Wall clock time and date at job start Tue Mar 31 2020 11:46:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46490 * 119.99991 * 2 1 4 4 C 1.50702 * 109.47621 * 270.00308 * 3 2 1 5 5 H 1.08005 * 119.99540 * 0.02562 * 4 3 2 6 6 C 1.37867 * 120.00374 * 179.97438 * 4 3 2 7 7 N 1.31521 * 120.00019 * 0.02562 * 6 4 3 8 8 Si 1.86808 * 120.00251 * 179.97438 * 6 4 3 9 9 H 1.48501 * 109.46953 * 90.00209 * 8 6 4 10 10 H 1.48503 * 109.47041 * 210.00373 * 8 6 4 11 11 H 1.48503 * 109.46752 * 330.00351 * 8 6 4 12 12 C 1.34781 * 119.99998 * 180.02562 * 2 1 3 13 13 O 1.21584 * 119.99841 * 179.97438 * 12 2 1 14 14 N 1.34774 * 119.99948 * 359.97438 * 12 2 1 15 15 C 1.39944 * 119.99948 * 184.58320 * 14 12 2 16 16 C 1.38940 * 120.03350 * 324.90657 * 15 14 12 17 17 C 1.38147 * 120.08026 * 180.02562 * 16 15 14 18 18 C 1.38175 * 120.14371 * 359.97438 * 17 16 15 19 19 C 1.38948 * 120.06088 * 0.02562 * 18 17 16 20 20 N 1.39672 * 120.03361 * 180.02562 * 19 18 17 21 21 C 1.46842 * 111.00426 * 0.02562 * 20 19 18 22 22 C 1.53030 * 109.52195 * 185.83834 * 21 20 19 23 23 C 1.53116 * 109.28236 * 300.81790 * 22 21 20 24 24 C 1.53127 * 109.20939 * 57.62509 * 23 22 21 25 25 C 1.46848 * 110.99661 * 124.21712 * 20 19 18 26 26 C 1.38717 * 120.03017 * 145.19708 * 15 14 12 27 27 H 1.09004 * 109.46870 * 269.99282 * 1 2 3 28 28 H 1.08990 * 109.47359 * 29.99807 * 1 2 3 29 29 H 1.09007 * 109.46851 * 149.99749 * 1 2 3 30 30 H 1.09004 * 109.46941 * 30.00623 * 3 2 1 31 31 H 1.09000 * 109.47284 * 149.99852 * 3 2 1 32 32 H 0.97003 * 119.99796 * 179.97438 * 7 6 4 33 33 H 0.97000 * 120.00456 * 4.58721 * 14 12 2 34 34 H 1.08006 * 119.96239 * 0.02562 * 16 15 14 35 35 H 1.08000 * 119.92459 * 180.02562 * 17 16 15 36 36 H 1.07990 * 119.96704 * 180.02562 * 18 17 16 37 37 H 1.09001 * 109.46228 * 65.82016 * 21 20 19 38 38 H 1.09002 * 109.45613 * 305.85005 * 21 20 19 39 39 H 1.09007 * 109.50417 * 180.87878 * 22 21 20 40 40 H 1.09002 * 109.50620 * 60.76318 * 22 21 20 41 41 H 1.08998 * 109.52806 * 177.55889 * 23 22 21 42 42 H 1.09000 * 109.52413 * 297.69344 * 23 22 21 43 43 H 1.08998 * 109.50373 * 62.31846 * 24 23 22 44 44 H 1.09003 * 109.50316 * 182.43888 * 24 23 22 45 45 H 1.09001 * 109.46023 * 294.17619 * 25 20 19 46 46 H 1.08996 * 109.46586 * 54.14998 * 25 20 19 47 47 H 1.07996 * 120.07065 * 0.02562 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 2.4487 1.7038 -1.4208 5 1 2.0973 1.0962 -2.2417 6 6 3.1259 2.8780 -1.6727 7 7 3.5533 3.6181 -0.6730 8 14 3.4379 3.4170 -3.4339 9 1 2.3077 4.2593 -3.9013 10 1 4.6979 4.2005 -3.4959 11 1 3.5560 2.2197 -4.3044 12 6 2.1389 -1.1672 -0.0005 13 8 3.3548 -1.1672 -0.0010 14 7 1.4651 -2.3344 -0.0005 15 6 2.1615 -3.5444 0.0958 16 6 3.4061 -3.6803 -0.5066 17 6 4.0942 -4.8746 -0.4126 18 6 3.5477 -5.9375 0.2809 19 6 2.3034 -5.8081 0.8855 20 7 1.7519 -6.8827 1.5868 21 6 2.6493 -8.0447 1.5604 22 6 1.9536 -9.2430 2.2098 23 6 1.5850 -8.8921 3.6539 24 6 0.6900 -7.6496 3.6578 25 6 1.4223 -6.4979 2.9652 26 6 1.6071 -4.6113 0.7877 27 1 -0.3633 -0.0001 1.0277 28 1 -0.3633 0.8899 -0.5137 29 1 -0.3633 -0.8900 -0.5139 30 1 1.6084 2.0283 0.5140 31 1 3.1499 1.1383 0.5138 32 1 4.0301 4.4440 -0.8503 33 1 0.4974 -2.3358 -0.0673 34 1 3.8362 -2.8513 -1.0490 35 1 5.0616 -4.9773 -0.8815 36 1 4.0883 -6.8696 0.3529 37 1 3.5610 -7.8120 2.1106 38 1 2.9002 -8.2862 0.5275 39 1 2.6257 -10.1011 2.2041 40 1 1.0490 -9.4850 1.6519 41 1 1.0506 -9.7273 4.1068 42 1 2.4925 -8.6891 4.2225 43 1 -0.2350 -7.8657 3.1233 44 1 0.4601 -7.3699 4.6859 45 1 2.3400 -6.2727 3.5086 46 1 0.7819 -5.6161 2.9529 47 1 0.6375 -4.5097 1.2524 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000749999645.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:46:49 Heat of formation + Delta-G solvation = 12.268169 kcal Electronic energy + Delta-G solvation = -26346.003104 eV Core-core repulsion = 22721.908123 eV Total energy + Delta-G solvation = -3624.094981 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.59935 -39.67279 -37.71994 -35.10640 -34.49744 -33.42195 -32.50981 -31.47030 -29.79276 -28.65249 -27.60119 -25.80124 -24.78033 -23.98024 -23.02777 -21.74268 -21.29641 -20.02513 -19.24066 -18.04094 -17.24127 -16.55405 -16.11360 -15.61174 -15.47629 -15.08802 -14.87138 -14.65274 -14.49497 -14.22874 -13.89950 -13.68826 -13.46991 -13.31252 -13.17326 -12.78730 -12.53512 -12.20230 -12.19106 -11.91044 -11.67447 -11.44708 -11.39394 -11.19258 -11.10132 -10.91353 -10.77391 -10.68300 -10.57277 -10.15987 -10.03923 -9.64653 -9.56514 -9.17181 -8.43415 -8.14417 -7.76553 -7.50461 -6.04038 -4.08816 1.52976 1.58331 3.14734 3.30451 3.37292 3.42331 3.58578 3.75343 4.13890 4.40154 4.44580 4.51018 4.54791 4.61394 4.85115 5.00860 5.07012 5.14525 5.21439 5.29490 5.30066 5.36266 5.45367 5.48624 5.53744 5.54839 5.60275 5.72133 5.74357 5.76611 5.82682 5.84182 5.92818 6.02486 6.11731 6.26224 6.50581 6.56714 6.79034 6.87868 6.92268 7.10933 7.35272 7.42993 7.49975 7.67409 7.93862 8.22864 8.57615 8.92017 9.23975 9.56642 11.03816 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.028281 B = 0.002536 C = 0.002414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 989.839029 B =11040.269633 C =11597.178905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.613 5.613 3 C 0.259 3.741 4 C -0.526 4.526 5 H 0.057 0.943 6 C 0.061 3.939 7 N -0.895 5.895 8 Si 0.898 3.102 9 H -0.281 1.281 10 H -0.285 1.285 11 H -0.274 1.274 12 C 0.698 3.302 13 O -0.566 6.566 14 N -0.697 5.697 15 C 0.203 3.797 16 C -0.143 4.143 17 C -0.077 4.077 18 C -0.197 4.197 19 C 0.124 3.876 20 N -0.487 5.487 21 C 0.051 3.949 22 C -0.118 4.118 23 C -0.123 4.123 24 C -0.119 4.119 25 C 0.057 3.943 26 C -0.176 4.176 27 H 0.045 0.955 28 H 0.079 0.921 29 H 0.050 0.950 30 H 0.034 0.966 31 H 0.046 0.954 32 H 0.263 0.737 33 H 0.401 0.599 34 H 0.144 0.856 35 H 0.122 0.878 36 H 0.122 0.878 37 H 0.044 0.956 38 H 0.083 0.917 39 H 0.069 0.931 40 H 0.071 0.929 41 H 0.064 0.936 42 H 0.060 0.940 43 H 0.072 0.928 44 H 0.069 0.931 45 H 0.042 0.958 46 H 0.082 0.918 47 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.039 -23.918 7.139 25.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.348 5.348 3 C 0.140 3.860 4 C -0.565 4.565 5 H 0.075 0.925 6 C -0.141 4.141 7 N -0.534 5.534 8 Si 0.726 3.274 9 H -0.207 1.207 10 H -0.211 1.211 11 H -0.199 1.199 12 C 0.400 3.600 13 O -0.442 6.442 14 N -0.346 5.346 15 C 0.106 3.894 16 C -0.165 4.165 17 C -0.096 4.096 18 C -0.218 4.218 19 C 0.026 3.974 20 N -0.203 5.203 21 C -0.076 4.076 22 C -0.156 4.156 23 C -0.161 4.161 24 C -0.157 4.157 25 C -0.068 4.068 26 C -0.200 4.200 27 H 0.064 0.936 28 H 0.097 0.903 29 H 0.068 0.932 30 H 0.052 0.948 31 H 0.064 0.936 32 H 0.073 0.927 33 H 0.238 0.762 34 H 0.162 0.838 35 H 0.140 0.860 36 H 0.139 0.861 37 H 0.062 0.938 38 H 0.101 0.899 39 H 0.087 0.913 40 H 0.090 0.910 41 H 0.083 0.917 42 H 0.079 0.921 43 H 0.090 0.910 44 H 0.088 0.912 45 H 0.060 0.940 46 H 0.100 0.900 47 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -6.542 -23.768 7.024 25.633 hybrid contribution 0.245 0.653 -0.714 0.998 sum -6.297 -23.115 6.310 24.774 Atomic orbital electron populations 1.21594 0.81668 1.02377 1.00409 1.47509 1.05735 1.06331 1.75210 1.19255 0.92397 0.76828 0.97514 1.21449 1.36512 1.06215 0.92349 0.92478 1.24932 0.95352 0.96393 0.97443 1.69936 1.38419 1.14337 1.30705 0.86493 0.77670 0.78573 0.84655 1.20666 1.21074 1.19907 1.15914 0.85575 0.80034 0.78519 1.90887 1.11313 1.85465 1.56580 1.42983 1.10010 1.03764 1.77846 1.17356 0.92984 0.84564 0.94458 1.21421 0.95347 0.98465 1.01230 1.20888 0.99147 0.92187 0.97376 1.21152 0.95148 1.00126 1.05388 1.18491 0.91784 0.89929 0.97203 1.59032 1.42518 1.04705 1.14063 1.22254 0.93758 0.90024 1.01525 1.21622 1.01186 0.96854 0.95950 1.21604 0.99776 0.97948 0.96773 1.21634 0.99163 0.94640 1.00216 1.22232 0.99777 0.98440 0.86389 1.20335 1.01752 0.92912 1.04962 0.93641 0.90252 0.93163 0.94757 0.93644 0.92706 0.76206 0.83819 0.85974 0.86064 0.93754 0.89912 0.91275 0.90992 0.91699 0.92145 0.90958 0.91199 0.93951 0.90005 0.85922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.30 10.24 59.85 0.61 1.92 16 2 N -0.61 -13.11 2.86 -188.74 -0.54 -13.65 16 3 C 0.26 6.80 5.16 -5.20 -0.03 6.77 16 4 C -0.53 -14.94 9.39 -34.44 -0.32 -15.26 16 5 H 0.06 1.63 7.81 -52.48 -0.41 1.22 16 6 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 7 N -0.89 -26.61 13.29 55.43 0.74 -25.87 16 8 Si 0.90 21.94 29.54 -169.99 -5.02 16.92 16 9 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 10 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 11 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 12 C 0.70 15.07 8.12 -86.92 -0.71 14.36 16 13 O -0.57 -14.55 13.35 5.29 0.07 -14.48 16 14 N -0.70 -11.64 5.21 -14.24 -0.07 -11.72 16 15 C 0.20 3.32 6.30 -83.72 -0.53 2.79 16 16 C -0.14 -2.48 8.69 -39.36 -0.34 -2.82 16 17 C -0.08 -1.09 10.03 -39.64 -0.40 -1.49 16 18 C -0.20 -2.49 8.82 -39.34 -0.35 -2.84 16 19 C 0.12 1.58 5.64 -83.81 -0.47 1.11 16 20 N -0.49 -5.17 4.70 -171.17 -0.80 -5.98 16 21 C 0.05 0.45 4.15 -3.84 -0.02 0.43 16 22 C -0.12 -0.82 6.09 -26.66 -0.16 -0.98 16 23 C -0.12 -0.81 6.00 -26.61 -0.16 -0.97 16 24 C -0.12 -0.87 6.10 -26.64 -0.16 -1.03 16 25 C 0.06 0.54 5.25 -3.83 -0.02 0.52 16 26 C -0.18 -2.41 9.07 -39.19 -0.36 -2.77 16 27 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 28 H 0.08 1.26 8.07 -51.93 -0.42 0.84 16 29 H 0.05 0.63 6.30 -51.93 -0.33 0.30 16 30 H 0.03 0.90 8.07 -51.93 -0.42 0.48 16 31 H 0.05 1.34 7.42 -51.93 -0.39 0.96 16 32 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 33 H 0.40 5.34 6.52 -40.82 -0.27 5.08 16 34 H 0.14 2.91 6.22 -52.48 -0.33 2.58 16 35 H 0.12 1.49 8.06 -52.49 -0.42 1.07 16 36 H 0.12 1.26 5.80 -52.49 -0.30 0.96 16 37 H 0.04 0.39 7.73 -51.93 -0.40 -0.01 16 38 H 0.08 0.71 6.98 -51.93 -0.36 0.35 16 39 H 0.07 0.39 8.14 -51.92 -0.42 -0.03 16 40 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 41 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 42 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 43 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 44 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 45 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 46 H 0.08 0.78 6.72 -51.93 -0.35 0.43 16 47 H 0.12 1.46 7.17 -52.49 -0.38 1.08 16 LS Contribution 371.08 15.07 5.59 5.59 Total: -1.00 -33.32 371.08 -10.83 -44.15 By element: Atomic # 1 Polarization: 10.94 SS G_CDS: -7.29 Total: 3.66 kcal Atomic # 6 Polarization: 4.88 SS G_CDS: -3.50 Total: 1.38 kcal Atomic # 7 Polarization: -56.53 SS G_CDS: -0.68 Total: -57.22 kcal Atomic # 8 Polarization: -14.55 SS G_CDS: 0.07 Total: -14.48 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -33.32 -10.83 -44.15 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000749999645.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.419 kcal (2) G-P(sol) polarization free energy of solvation -33.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.151 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds