Wall clock time and date at job start Tue Mar 31 2020 11:44:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46506 * 120.00098 * 2 1 4 4 C 1.50699 * 109.46928 * 269.99904 * 3 2 1 5 5 H 1.08003 * 119.99963 * 0.02562 * 4 3 2 6 6 C 1.37873 * 119.99865 * 179.97438 * 4 3 2 7 7 N 1.31514 * 120.00518 * 0.02562 * 6 4 3 8 8 Si 1.86803 * 119.99987 * 179.97438 * 6 4 3 9 9 H 1.48501 * 109.46948 * 0.02562 * 8 6 4 10 10 H 1.48501 * 109.47174 * 120.00320 * 8 6 4 11 11 H 1.48497 * 109.47378 * 240.00235 * 8 6 4 12 12 C 1.39589 * 120.00361 * 179.97438 * 2 1 3 13 13 C 1.39049 * 119.92080 * 179.72683 * 12 2 1 14 14 C 1.37788 * 120.07724 * 179.76352 * 13 12 2 15 15 C 1.39724 * 119.92061 * 0.51177 * 14 13 12 16 16 C 1.47462 * 120.08254 * 179.71919 * 15 14 13 17 17 N 1.29756 * 119.99774 * 0.02562 * 16 15 14 18 18 N 1.40107 * 119.99700 * 180.02562 * 17 16 15 19 19 C 1.46493 * 119.99712 * 179.97438 * 18 17 16 20 20 C 1.53180 * 109.54292 * 269.55270 * 19 18 17 21 21 C 1.53092 * 109.16510 * 183.15685 * 20 19 18 22 22 O 1.42896 * 109.41841 * 57.60269 * 21 20 19 23 23 C 1.42899 * 114.09922 * 298.84711 * 22 21 20 24 24 C 1.53089 * 109.41662 * 61.15532 * 23 22 21 25 25 C 1.39728 * 119.83960 * 359.73979 * 15 14 13 26 26 C 1.37783 * 119.91714 * 0.02562 * 25 15 14 27 27 H 1.08999 * 109.46532 * 90.00087 * 1 2 3 28 28 H 1.09000 * 109.46877 * 210.00112 * 1 2 3 29 29 H 1.09000 * 109.47251 * 330.00217 * 1 2 3 30 30 H 1.09004 * 109.47073 * 29.99732 * 3 2 1 31 31 H 1.09000 * 109.47212 * 149.99814 * 3 2 1 32 32 H 0.96992 * 120.00316 * 179.97438 * 7 6 4 33 33 H 1.07995 * 119.96060 * 359.97438 * 13 12 2 34 34 H 1.08006 * 120.03527 * 180.24823 * 14 13 12 35 35 H 1.08002 * 120.00345 * 180.02562 * 16 15 14 36 36 H 0.97001 * 119.99817 * 359.97438 * 18 17 16 37 37 H 1.09002 * 109.54727 * 29.81376 * 19 18 17 38 38 H 1.09002 * 109.51753 * 303.05861 * 20 19 18 39 39 H 1.08995 * 109.52569 * 63.24829 * 20 19 18 40 40 H 1.09006 * 109.48039 * 297.62232 * 21 20 19 41 41 H 1.09002 * 109.48170 * 177.59207 * 21 20 19 42 42 H 1.09001 * 109.48168 * 301.16865 * 23 22 21 43 43 H 1.09005 * 109.48981 * 181.14673 * 23 22 21 44 44 H 1.09005 * 109.51880 * 182.48761 * 24 23 22 45 45 H 1.08999 * 109.51969 * 62.29953 * 24 23 22 46 46 H 1.08004 * 120.04600 * 179.97438 * 25 15 14 47 47 H 1.08003 * 119.96213 * 179.97438 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2688 0.0000 4 6 2.4487 1.7037 -1.4208 5 1 2.0974 1.0961 -2.2417 6 6 3.1260 2.8779 -1.6728 7 7 3.5534 3.6181 -0.6732 8 14 3.4380 3.4167 -3.4340 9 1 2.8609 2.4162 -4.3673 10 1 2.8000 4.7371 -3.6680 11 1 4.9006 3.5256 -3.6667 12 6 2.1630 -1.2088 0.0005 13 6 3.5535 -1.2068 -0.0052 14 6 4.2458 -2.3982 0.0002 15 6 3.5489 -3.6092 0.0007 16 6 4.2862 -4.8863 0.0003 17 7 5.5838 -4.8862 -0.0001 18 7 6.2843 -6.0996 -0.0010 19 6 7.7492 -6.0996 -0.0020 20 6 8.2607 -6.1102 -1.4458 21 6 9.7895 -6.1897 -1.4369 22 8 10.2003 -7.3584 -0.7246 23 6 9.7909 -7.3814 0.6443 24 6 8.2622 -7.3499 0.7190 25 6 2.1516 -3.6073 0.0012 26 6 1.4661 -2.4121 0.0006 27 1 -0.3632 0.0000 -1.0277 28 1 -0.3633 -0.8900 0.5139 29 1 -0.3634 0.8900 0.5138 30 1 1.6084 2.0285 0.5138 31 1 3.1500 1.1384 0.5139 32 1 4.0302 4.4439 -0.8505 33 1 4.0915 -0.2704 -0.0105 34 1 5.3259 -2.3958 -0.0002 35 1 3.7462 -5.8216 0.0002 36 1 5.7992 -6.9396 -0.0011 37 1 8.1142 -5.2085 0.5089 38 1 7.8540 -6.9752 -1.9699 39 1 7.9464 -5.1966 -1.9504 40 1 10.1967 -5.3044 -0.9483 41 1 10.1569 -6.2407 -2.4618 42 1 10.1981 -6.5118 1.1602 43 1 10.1594 -8.2910 1.1188 44 1 7.9490 -7.3228 1.7627 45 1 7.8557 -8.2399 0.2387 46 1 1.6096 -4.5415 0.0011 47 1 0.3861 -2.4098 0.0006 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000757599064.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:44:42 Heat of formation + Delta-G solvation = 7.511353 kcal Electronic energy + Delta-G solvation = -25295.217357 eV Core-core repulsion = 21670.916104 eV Total energy + Delta-G solvation = -3624.301252 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.42423 -40.30068 -38.03189 -36.96948 -35.07952 -34.56783 -32.09190 -31.92518 -31.66534 -29.79708 -29.17382 -26.83813 -25.31086 -24.57574 -24.30882 -23.20536 -22.26310 -21.45476 -20.69177 -18.64932 -18.24067 -17.75999 -17.56340 -16.97448 -16.78475 -16.31197 -15.91423 -15.76089 -15.62232 -15.30842 -15.15246 -14.91101 -14.47402 -14.33863 -14.17365 -14.04918 -13.85265 -13.37477 -13.17842 -13.02399 -13.00514 -12.70522 -12.55162 -12.53195 -12.39005 -12.33116 -12.14782 -11.86518 -11.67363 -11.48718 -11.35965 -10.86564 -10.66388 -10.63707 -10.54745 -9.68898 -8.99176 -8.30092 -7.64030 -6.36928 0.36260 0.74873 1.35735 1.37693 1.49637 1.86421 1.98887 2.34608 2.62860 2.93403 3.06440 3.26255 3.69320 3.83747 3.99138 4.01526 4.06378 4.14311 4.24511 4.25735 4.35585 4.43054 4.50367 4.60715 4.69052 4.72216 4.73460 4.77048 4.84037 4.86533 4.88555 5.00086 5.02471 5.05461 5.09603 5.17606 5.19097 5.33751 5.41254 5.59644 5.70104 5.74764 5.93130 6.07392 6.15722 6.21265 6.32872 6.49106 6.82822 6.92353 7.34725 7.64047 8.83508 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.013415 B = 0.002476 C = 0.002177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2086.723945 B =11304.599806 C =12856.569344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.097 3.903 2 N -0.627 5.627 3 C 0.263 3.737 4 C -0.539 4.539 5 H 0.049 0.951 6 C 0.012 3.988 7 N -0.927 5.927 8 Si 0.960 3.040 9 H -0.270 1.270 10 H -0.273 1.273 11 H -0.279 1.279 12 C 0.222 3.778 13 C -0.220 4.220 14 C -0.046 4.046 15 C -0.128 4.128 16 C 0.088 3.912 17 N -0.271 5.271 18 N -0.660 5.660 19 C 0.183 3.817 20 C -0.165 4.165 21 C 0.063 3.937 22 O -0.399 6.399 23 C 0.061 3.939 24 C -0.153 4.153 25 C -0.037 4.037 26 C -0.215 4.215 27 H 0.042 0.958 28 H 0.089 0.911 29 H 0.061 0.939 30 H 0.013 0.987 31 H 0.011 0.989 32 H 0.267 0.733 33 H 0.095 0.905 34 H 0.115 0.885 35 H 0.133 0.867 36 H 0.381 0.619 37 H 0.067 0.933 38 H 0.068 0.932 39 H 0.061 0.939 40 H 0.057 0.943 41 H 0.105 0.895 42 H 0.059 0.941 43 H 0.116 0.884 44 H 0.087 0.913 45 H 0.079 0.921 46 H 0.160 0.840 47 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.787 -23.708 2.873 24.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.334 5.334 3 C 0.142 3.858 4 C -0.578 4.578 5 H 0.067 0.933 6 C -0.188 4.188 7 N -0.567 5.567 8 Si 0.785 3.215 9 H -0.195 1.195 10 H -0.199 1.199 11 H -0.204 1.204 12 C 0.116 3.884 13 C -0.243 4.243 14 C -0.067 4.067 15 C -0.133 4.133 16 C -0.123 4.123 17 N -0.078 5.078 18 N -0.397 5.397 19 C 0.078 3.922 20 C -0.204 4.204 21 C -0.014 4.014 22 O -0.318 6.318 23 C -0.016 4.016 24 C -0.192 4.192 25 C -0.058 4.058 26 C -0.238 4.238 27 H 0.060 0.940 28 H 0.108 0.892 29 H 0.080 0.920 30 H 0.031 0.969 31 H 0.029 0.971 32 H 0.076 0.924 33 H 0.113 0.887 34 H 0.133 0.867 35 H 0.150 0.850 36 H 0.219 0.781 37 H 0.085 0.915 38 H 0.087 0.913 39 H 0.080 0.920 40 H 0.075 0.925 41 H 0.123 0.877 42 H 0.077 0.923 43 H 0.134 0.866 44 H 0.106 0.894 45 H 0.098 0.902 46 H 0.177 0.823 47 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 5.886 -22.923 2.848 23.838 hybrid contribution -0.605 0.514 -0.783 1.115 sum 5.281 -22.409 2.064 23.115 Atomic orbital electron populations 1.21658 0.79036 1.02865 1.01041 1.47014 1.05883 1.03738 1.76721 1.18837 0.91224 0.80309 0.95463 1.21795 1.36206 1.06383 0.93378 0.93266 1.25772 0.95160 0.96406 1.01419 1.70035 1.39094 1.14842 1.32713 0.85469 0.77979 0.78225 0.79787 1.19487 1.19884 1.20427 1.18358 0.91422 0.86763 0.91896 1.20692 0.93348 0.98302 1.11935 1.20976 0.99200 0.91250 0.95288 1.18191 0.93104 0.90471 1.11503 1.23898 0.90267 0.96804 1.01336 1.74159 1.10415 1.11490 1.11693 1.47955 1.04249 1.01336 1.86170 1.20618 0.78063 0.98736 0.94819 1.22684 0.97032 1.02510 0.98203 1.22630 0.92764 0.87981 0.98017 1.87913 1.77343 1.42589 1.23997 1.22713 0.92480 1.03795 0.82569 1.22449 0.97384 0.97416 1.01953 1.21142 0.92003 0.98068 0.94537 1.20774 1.00432 0.90187 1.12419 0.93988 0.89225 0.91974 0.96932 0.97108 0.92408 0.88665 0.86731 0.85003 0.78090 0.91499 0.91294 0.92006 0.92498 0.87739 0.92319 0.86564 0.89423 0.90205 0.82252 0.83869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 3.21 10.23 127.77 1.31 4.52 16 2 N -0.63 -26.96 2.99 -726.34 -2.17 -29.13 16 3 C 0.26 13.81 4.94 85.63 0.42 14.23 16 4 C -0.54 -30.42 9.39 25.60 0.24 -30.18 16 5 H 0.05 2.82 7.81 -2.91 -0.02 2.80 16 6 C 0.01 0.65 5.46 84.65 0.46 1.11 16 7 N -0.93 -54.77 13.29 21.45 0.28 -54.48 16 8 Si 0.96 44.54 29.54 68.60 2.03 46.57 16 9 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 10 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 11 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 12 C 0.22 8.92 6.56 38.30 0.25 9.17 16 13 C -0.22 -9.41 9.18 22.36 0.21 -9.21 16 14 C -0.05 -1.70 9.57 22.52 0.22 -1.48 16 15 C -0.13 -3.84 5.87 -20.13 -0.12 -3.96 16 16 C 0.09 2.19 10.75 87.43 0.94 3.13 16 17 N -0.27 -7.41 10.60 -52.18 -0.55 -7.96 16 18 N -0.66 -13.92 6.12 -168.90 -1.03 -14.95 16 19 C 0.18 3.42 3.22 45.11 0.15 3.57 16 20 C -0.16 -3.04 5.75 30.69 0.18 -2.87 16 21 C 0.06 1.02 6.84 72.01 0.49 1.51 16 22 O -0.40 -6.98 10.77 -148.98 -1.60 -8.58 16 23 C 0.06 0.77 6.84 72.01 0.49 1.27 16 24 C -0.15 -2.00 5.64 30.68 0.17 -1.82 16 25 C -0.04 -0.96 9.78 22.52 0.22 -0.74 16 26 C -0.22 -6.64 9.19 22.36 0.21 -6.44 16 27 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 28 H 0.09 2.31 6.18 -2.39 -0.01 2.29 16 29 H 0.06 2.02 7.89 -2.39 -0.02 2.00 16 30 H 0.01 0.70 7.89 -2.38 -0.02 0.68 16 31 H 0.01 0.62 6.19 -2.39 -0.01 0.61 16 32 H 0.27 14.81 8.31 -92.71 -0.77 14.03 16 33 H 0.10 4.71 6.13 -2.91 -0.02 4.70 16 34 H 0.11 4.21 7.55 -2.91 -0.02 4.19 16 35 H 0.13 2.37 8.02 -2.91 -0.02 2.35 16 36 H 0.38 6.46 8.61 -213.31 -1.84 4.62 16 37 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 38 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 39 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 40 H 0.06 0.87 8.14 -2.38 -0.02 0.85 16 41 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 42 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 43 H 0.12 1.01 8.14 -2.38 -0.02 0.99 16 44 H 0.09 1.02 8.14 -2.38 -0.02 1.00 16 45 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 46 H 0.16 2.75 8.06 -2.91 -0.02 2.72 16 47 H 0.14 3.61 6.12 -2.91 -0.02 3.60 16 Total: -1.00 -67.80 384.00 1.91 -65.89 By element: Atomic # 1 Polarization: 21.69 SS G_CDS: -0.88 Total: 20.82 kcal Atomic # 6 Polarization: -24.00 SS G_CDS: 5.83 Total: -18.17 kcal Atomic # 7 Polarization: -103.05 SS G_CDS: -3.47 Total: -106.52 kcal Atomic # 8 Polarization: -6.98 SS G_CDS: -1.60 Total: -8.58 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 2.03 Total: 46.57 kcal Total: -67.80 1.91 -65.89 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000757599064.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.405 kcal (2) G-P(sol) polarization free energy of solvation -67.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.894 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds