 H 0.104 0.896 39 H 0.395 0.605 40 H 0.277 0.723 41 H 0.136 0.864 42 H 0.093 0.907 43 H 0.117 0.883 44 H 0.115 0.885 45 H 0.077 0.923 46 H 0.096 0.904 47 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.687 10.238 1.364 24.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.358 5.358 3 C -0.054 4.054 4 C 0.103 3.897 5 C -0.221 4.221 6 C -0.084 4.084 7 C -0.140 4.140 8 C -0.015 4.015 9 N -0.219 5.219 10 C -0.076 4.076 11 C 0.230 3.770 12 O -0.496 6.496 13 N -0.215 5.215 14 C -0.460 4.460 15 H 0.096 0.904 16 C -0.213 4.213 17 N -0.563 5.563 18 Si 0.815 3.185 19 H -0.197 1.197 20 H -0.194 1.194 21 H -0.198 1.198 22 C -0.097 4.097 23 C -0.248 4.248 24 C -0.216 4.216 25 C -0.083 4.083 26 C -0.231 4.231 27 H 0.072 0.928 28 H 0.100 0.900 29 H 0.091 0.909 30 H 0.067 0.933 31 H 0.105 0.895 32 H 0.081 0.919 33 H 0.163 0.837 34 H 0.157 0.843 35 H 0.074 0.926 36 H 0.069 0.931 37 H 0.088 0.912 38 H 0.122 0.878 39 H 0.228 0.772 40 H 0.086 0.914 41 H 0.153 0.847 42 H 0.111 0.889 43 H 0.135 0.865 44 H 0.134 0.866 45 H 0.095 0.905 46 H 0.114 0.886 47 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -22.296 11.448 1.297 25.097 hybrid contribution 1.153 -0.954 0.308 1.528 sum -21.143 10.494 1.605 23.658 Atomic orbital electron populations 1.21774 0.78083 1.03607 1.01746 1.46534 1.05988 1.02865 1.80426 1.21728 0.97445 0.84739 1.01460 1.17947 0.90852 0.86909 0.93973 1.20835 1.00393 0.90405 1.10466 1.20942 0.92399 0.98368 0.96732 1.19434 0.93976 0.93729 1.06826 1.20836 0.98613 0.93847 0.88199 1.61320 1.10275 1.33845 1.16488 1.21811 0.89747 0.92823 1.03184 1.20788 0.87390 0.86364 0.82502 1.90477 1.86097 1.19173 1.53804 1.41918 1.05633 1.11314 1.62586 1.19598 0.83571 0.96337 1.46460 0.90438 1.26016 1.03560 0.95154 0.96619 1.69669 1.34167 1.03742 1.48732 0.85014 0.76815 0.77814 0.78838 1.19711 1.19423 1.19839 1.22893 0.92768 0.96812 0.97258 1.23664 1.03878 0.93097 1.04144 1.23123 1.02859 1.03755 0.91902 1.20815 0.98977 0.92510 0.96003 1.20726 0.92899 0.98089 1.11353 0.92845 0.90019 0.90921 0.93328 0.89548 0.91936 0.83708 0.84285 0.92631 0.93137 0.91158 0.87794 0.77173 0.91368 0.84674 0.88903 0.86486 0.86637 0.90456 0.88590 0.85744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.05 10.19 127.77 1.30 2.35 16 2 N -0.65 -11.82 3.41 -747.29 -2.55 -14.37 16 3 C 0.09 1.31 10.19 127.77 1.30 2.61 16 4 C 0.21 4.94 6.55 38.21 0.25 5.19 16 5 C -0.20 -4.34 9.21 22.40 0.21 -4.14 16 6 C -0.07 -1.58 7.96 22.25 0.18 -1.40 16 7 C -0.14 -4.27 5.02 -19.84 -0.10 -4.37 16 8 C 0.11 3.82 4.72 85.56 0.40 4.22 16 9 N -0.50 -17.43 4.31 -880.05 -3.79 -21.22 16 10 C 0.06 2.06 4.12 85.56 0.35 2.41 16 11 C 0.44 22.04 7.52 87.66 0.66 22.70 16 12 O -0.61 -34.90 14.62 -3.07 -0.04 -34.95 16 13 N -0.58 -30.66 5.29 -306.99 -1.62 -32.28 16 14 C -0.33 -19.26 9.68 84.04 0.81 -18.45 16 15 H 0.08 4.81 7.16 -2.91 -0.02 4.79 16 16 C -0.01 -0.77 5.50 84.92 0.47 -0.30 16 17 N -0.92 -50.88 13.05 21.66 0.28 -50.60 16 18 Si 0.99 44.05 29.55 68.60 2.03 46.08 16 19 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 20 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 21 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 22 C 0.01 0.31 5.82 44.92 0.26 0.57 16 23 C -0.21 -4.60 9.57 30.62 0.29 -4.31 16 24 C -0.18 -4.40 9.90 30.62 0.30 -4.10 16 25 C -0.06 -2.15 9.69 22.25 0.22 -1.94 16 26 C -0.21 -5.92 9.21 22.40 0.21 -5.71 16 27 H 0.05 0.55 8.14 -2.38 -0.02 0.53 16 28 H 0.08 0.66 8.07 -2.39 -0.02 0.64 16 29 H 0.07 0.78 6.20 -2.39 -0.01 0.77 16 30 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 31 H 0.09 0.85 8.07 -2.38 -0.02 0.83 16 32 H 0.06 1.00 6.20 -2.39 -0.01 0.99 16 33 H 0.15 2.30 6.14 -2.91 -0.02 2.29 16 34 H 0.14 2.64 7.47 -2.91 -0.02 2.62 16 35 H 0.06 2.33 6.53 -2.38 -0.02 2.31 16 36 H 0.05 1.49 8.06 -2.39 -0.02 1.47 16 37 H 0.07 2.36 7.81 -2.39 -0.02 2.34 16 38 H 0.10 3.56 5.52 -2.39 -0.01 3.55 16 39 H 0.39 19.97 7.90 -92.71 -0.73 19.24 16 40 H 0.28 14.33 8.31 -92.71 -0.77 13.56 16 41 H 0.14 3.23 5.28 -2.39 -0.01 3.22 16 42 H 0.09 2.19 6.07 -2.39 -0.01 2.17 16 43 H 0.12 1.98 8.14 -2.39 -0.02 1.96 16 44 H 0.12 2.31 8.14 -2.39 -0.02 2.29 16 45 H 0.08 2.23 7.39 -2.39 -0.02 2.21 16 46 H 0.10 3.79 8.06 -2.91 -0.02 3.76 16 47 H 0.12 3.21 6.14 -2.91 -0.02 3.19 16 Total: -1.00 -71.35 375.34 1.68 -69.67 By element: Atomic # 1 Polarization: 42.07 SS G_CDS: 0.26 Total: 42.33 kcal Atomic # 6 Polarization: -11.78 SS G_CDS: 7.11 Total: -4.66 kcal Atomic # 7 Polarization: -110.80 SS G_CDS: -7.68 Total: -118.47 kcal Atomic # 8 Polarization: -34.90 SS G_CDS: -0.04 Total: -34.95 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 2.03 Total: 46.08 kcal Total: -71.35 1.68 -69.67 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731279942.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.649 kcal (2) G-P(sol) polarization free energy of solvation -71.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.671 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds