Wall clock time and date at job start Tue Mar 31 2020 11:44:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46506 * 120.00098 * 2 1 4 4 C 1.50699 * 109.46928 * 269.99904 * 3 2 1 5 5 H 1.08003 * 119.99963 * 0.02562 * 4 3 2 6 6 C 1.37873 * 119.99865 * 179.97438 * 4 3 2 7 7 N 1.31514 * 120.00518 * 0.02562 * 6 4 3 8 8 Si 1.86803 * 119.99987 * 179.97438 * 6 4 3 9 9 H 1.48501 * 109.46948 * 0.02562 * 8 6 4 10 10 H 1.48501 * 109.47174 * 120.00320 * 8 6 4 11 11 H 1.48497 * 109.47378 * 240.00235 * 8 6 4 12 12 C 1.39589 * 120.00361 * 179.97438 * 2 1 3 13 13 C 1.39049 * 119.92080 * 179.72683 * 12 2 1 14 14 C 1.37788 * 120.07724 * 179.76352 * 13 12 2 15 15 C 1.39724 * 119.92061 * 0.51177 * 14 13 12 16 16 C 1.47462 * 120.08254 * 179.71919 * 15 14 13 17 17 N 1.29756 * 119.99774 * 0.02562 * 16 15 14 18 18 N 1.40107 * 119.99700 * 180.02562 * 17 16 15 19 19 C 1.46493 * 119.99712 * 179.97438 * 18 17 16 20 20 C 1.53180 * 109.54292 * 269.55270 * 19 18 17 21 21 C 1.53092 * 109.16510 * 183.15685 * 20 19 18 22 22 O 1.42896 * 109.41841 * 57.60269 * 21 20 19 23 23 C 1.42899 * 114.09922 * 298.84711 * 22 21 20 24 24 C 1.53089 * 109.41662 * 61.15532 * 23 22 21 25 25 C 1.39728 * 119.83960 * 359.73979 * 15 14 13 26 26 C 1.37783 * 119.91714 * 0.02562 * 25 15 14 27 27 H 1.08999 * 109.46532 * 90.00087 * 1 2 3 28 28 H 1.09000 * 109.46877 * 210.00112 * 1 2 3 29 29 H 1.09000 * 109.47251 * 330.00217 * 1 2 3 30 30 H 1.09004 * 109.47073 * 29.99732 * 3 2 1 31 31 H 1.09000 * 109.47212 * 149.99814 * 3 2 1 32 32 H 0.96992 * 120.00316 * 179.97438 * 7 6 4 33 33 H 1.07995 * 119.96060 * 359.97438 * 13 12 2 34 34 H 1.08006 * 120.03527 * 180.24823 * 14 13 12 35 35 H 1.08002 * 120.00345 * 180.02562 * 16 15 14 36 36 H 0.97001 * 119.99817 * 359.97438 * 18 17 16 37 37 H 1.09002 * 109.54727 * 29.81376 * 19 18 17 38 38 H 1.09002 * 109.51753 * 303.05861 * 20 19 18 39 39 H 1.08995 * 109.52569 * 63.24829 * 20 19 18 40 40 H 1.09006 * 109.48039 * 297.62232 * 21 20 19 41 41 H 1.09002 * 109.48170 * 177.59207 * 21 20 19 42 42 H 1.09001 * 109.48168 * 301.16865 * 23 22 21 43 43 H 1.09005 * 109.48981 * 181.14673 * 23 22 21 44 44 H 1.09005 * 109.51880 * 182.48761 * 24 23 22 45 45 H 1.08999 * 109.51969 * 62.29953 * 24 23 22 46 46 H 1.08004 * 120.04600 * 179.97438 * 25 15 14 47 47 H 1.08003 * 119.96213 * 179.97438 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2688 0.0000 4 6 2.4487 1.7037 -1.4208 5 1 2.0974 1.0961 -2.2417 6 6 3.1260 2.8779 -1.6728 7 7 3.5534 3.6181 -0.6732 8 14 3.4380 3.4167 -3.4340 9 1 2.8609 2.4162 -4.3673 10 1 2.8000 4.7371 -3.6680 11 1 4.9006 3.5256 -3.6667 12 6 2.1630 -1.2088 0.0005 13 6 3.5535 -1.2068 -0.0052 14 6 4.2458 -2.3982 0.0002 15 6 3.5489 -3.6092 0.0007 16 6 4.2862 -4.8863 0.0003 17 7 5.5838 -4.8862 -0.0001 18 7 6.2843 -6.0996 -0.0010 19 6 7.7492 -6.0996 -0.0020 20 6 8.2607 -6.1102 -1.4458 21 6 9.7895 -6.1897 -1.4369 22 8 10.2003 -7.3584 -0.7246 23 6 9.7909 -7.3814 0.6443 24 6 8.2622 -7.3499 0.7190 25 6 2.1516 -3.6073 0.0012 26 6 1.4661 -2.4121 0.0006 27 1 -0.3632 0.0000 -1.0277 28 1 -0.3633 -0.8900 0.5139 29 1 -0.3634 0.8900 0.5138 30 1 1.6084 2.0285 0.5138 31 1 3.1500 1.1384 0.5139 32 1 4.0302 4.4439 -0.8505 33 1 4.0915 -0.2704 -0.0105 34 1 5.3259 -2.3958 -0.0002 35 1 3.7462 -5.8216 0.0002 36 1 5.7992 -6.9396 -0.0011 37 1 8.1142 -5.2085 0.5089 38 1 7.8540 -6.9752 -1.9699 39 1 7.9464 -5.1966 -1.9504 40 1 10.1967 -5.3044 -0.9483 41 1 10.1569 -6.2407 -2.4618 42 1 10.1981 -6.5118 1.1602 43 1 10.1594 -8.2910 1.1188 44 1 7.9490 -7.3228 1.7627 45 1 7.8557 -8.2399 0.2387 46 1 1.6096 -4.5415 0.0011 47 1 0.3861 -2.4098 0.0006 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000757599064.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:44:43 Heat of formation + Delta-G solvation = 24.730146 kcal Electronic energy + Delta-G solvation = -25294.470694 eV Core-core repulsion = 21670.916104 eV Total energy + Delta-G solvation = -3623.554589 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.67165 -38.94364 -36.90385 -35.65092 -33.96502 -32.68972 -31.43137 -30.52423 -30.49156 -28.29091 -27.75388 -25.33665 -24.11738 -23.88243 -22.92605 -21.85282 -20.92592 -20.63273 -19.41376 -17.08188 -16.72695 -16.57696 -16.44875 -16.29736 -15.41544 -15.01230 -15.00454 -14.54705 -14.24903 -14.18576 -13.88098 -13.72392 -13.40776 -12.94672 -12.90994 -12.72763 -12.59515 -12.15513 -11.93326 -11.66922 -11.58309 -11.51534 -11.27399 -11.23589 -11.02851 -10.86391 -10.73155 -10.66269 -10.31375 -10.05293 -9.95644 -9.84067 -9.69272 -9.07856 -8.52129 -8.32376 -7.84734 -6.39520 -6.01150 -4.18648 1.62051 2.12240 2.90491 3.07558 3.25175 3.33469 3.38433 3.56156 4.10044 4.39211 4.40129 4.54806 4.62327 4.64000 4.81864 4.90345 5.06305 5.11040 5.16719 5.20444 5.34453 5.36670 5.40066 5.52233 5.53467 5.63787 5.69274 5.74650 5.83198 5.97671 6.02770 6.08000 6.17575 6.26342 6.37575 6.48687 6.61786 6.85675 6.95186 6.99102 7.16463 7.18786 7.25089 7.34578 7.54166 7.79815 8.12902 8.21372 8.42192 8.61457 8.90163 9.48295 10.94419 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.013415 B = 0.002476 C = 0.002177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2086.723945 B =11304.599806 C =12856.569344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.098 3.902 2 N -0.611 5.611 3 C 0.246 3.754 4 C -0.530 4.530 5 H 0.060 0.940 6 C 0.061 3.939 7 N -0.895 5.895 8 Si 0.896 3.104 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.282 1.282 12 C 0.251 3.749 13 C -0.193 4.193 14 C -0.036 4.036 15 C -0.137 4.137 16 C 0.095 3.905 17 N -0.248 5.248 18 N -0.667 5.667 19 C 0.189 3.811 20 C -0.171 4.171 21 C 0.062 3.938 22 O -0.385 6.385 23 C 0.066 3.934 24 C -0.164 4.164 25 C -0.048 4.048 26 C -0.225 4.225 27 H 0.043 0.957 28 H 0.055 0.945 29 H 0.062 0.938 30 H 0.031 0.969 31 H 0.038 0.962 32 H 0.264 0.736 33 H 0.134 0.866 34 H 0.121 0.879 35 H 0.098 0.902 36 H 0.369 0.631 37 H 0.082 0.918 38 H 0.069 0.931 39 H 0.079 0.921 40 H 0.054 0.946 41 H 0.095 0.905 42 H 0.054 0.946 43 H 0.096 0.904 44 H 0.079 0.921 45 H 0.073 0.927 46 H 0.112 0.888 47 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.445 -20.481 3.326 21.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.315 5.315 3 C 0.127 3.873 4 C -0.569 4.569 5 H 0.078 0.922 6 C -0.141 4.141 7 N -0.534 5.534 8 Si 0.724 3.276 9 H -0.197 1.197 10 H -0.210 1.210 11 H -0.208 1.208 12 C 0.142 3.858 13 C -0.216 4.216 14 C -0.057 4.057 15 C -0.142 4.142 16 C -0.116 4.116 17 N -0.054 5.054 18 N -0.403 5.403 19 C 0.083 3.917 20 C -0.211 4.211 21 C -0.015 4.015 22 O -0.304 6.304 23 C -0.012 4.012 24 C -0.203 4.203 25 C -0.070 4.070 26 C -0.248 4.248 27 H 0.061 0.939 28 H 0.074 0.926 29 H 0.081 0.919 30 H 0.049 0.951 31 H 0.055 0.945 32 H 0.073 0.927 33 H 0.152 0.848 34 H 0.139 0.861 35 H 0.115 0.885 36 H 0.206 0.794 37 H 0.100 0.900 38 H 0.088 0.912 39 H 0.098 0.902 40 H 0.072 0.928 41 H 0.113 0.887 42 H 0.072 0.928 43 H 0.114 0.886 44 H 0.097 0.903 45 H 0.092 0.908 46 H 0.130 0.870 47 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 6.551 -19.652 3.296 20.976 hybrid contribution -0.925 -0.315 -0.973 1.379 sum 5.626 -19.967 2.323 20.874 Atomic orbital electron populations 1.21503 0.81341 1.01163 1.00617 1.47174 1.04569 1.04784 1.74963 1.19358 0.92193 0.78613 0.97157 1.21592 1.36327 1.06399 0.92601 0.92169 1.24960 0.95403 0.96293 0.97434 1.69934 1.38376 1.14370 1.30711 0.86467 0.78078 0.78445 0.84650 1.19708 1.20961 1.20809 1.18094 0.91567 0.85973 0.90164 1.20871 0.92522 0.98966 1.09217 1.20979 0.99326 0.90851 0.94556 1.17889 0.92150 0.90455 1.13701 1.23899 0.90267 0.96688 1.00758 1.74243 1.09475 1.09296 1.12402 1.47924 1.03785 1.01791 1.86831 1.20471 0.78809 0.97981 0.94466 1.22775 0.96132 1.03540 0.98625 1.22613 0.93666 0.87917 0.97334 1.87928 1.77141 1.42367 1.22917 1.22528 0.92746 1.02507 0.83387 1.22529 0.97241 0.98727 1.01822 1.20684 0.92500 0.96863 0.96918 1.20458 0.99114 0.91151 1.14081 0.93891 0.92638 0.91932 0.95074 0.94458 0.92675 0.84811 0.86141 0.88485 0.79369 0.90032 0.91247 0.90206 0.92797 0.88677 0.92761 0.88553 0.90287 0.90798 0.86952 0.86524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.65 10.23 59.85 0.61 2.26 16 2 N -0.61 -12.75 2.99 -180.93 -0.54 -13.29 16 3 C 0.25 6.08 4.94 -5.19 -0.03 6.06 16 4 C -0.53 -14.35 9.39 -34.44 -0.32 -14.67 16 5 H 0.06 1.67 7.81 -52.48 -0.41 1.26 16 6 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 7 N -0.89 -25.50 13.29 55.43 0.74 -24.76 16 8 Si 0.90 21.27 29.54 -169.99 -5.02 16.24 16 9 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 10 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 11 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 12 C 0.25 4.97 6.56 -83.72 -0.55 4.42 16 13 C -0.19 -3.90 9.18 -39.45 -0.36 -4.26 16 14 C -0.04 -0.65 9.57 -39.19 -0.37 -1.02 16 15 C -0.14 -2.18 5.87 -105.03 -0.62 -2.80 16 16 C 0.09 1.31 10.75 -14.67 -0.16 1.16 16 17 N -0.25 -3.58 10.60 32.16 0.34 -3.24 16 18 N -0.67 -7.69 6.12 -4.74 -0.03 -7.72 16 19 C 0.19 1.88 3.22 -67.75 -0.22 1.66 16 20 C -0.17 -1.65 5.75 -26.59 -0.15 -1.81 16 21 C 0.06 0.53 6.84 37.20 0.25 0.79 16 22 O -0.38 -3.69 10.77 -35.23 -0.38 -4.07 16 23 C 0.07 0.48 6.84 37.20 0.25 0.74 16 24 C -0.16 -1.25 5.64 -26.59 -0.15 -1.40 16 25 C -0.05 -0.72 9.78 -39.19 -0.38 -1.10 16 26 C -0.22 -3.74 9.19 -39.44 -0.36 -4.10 16 27 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.06 0.78 6.18 -51.93 -0.32 0.46 16 29 H 0.06 1.01 7.89 -51.93 -0.41 0.60 16 30 H 0.03 0.80 7.89 -51.93 -0.41 0.39 16 31 H 0.04 0.97 6.19 -51.93 -0.32 0.65 16 32 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 33 H 0.13 2.97 6.13 -52.49 -0.32 2.65 16 34 H 0.12 2.09 7.55 -52.48 -0.40 1.70 16 35 H 0.10 1.10 8.02 -52.49 -0.42 0.68 16 36 H 0.37 3.66 8.61 -182.59 -1.57 2.09 16 37 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 38 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 39 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 40 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 43 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 44 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 45 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 46 H 0.11 1.32 8.06 -52.48 -0.42 0.89 16 47 H 0.12 1.71 6.12 -52.48 -0.32 1.38 16 LS Contribution 384.00 15.07 5.79 5.79 Total: -1.00 -29.96 384.00 -10.45 -40.41 By element: Atomic # 1 Polarization: 11.82 SS G_CDS: -8.69 Total: 3.13 kcal Atomic # 6 Polarization: -9.84 SS G_CDS: -2.65 Total: -12.49 kcal Atomic # 7 Polarization: -49.52 SS G_CDS: 0.51 Total: -49.01 kcal Atomic # 8 Polarization: -3.69 SS G_CDS: -0.38 Total: -4.07 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -29.96 -10.45 -40.41 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000757599064.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.141 kcal (2) G-P(sol) polarization free energy of solvation -29.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.411 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds