Wall clock time and date at job start Tue Mar 31 2020 11:44:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46502 * 119.99571 * 2 1 4 4 C 1.50702 * 109.46729 * 269.99489 * 3 2 1 5 5 H 1.07994 * 120.00283 * 0.02562 * 4 3 2 6 6 C 1.37878 * 119.99673 * 180.02562 * 4 3 2 7 7 N 1.31515 * 120.00135 * 180.02562 * 6 4 3 8 8 Si 1.86796 * 120.00170 * 359.97438 * 6 4 3 9 9 H 1.48500 * 109.47185 * 90.00606 * 8 6 4 10 10 H 1.48506 * 109.47322 * 210.00476 * 8 6 4 11 11 H 1.48503 * 109.47362 * 330.00301 * 8 6 4 12 12 C 1.39669 * 119.99748 * 179.97438 * 2 1 3 13 13 C 1.38905 * 120.07711 * 0.02562 * 12 2 1 14 14 C 1.38102 * 119.92398 * 179.72013 * 13 12 2 15 15 C 1.38284 * 120.07730 * 0.28542 * 14 13 12 16 16 C 1.50702 * 119.92910 * 179.97438 * 15 14 13 17 17 N 1.46900 * 109.47147 * 89.99455 * 16 15 14 18 18 C 1.45754 * 110.99566 * 191.87095 * 17 16 15 19 19 C 1.51687 * 113.93545 * 167.26664 * 18 17 16 20 20 C 1.53118 * 110.75465 * 66.77014 * 19 18 17 21 21 N 1.47254 * 108.39965 * 274.41311 * 20 19 18 22 22 C 1.33608 * 119.84771 * 69.99212 * 21 20 19 23 23 O 1.21286 * 119.88167 * 180.53850 * 22 21 20 24 24 C 1.46872 * 110.99981 * 66.05073 * 17 16 15 25 25 C 1.38288 * 120.14784 * 0.02562 * 15 14 13 26 26 C 1.38104 * 120.07459 * 0.02562 * 25 15 14 27 27 H 1.08997 * 109.47417 * 270.00230 * 1 2 3 28 28 H 1.09009 * 109.47082 * 30.00401 * 1 2 3 29 29 H 1.09003 * 109.47201 * 150.00150 * 1 2 3 30 30 H 1.08994 * 109.47775 * 29.99713 * 3 2 1 31 31 H 1.09002 * 109.46961 * 150.00104 * 3 2 1 32 32 H 0.96997 * 120.00499 * 179.97438 * 7 6 4 33 33 H 1.08002 * 120.04044 * 0.02562 * 13 12 2 34 34 H 1.08008 * 119.96515 * 180.25651 * 14 13 12 35 35 H 1.08998 * 109.46900 * 209.99776 * 16 15 14 36 36 H 1.09005 * 109.46585 * 329.99345 * 16 15 14 37 37 H 1.09004 * 108.59425 * 288.41843 * 18 17 16 38 38 H 1.08999 * 108.59634 * 46.11425 * 18 17 16 39 39 H 1.08994 * 109.22358 * 306.44395 * 19 18 17 40 40 H 1.09001 * 109.22219 * 187.09609 * 19 18 17 41 41 H 1.08997 * 109.67902 * 154.68794 * 20 19 18 42 42 H 1.09001 * 109.67646 * 34.13565 * 20 19 18 43 43 H 0.96994 * 120.07345 * 249.97171 * 21 20 19 44 44 H 1.09004 * 109.60239 * 330.55958 * 24 17 16 45 45 H 1.08999 * 109.60452 * 91.03384 * 24 17 16 46 46 H 1.08007 * 119.96217 * 179.97438 * 25 15 14 47 47 H 1.07998 * 120.03659 * 179.97438 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4486 1.7037 -1.4209 5 1 2.0975 1.0961 -2.2417 6 6 3.1268 2.8774 -1.6728 7 7 3.3456 3.2573 -2.9128 8 14 3.7336 3.9288 -0.2531 9 1 5.1067 3.5072 0.1236 10 1 3.7494 5.3555 -0.6650 11 1 2.8270 3.7598 0.9109 12 6 2.1633 -1.2096 0.0005 13 6 1.4704 -2.4135 0.0005 14 6 2.1640 -3.6076 -0.0048 15 6 3.5468 -3.6059 -0.0041 16 6 4.3004 -4.9109 -0.0093 17 7 4.5458 -5.3292 -1.3960 18 6 5.0182 -6.7069 -1.4501 19 6 5.0028 -7.3086 -2.8425 20 6 6.0223 -6.6103 -3.7466 21 7 5.3876 -5.4146 -4.3261 22 6 5.1101 -4.3654 -3.5470 23 8 4.5784 -3.3840 -4.0217 24 6 5.4566 -4.3972 -2.0735 25 6 4.2398 -2.4092 0.0024 26 6 3.5524 -1.2114 0.0088 27 1 -0.3634 0.0000 1.0276 28 1 -0.3634 0.8900 -0.5139 29 1 -0.3634 -0.8900 -0.5138 30 1 1.6084 2.0285 0.5137 31 1 3.1499 1.1385 0.5138 32 1 3.8224 4.0832 -3.0901 33 1 0.3903 -2.4156 -0.0003 34 1 1.6258 -4.5441 -0.0090 35 1 5.2525 -4.7827 0.5054 36 1 3.7110 -5.6727 0.5011 37 1 6.0388 -6.7397 -1.0687 38 1 4.3886 -7.3160 -0.8015 39 1 4.0070 -7.1961 -3.2710 40 1 5.2473 -8.3689 -2.7780 41 1 6.3289 -7.2864 -4.5447 42 1 6.8924 -6.3159 -3.1597 43 1 5.1717 -5.3888 -5.2714 44 1 5.3414 -3.3998 -1.6491 45 1 6.4854 -4.7343 -1.9470 46 1 5.3199 -2.4113 0.0033 47 1 4.0943 -0.2772 0.0143 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000769113177.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:44:08 Heat of formation + Delta-G solvation = -11.223961 kcal Electronic energy + Delta-G solvation = -26976.009789 eV Core-core repulsion = 23350.896112 eV Total energy + Delta-G solvation = -3625.113676 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.28969 -40.38214 -38.57587 -37.34857 -36.00054 -34.71356 -32.72049 -32.00063 -31.42873 -30.08047 -28.91079 -27.33905 -26.26825 -24.89866 -23.43135 -22.94299 -21.81369 -21.03532 -20.79255 -19.10219 -18.30533 -18.14966 -17.92630 -16.89734 -16.59249 -16.35418 -16.24193 -15.84364 -15.28375 -15.19507 -14.98335 -14.84243 -14.72050 -14.40001 -14.32997 -14.17250 -14.09643 -13.39525 -13.30044 -13.22336 -13.11802 -12.87198 -12.66012 -12.57876 -12.41475 -12.06492 -12.02996 -11.95482 -11.77981 -11.66566 -11.45454 -11.00117 -10.84213 -10.40717 -10.07394 -9.65339 -9.21619 -8.34488 -7.91860 -6.40966 0.69390 0.81179 1.31272 1.33891 1.44656 1.59792 2.29178 2.42628 2.53240 2.90419 2.98742 3.32114 3.68549 3.89588 4.01816 4.03971 4.08318 4.16389 4.22486 4.36625 4.43556 4.51256 4.55377 4.59073 4.63644 4.68817 4.72949 4.79529 4.81220 4.82690 4.87790 4.99519 5.04402 5.06950 5.08594 5.27885 5.40154 5.43926 5.59029 5.63667 5.83942 5.93910 6.01032 6.08437 6.19087 6.24770 6.35030 6.58732 6.68716 6.86149 7.24448 7.30970 8.83800 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.015257 B = 0.003601 C = 0.003203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1834.824507 B = 7773.473555 C = 8738.982342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.098 3.902 2 N -0.630 5.630 3 C 0.234 3.766 4 C -0.540 4.540 5 H 0.016 0.984 6 C 0.008 3.992 7 N -0.948 5.948 8 Si 0.953 3.047 9 H -0.264 1.264 10 H -0.278 1.278 11 H -0.240 1.240 12 C 0.210 3.790 13 C -0.221 4.221 14 C -0.050 4.050 15 C -0.158 4.158 16 C 0.121 3.879 17 N -0.549 5.549 18 C 0.051 3.949 19 C -0.137 4.137 20 C 0.101 3.899 21 N -0.718 5.718 22 C 0.518 3.482 23 O -0.609 6.609 24 C 0.039 3.961 25 C -0.069 4.069 26 C -0.219 4.219 27 H 0.066 0.934 28 H 0.054 0.946 29 H 0.070 0.930 30 H 0.038 0.962 31 H 0.030 0.970 32 H 0.268 0.732 33 H 0.130 0.870 34 H 0.143 0.857 35 H 0.056 0.944 36 H 0.107 0.893 37 H 0.052 0.948 38 H 0.093 0.907 39 H 0.057 0.943 40 H 0.116 0.884 41 H 0.118 0.882 42 H 0.083 0.917 43 H 0.401 0.599 44 H 0.085 0.915 45 H 0.090 0.910 46 H 0.125 0.875 47 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.789 -26.686 7.706 28.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.338 5.338 3 C 0.111 3.889 4 C -0.579 4.579 5 H 0.034 0.966 6 C -0.189 4.189 7 N -0.588 5.588 8 Si 0.774 3.226 9 H -0.189 1.189 10 H -0.203 1.203 11 H -0.163 1.163 12 C 0.106 3.894 13 C -0.243 4.243 14 C -0.069 4.069 15 C -0.161 4.161 16 C -0.004 4.004 17 N -0.276 5.276 18 C -0.076 4.076 19 C -0.175 4.175 20 C -0.021 4.021 21 N -0.369 5.369 22 C 0.305 3.695 23 O -0.489 6.489 24 C -0.091 4.091 25 C -0.089 4.089 26 C -0.241 4.241 27 H 0.084 0.916 28 H 0.073 0.927 29 H 0.088 0.912 30 H 0.056 0.944 31 H 0.048 0.952 32 H 0.077 0.923 33 H 0.148 0.852 34 H 0.161 0.839 35 H 0.074 0.926 36 H 0.125 0.875 37 H 0.070 0.930 38 H 0.111 0.889 39 H 0.076 0.924 40 H 0.134 0.866 41 H 0.136 0.864 42 H 0.101 0.899 43 H 0.236 0.764 44 H 0.104 0.896 45 H 0.108 0.892 46 H 0.143 0.857 47 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 5.094 -25.888 7.335 27.385 hybrid contribution 0.771 1.456 -0.502 1.722 sum 5.865 -24.432 6.833 26.039 Atomic orbital electron populations 1.21625 0.79195 1.02295 1.01393 1.46699 1.05642 1.03349 1.78130 1.19316 0.92625 0.82445 0.94489 1.21691 1.36718 1.06755 0.92701 0.96552 1.25973 0.95372 0.98816 0.98779 1.70099 1.42663 1.24391 1.21688 0.85649 0.79857 0.77635 0.79414 1.18939 1.20304 1.16328 1.18219 0.91731 0.86548 0.92891 1.20837 1.00066 0.91016 1.12405 1.20902 0.93661 0.97064 0.95298 1.19604 0.93980 0.94413 1.08117 1.20872 0.98842 0.93603 0.87120 1.60711 1.47453 1.02483 1.16913 1.21832 1.00125 0.87072 0.98531 1.21902 0.99798 1.01301 0.94513 1.22168 0.95375 0.85426 0.99172 1.46108 1.61976 1.16518 1.12307 1.21068 0.76431 0.81794 0.90242 1.90808 1.45082 1.35974 1.77042 1.22405 0.96817 0.99932 0.89981 1.20870 0.99277 0.91558 0.97152 1.20781 0.93180 0.98771 1.11407 0.91615 0.92715 0.91165 0.94389 0.95245 0.92302 0.85176 0.83947 0.92557 0.87487 0.93032 0.88900 0.92373 0.86615 0.86394 0.89883 0.76353 0.89624 0.89185 0.85681 0.88386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 3.56 10.19 127.77 1.30 4.86 16 2 N -0.63 -28.55 2.99 -726.55 -2.17 -30.72 16 3 C 0.23 11.82 3.99 85.63 0.34 12.16 16 4 C -0.54 -33.37 9.94 25.60 0.25 -33.12 16 5 H 0.02 1.16 8.06 -2.91 -0.02 1.14 16 6 C 0.01 0.50 5.47 84.65 0.46 0.96 16 7 N -0.95 -62.62 13.96 21.45 0.30 -62.32 16 8 Si 0.95 45.01 27.47 68.60 1.88 46.89 16 9 H -0.26 -12.03 7.11 99.48 0.71 -11.32 16 10 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 11 H -0.24 -10.28 6.54 99.48 0.65 -9.63 16 12 C 0.21 9.10 6.55 38.21 0.25 9.35 16 13 C -0.22 -7.91 9.21 22.40 0.21 -7.70 16 14 C -0.05 -1.53 9.69 22.25 0.22 -1.31 16 15 C -0.16 -4.67 5.01 -19.84 -0.10 -4.76 16 16 C 0.12 2.40 5.11 85.56 0.44 2.83 16 17 N -0.55 -11.30 4.35 -909.78 -3.96 -15.26 16 18 C 0.05 0.58 4.93 86.09 0.42 1.01 16 19 C -0.14 -1.26 5.86 30.20 0.18 -1.08 16 20 C 0.10 0.98 6.50 86.28 0.56 1.54 16 21 N -0.72 -14.72 5.33 -461.97 -2.46 -17.18 16 22 C 0.52 16.27 7.46 88.06 0.66 16.92 16 23 O -0.61 -28.04 17.92 -3.05 -0.05 -28.09 16 24 C 0.04 0.99 5.09 85.78 0.44 1.43 16 25 C -0.07 -2.44 7.94 22.25 0.18 -2.26 16 26 C -0.22 -9.54 9.21 22.40 0.21 -9.34 16 27 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 28 H 0.05 2.10 8.07 -2.38 -0.02 2.08 16 29 H 0.07 2.32 6.20 -2.39 -0.01 2.31 16 30 H 0.04 1.82 7.13 -2.39 -0.02 1.81 16 31 H 0.03 1.47 5.61 -2.39 -0.01 1.46 16 32 H 0.27 16.35 8.31 -92.71 -0.77 15.58 16 33 H 0.13 4.11 6.14 -2.91 -0.02 4.10 16 34 H 0.14 3.36 8.06 -2.91 -0.02 3.33 16 35 H 0.06 0.94 8.06 -2.39 -0.02 0.92 16 36 H 0.11 1.57 7.74 -2.38 -0.02 1.55 16 37 H 0.05 0.42 7.78 -2.38 -0.02 0.40 16 38 H 0.09 0.81 7.76 -2.39 -0.02 0.79 16 39 H 0.06 0.85 8.05 -2.39 -0.02 0.83 16 40 H 0.12 0.32 8.14 -2.39 -0.02 0.30 16 41 H 0.12 0.44 8.14 -2.39 -0.02 0.42 16 42 H 0.08 0.67 6.76 -2.39 -0.02 0.65 16 43 H 0.40 7.84 8.92 -92.71 -0.83 7.02 16 44 H 0.09 2.72 4.62 -2.39 -0.01 2.71 16 45 H 0.09 1.61 6.66 -2.39 -0.02 1.59 16 46 H 0.13 3.81 7.35 -2.91 -0.02 3.79 16 47 H 0.10 4.72 6.13 -2.91 -0.02 4.70 16 Total: -1.00 -88.38 366.76 -0.35 -88.73 By element: Atomic # 1 Polarization: 26.34 SS G_CDS: 0.10 Total: 26.45 kcal Atomic # 6 Polarization: -14.51 SS G_CDS: 6.01 Total: -8.50 kcal Atomic # 7 Polarization: -117.18 SS G_CDS: -8.30 Total: -125.48 kcal Atomic # 8 Polarization: -28.04 SS G_CDS: -0.05 Total: -28.09 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 1.88 Total: 46.89 kcal Total: -88.38 -0.35 -88.73 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000769113177.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.508 kcal (2) G-P(sol) polarization free energy of solvation -88.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.732 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds