Wall clock time and date at job start Tue Mar 31 2020 11:46:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46490 * 119.99991 * 2 1 4 4 C 1.50702 * 109.47621 * 270.00308 * 3 2 1 5 5 H 1.08005 * 119.99540 * 0.02562 * 4 3 2 6 6 C 1.37867 * 120.00374 * 179.97438 * 4 3 2 7 7 N 1.31521 * 120.00019 * 0.02562 * 6 4 3 8 8 Si 1.86808 * 120.00251 * 179.97438 * 6 4 3 9 9 H 1.48501 * 109.46953 * 90.00209 * 8 6 4 10 10 H 1.48503 * 109.47041 * 210.00373 * 8 6 4 11 11 H 1.48503 * 109.46752 * 330.00351 * 8 6 4 12 12 C 1.34781 * 119.99998 * 180.02562 * 2 1 3 13 13 O 1.21584 * 119.99841 * 179.97438 * 12 2 1 14 14 N 1.34774 * 119.99948 * 359.97438 * 12 2 1 15 15 C 1.39944 * 119.99948 * 184.58320 * 14 12 2 16 16 C 1.38940 * 120.03350 * 324.90657 * 15 14 12 17 17 C 1.38147 * 120.08026 * 180.02562 * 16 15 14 18 18 C 1.38175 * 120.14371 * 359.97438 * 17 16 15 19 19 C 1.38948 * 120.06088 * 0.02562 * 18 17 16 20 20 N 1.39672 * 120.03361 * 180.02562 * 19 18 17 21 21 C 1.46842 * 111.00426 * 0.02562 * 20 19 18 22 22 C 1.53030 * 109.52195 * 185.83834 * 21 20 19 23 23 C 1.53116 * 109.28236 * 300.81790 * 22 21 20 24 24 C 1.53127 * 109.20939 * 57.62509 * 23 22 21 25 25 C 1.46848 * 110.99661 * 124.21712 * 20 19 18 26 26 C 1.38717 * 120.03017 * 145.19708 * 15 14 12 27 27 H 1.09004 * 109.46870 * 269.99282 * 1 2 3 28 28 H 1.08990 * 109.47359 * 29.99807 * 1 2 3 29 29 H 1.09007 * 109.46851 * 149.99749 * 1 2 3 30 30 H 1.09004 * 109.46941 * 30.00623 * 3 2 1 31 31 H 1.09000 * 109.47284 * 149.99852 * 3 2 1 32 32 H 0.97003 * 119.99796 * 179.97438 * 7 6 4 33 33 H 0.97000 * 120.00456 * 4.58721 * 14 12 2 34 34 H 1.08006 * 119.96239 * 0.02562 * 16 15 14 35 35 H 1.08000 * 119.92459 * 180.02562 * 17 16 15 36 36 H 1.07990 * 119.96704 * 180.02562 * 18 17 16 37 37 H 1.09001 * 109.46228 * 65.82016 * 21 20 19 38 38 H 1.09002 * 109.45613 * 305.85005 * 21 20 19 39 39 H 1.09007 * 109.50417 * 180.87878 * 22 21 20 40 40 H 1.09002 * 109.50620 * 60.76318 * 22 21 20 41 41 H 1.08998 * 109.52806 * 177.55889 * 23 22 21 42 42 H 1.09000 * 109.52413 * 297.69344 * 23 22 21 43 43 H 1.08998 * 109.50373 * 62.31846 * 24 23 22 44 44 H 1.09003 * 109.50316 * 182.43888 * 24 23 22 45 45 H 1.09001 * 109.46023 * 294.17619 * 25 20 19 46 46 H 1.08996 * 109.46586 * 54.14998 * 25 20 19 47 47 H 1.07996 * 120.07065 * 0.02562 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 2.4487 1.7038 -1.4208 5 1 2.0973 1.0962 -2.2417 6 6 3.1259 2.8780 -1.6727 7 7 3.5533 3.6181 -0.6730 8 14 3.4379 3.4170 -3.4339 9 1 2.3077 4.2593 -3.9013 10 1 4.6979 4.2005 -3.4959 11 1 3.5560 2.2197 -4.3044 12 6 2.1389 -1.1672 -0.0005 13 8 3.3548 -1.1672 -0.0010 14 7 1.4651 -2.3344 -0.0005 15 6 2.1615 -3.5444 0.0958 16 6 3.4061 -3.6803 -0.5066 17 6 4.0942 -4.8746 -0.4126 18 6 3.5477 -5.9375 0.2809 19 6 2.3034 -5.8081 0.8855 20 7 1.7519 -6.8827 1.5868 21 6 2.6493 -8.0447 1.5604 22 6 1.9536 -9.2430 2.2098 23 6 1.5850 -8.8921 3.6539 24 6 0.6900 -7.6496 3.6578 25 6 1.4223 -6.4979 2.9652 26 6 1.6071 -4.6113 0.7877 27 1 -0.3633 -0.0001 1.0277 28 1 -0.3633 0.8899 -0.5137 29 1 -0.3633 -0.8900 -0.5139 30 1 1.6084 2.0283 0.5140 31 1 3.1499 1.1383 0.5138 32 1 4.0301 4.4440 -0.8503 33 1 0.4974 -2.3358 -0.0673 34 1 3.8362 -2.8513 -1.0490 35 1 5.0616 -4.9773 -0.8815 36 1 4.0883 -6.8696 0.3529 37 1 3.5610 -7.8120 2.1106 38 1 2.9002 -8.2862 0.5275 39 1 2.6257 -10.1011 2.2041 40 1 1.0490 -9.4850 1.6519 41 1 1.0506 -9.7273 4.1068 42 1 2.4925 -8.6891 4.2225 43 1 -0.2350 -7.8657 3.1233 44 1 0.4601 -7.3699 4.6859 45 1 2.3400 -6.2727 3.5086 46 1 0.7819 -5.6161 2.9529 47 1 0.6375 -4.5097 1.2524 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000749999645.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:46:48 Heat of formation + Delta-G solvation = -8.331323 kcal Electronic energy + Delta-G solvation = -26346.896365 eV Core-core repulsion = 22721.908123 eV Total energy + Delta-G solvation = -3624.988242 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.81358 -40.90879 -38.81629 -36.72172 -35.93343 -34.75417 -34.20452 -32.22223 -30.92545 -29.96096 -29.23269 -27.36985 -25.66690 -25.21224 -24.45242 -22.80027 -22.46236 -20.94948 -20.48272 -19.35258 -18.69684 -18.56003 -17.39950 -16.89640 -16.62871 -16.45312 -16.24759 -15.81036 -15.63112 -15.21849 -14.96638 -14.81640 -14.61772 -14.47299 -14.28564 -14.05200 -13.90696 -13.57076 -13.46580 -13.18200 -13.09145 -12.85932 -12.70662 -12.54080 -12.41335 -12.19876 -12.11487 -11.75951 -11.70356 -11.43059 -11.35275 -11.23577 -10.94517 -10.63936 -10.50727 -9.59270 -9.17340 -8.68891 -8.21920 -6.36907 0.36693 0.45152 1.36081 1.39257 1.49291 1.69435 2.15287 2.38612 2.66072 2.94058 3.06421 3.11346 3.80710 3.88429 4.02849 4.03720 4.20393 4.23465 4.27152 4.34704 4.40849 4.46108 4.57217 4.59901 4.63607 4.64883 4.73053 4.81427 4.88461 4.89475 4.95428 4.96789 5.11667 5.18873 5.22195 5.26759 5.31687 5.38989 5.41968 5.49527 5.53808 5.61509 5.78561 5.90156 6.05475 6.07660 6.10144 6.35586 6.71483 7.03288 7.30060 7.61290 8.84498 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.028281 B = 0.002536 C = 0.002414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 989.839029 B =11040.269633 C =11597.178905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.620 5.620 3 C 0.276 3.724 4 C -0.542 4.542 5 H 0.051 0.949 6 C 0.008 3.992 7 N -0.927 5.927 8 Si 0.968 3.032 9 H -0.262 1.262 10 H -0.280 1.280 11 H -0.276 1.276 12 C 0.693 3.307 13 O -0.618 6.618 14 N -0.676 5.676 15 C 0.181 3.819 16 C -0.175 4.175 17 C -0.078 4.078 18 C -0.189 4.189 19 C 0.128 3.872 20 N -0.489 5.489 21 C 0.045 3.955 22 C -0.114 4.114 23 C -0.123 4.123 24 C -0.114 4.114 25 C 0.054 3.946 26 C -0.169 4.169 27 H 0.073 0.927 28 H 0.075 0.925 29 H 0.084 0.916 30 H 0.031 0.969 31 H -0.001 1.001 32 H 0.268 0.732 33 H 0.419 0.581 34 H 0.104 0.896 35 H 0.138 0.862 36 H 0.149 0.851 37 H 0.045 0.955 38 H 0.086 0.914 39 H 0.085 0.915 40 H 0.069 0.931 41 H 0.078 0.922 42 H 0.060 0.940 43 H 0.071 0.929 44 H 0.081 0.919 45 H 0.035 0.965 46 H 0.079 0.921 47 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.616 -26.447 7.232 28.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.355 5.355 3 C 0.154 3.846 4 C -0.581 4.581 5 H 0.069 0.931 6 C -0.191 4.191 7 N -0.567 5.567 8 Si 0.792 3.208 9 H -0.187 1.187 10 H -0.206 1.206 11 H -0.201 1.201 12 C 0.395 3.605 13 O -0.498 6.498 14 N -0.327 5.327 15 C 0.085 3.915 16 C -0.197 4.197 17 C -0.097 4.097 18 C -0.211 4.211 19 C 0.029 3.971 20 N -0.204 5.204 21 C -0.081 4.081 22 C -0.152 4.152 23 C -0.161 4.161 24 C -0.152 4.152 25 C -0.071 4.071 26 C -0.192 4.192 27 H 0.091 0.909 28 H 0.094 0.906 29 H 0.103 0.897 30 H 0.049 0.951 31 H 0.018 0.982 32 H 0.076 0.924 33 H 0.259 0.741 34 H 0.122 0.878 35 H 0.156 0.844 36 H 0.167 0.833 37 H 0.064 0.936 38 H 0.104 0.896 39 H 0.104 0.896 40 H 0.088 0.912 41 H 0.097 0.903 42 H 0.078 0.922 43 H 0.090 0.910 44 H 0.100 0.900 45 H 0.054 0.946 46 H 0.097 0.903 47 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -8.199 -26.353 7.130 28.505 hybrid contribution 0.723 1.288 -0.663 1.619 sum -7.476 -25.066 6.466 26.944 Atomic orbital electron populations 1.21904 0.77902 1.03919 1.02708 1.47377 1.08006 1.04818 1.75295 1.18713 0.90943 0.78890 0.96055 1.21691 1.36894 1.06454 0.93028 0.93102 1.25837 0.94893 0.96419 1.01936 1.70049 1.38923 1.14795 1.32942 0.85419 0.78148 0.78114 0.79124 1.18671 1.20569 1.20072 1.16092 0.85104 0.81113 0.78196 1.90853 1.13801 1.86407 1.58701 1.42597 1.10629 1.02484 1.76989 1.17523 0.93163 0.84890 0.95939 1.21256 0.96715 0.98674 1.03047 1.21057 0.99640 0.91556 0.97426 1.21446 0.95138 1.00488 1.03995 1.18722 0.91512 0.90180 0.96671 1.59066 1.42495 1.04318 1.14526 1.22397 0.93752 0.89874 1.02074 1.21614 1.01254 0.96459 0.95859 1.21622 0.99788 0.98029 0.96647 1.21624 0.98915 0.94105 1.00574 1.22316 0.99698 0.99457 0.85662 1.20451 1.02430 0.92285 1.04055 0.90875 0.90646 0.89723 0.95120 0.98246 0.92359 0.74146 0.87811 0.84448 0.83319 0.93634 0.89589 0.89629 0.91238 0.90320 0.92164 0.90989 0.90007 0.94623 0.90258 0.83894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.33 10.24 127.77 1.31 3.64 16 2 N -0.62 -27.21 2.86 -869.31 -2.48 -29.69 16 3 C 0.28 15.13 5.16 85.64 0.44 15.57 16 4 C -0.54 -31.72 9.39 25.60 0.24 -31.48 16 5 H 0.05 2.97 7.81 -2.91 -0.02 2.95 16 6 C 0.01 0.48 5.46 84.65 0.46 0.94 16 7 N -0.93 -56.52 13.29 21.44 0.28 -56.23 16 8 Si 0.97 45.55 29.54 68.60 2.03 47.58 16 9 H -0.26 -11.49 7.11 99.48 0.71 -10.79 16 10 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 11 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 12 C 0.69 31.09 8.12 179.05 1.45 32.54 16 13 O -0.62 -33.91 13.35 -3.98 -0.05 -33.96 16 14 N -0.68 -22.70 5.21 -317.24 -1.65 -24.36 16 15 C 0.18 5.96 6.30 38.13 0.24 6.20 16 16 C -0.18 -6.36 8.69 22.42 0.19 -6.16 16 17 C -0.08 -2.22 10.03 22.23 0.22 -1.99 16 18 C -0.19 -4.49 8.82 22.42 0.20 -4.29 16 19 C 0.13 3.03 5.64 38.20 0.22 3.24 16 20 N -0.49 -9.15 4.70 -695.47 -3.27 -12.42 16 21 C 0.05 0.66 4.15 86.32 0.36 1.02 16 22 C -0.11 -1.22 6.09 30.64 0.19 -1.04 16 23 C -0.12 -1.24 6.00 30.68 0.18 -1.06 16 24 C -0.11 -1.35 6.10 30.65 0.19 -1.16 16 25 C 0.05 0.89 5.25 86.33 0.45 1.34 16 26 C -0.17 -4.40 9.07 22.52 0.20 -4.20 16 27 H 0.07 1.80 8.14 -2.38 -0.02 1.78 16 28 H 0.07 2.33 8.07 -2.39 -0.02 2.31 16 29 H 0.08 1.92 6.30 -2.38 -0.02 1.91 16 30 H 0.03 1.68 8.07 -2.38 -0.02 1.66 16 31 H 0.00 -0.04 7.42 -2.39 -0.02 -0.06 16 32 H 0.27 15.26 8.31 -92.71 -0.77 14.49 16 33 H 0.42 10.57 6.52 -92.71 -0.60 9.96 16 34 H 0.10 4.59 6.22 -2.91 -0.02 4.58 16 35 H 0.14 3.35 8.06 -2.91 -0.02 3.33 16 36 H 0.15 2.68 5.80 -2.92 -0.02 2.66 16 37 H 0.05 0.67 7.73 -2.39 -0.02 0.66 16 38 H 0.09 1.21 6.98 -2.39 -0.02 1.19 16 39 H 0.09 0.67 8.14 -2.38 -0.02 0.65 16 40 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 41 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 42 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 43 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 44 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 45 H 0.04 0.64 8.14 -2.39 -0.02 0.63 16 46 H 0.08 1.34 6.72 -2.39 -0.02 1.32 16 47 H 0.14 3.07 7.17 -2.91 -0.02 3.05 16 Total: -1.00 -76.30 371.08 1.77 -74.53 By element: Atomic # 1 Polarization: 21.08 SS G_CDS: 0.37 Total: 21.45 kcal Atomic # 6 Polarization: 6.55 SS G_CDS: 6.55 Total: 13.10 kcal Atomic # 7 Polarization: -115.58 SS G_CDS: -7.12 Total: -122.70 kcal Atomic # 8 Polarization: -33.91 SS G_CDS: -0.05 Total: -33.96 kcal Atomic # 14 Polarization: 45.55 SS G_CDS: 2.03 Total: 47.58 kcal Total: -76.30 1.77 -74.53 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000749999645.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.201 kcal (2) G-P(sol) polarization free energy of solvation -76.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.532 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds