Wall clock time and date at job start Tue Mar 31 2020 11:44:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46491 * 120.00453 * 2 1 4 4 C 1.50702 * 109.46957 * 90.00133 * 3 2 1 5 5 H 1.08002 * 120.00299 * 0.02562 * 4 3 2 6 6 C 1.37884 * 119.99942 * 179.72213 * 4 3 2 7 7 N 1.31514 * 119.99698 * 0.28408 * 6 4 3 8 8 Si 1.86794 * 119.99837 * 180.27476 * 6 4 3 9 9 H 1.48496 * 109.47341 * 0.02562 * 8 6 4 10 10 H 1.48508 * 109.46983 * 120.00379 * 8 6 4 11 11 H 1.48503 * 109.47491 * 240.00192 * 8 6 4 12 12 C 1.39676 * 119.99572 * 180.02562 * 2 1 3 13 13 C 1.38917 * 120.07633 * 179.72150 * 12 2 1 14 14 C 1.38101 * 119.92695 * 179.76656 * 13 12 2 15 15 C 1.38286 * 120.07317 * 0.50927 * 14 13 12 16 16 C 1.50701 * 119.92333 * 179.72795 * 15 14 13 17 17 N 1.46900 * 109.46525 * 270.01637 * 16 15 14 18 18 C 1.46900 * 111.00227 * 66.04990 * 17 16 15 19 19 C 1.46901 * 111.00069 * 189.99991 * 17 16 15 20 20 H 1.09001 * 110.43306 * 300.70570 * 19 17 16 21 21 C 1.54630 * 110.48969 * 178.16117 * 19 17 16 22 22 C 1.54481 * 101.76654 * 216.52681 * 21 19 17 23 23 N 1.46767 * 105.47255 * 25.41288 * 22 21 19 24 24 C 1.34654 * 111.33593 * 342.87130 * 23 22 21 25 25 O 1.21284 * 125.06809 * 180.51851 * 24 23 22 26 26 C 1.38283 * 120.15184 * 359.73722 * 15 14 13 27 27 C 1.38103 * 120.07475 * 0.02562 * 26 15 14 28 28 H 1.09000 * 109.47583 * 89.99529 * 1 2 3 29 29 H 1.09005 * 109.47610 * 210.00002 * 1 2 3 30 30 H 1.09006 * 109.46979 * 329.99538 * 1 2 3 31 31 H 1.09004 * 109.47166 * 330.00399 * 3 2 1 32 32 H 1.08994 * 109.47507 * 210.00106 * 3 2 1 33 33 H 0.97005 * 119.99651 * 179.97438 * 7 6 4 34 34 H 1.08002 * 120.03205 * 359.97438 * 13 12 2 35 35 H 1.07999 * 119.96139 * 180.25385 * 14 13 12 36 36 H 1.08993 * 109.47554 * 30.01482 * 16 15 14 37 37 H 1.09003 * 109.47368 * 150.02195 * 16 15 14 38 38 H 1.08999 * 109.47128 * 59.99641 * 18 17 16 39 39 H 1.08997 * 109.47693 * 179.97438 * 18 17 16 40 40 H 1.09005 * 109.46834 * 300.00056 * 18 17 16 41 41 H 1.08999 * 110.96600 * 334.64310 * 21 19 17 42 42 H 1.08998 * 110.96886 * 98.36369 * 21 19 17 43 43 H 1.08994 * 110.24744 * 144.41853 * 22 21 19 44 44 H 1.09005 * 110.24140 * 266.41697 * 22 21 19 45 45 H 0.97001 * 124.34951 * 162.98373 * 23 22 21 46 46 H 1.08004 * 119.96569 * 179.97438 * 26 15 14 47 47 H 1.07995 * 120.04209 * 179.97438 * 27 26 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 2.4487 1.7036 1.4208 5 1 2.0982 1.0956 2.2418 6 6 3.1316 2.8746 1.6728 7 7 3.5589 3.6147 0.6732 8 14 3.4497 3.4098 3.4340 9 1 2.8715 2.4100 4.3673 10 1 4.9134 3.5122 3.6635 11 1 2.8177 4.7325 3.6712 12 6 2.1632 -1.2097 -0.0005 13 6 3.5524 -1.2116 -0.0064 14 6 4.2397 -2.4095 -0.0020 15 6 3.5466 -3.6061 -0.0025 16 6 4.3001 -4.9112 -0.0039 17 7 4.5443 -5.3340 -1.3894 18 6 5.4548 -4.4041 -2.0709 19 6 5.0624 -6.7077 -1.4371 20 1 5.9953 -6.7822 -0.8783 21 6 5.2717 -7.1567 -2.9020 22 6 4.8682 -8.6464 -2.8355 23 7 3.9457 -8.7519 -1.6989 24 6 4.0391 -7.6788 -0.8909 25 8 3.3970 -7.5132 0.1246 26 6 2.1638 -3.6079 -0.0018 27 6 1.4702 -2.4136 -0.0012 28 1 -0.3634 0.0001 -1.0276 29 1 -0.3634 -0.8900 0.5138 30 1 -0.3633 0.8900 0.5139 31 1 1.6084 2.0283 -0.5138 32 1 3.1499 1.1383 -0.5138 33 1 4.0390 4.4388 0.8505 34 1 4.0942 -0.2774 -0.0109 35 1 5.3197 -2.4116 -0.0024 36 1 5.2527 -4.7815 0.5096 37 1 3.7111 -5.6714 0.5094 38 1 6.4071 -4.3746 -1.5414 39 1 5.6189 -4.7408 -3.0945 40 1 5.0143 -3.4071 -2.0821 41 1 4.6169 -6.6050 -3.5763 42 1 6.3149 -7.0473 -3.1982 43 1 4.3671 -8.9429 -3.7569 44 1 5.7475 -9.2681 -2.6666 45 1 3.3465 -9.4996 -1.5479 46 1 1.6255 -4.5442 -0.0026 47 1 0.3903 -2.4156 -0.0012 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000770378185.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:44:21 Heat of formation + Delta-G solvation = 14.854431 kcal Electronic energy + Delta-G solvation = -26423.458982 eV Core-core repulsion = 22799.476149 eV Total energy + Delta-G solvation = -3623.982832 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.75484 -38.96006 -37.03398 -36.54253 -35.15251 -32.69110 -31.03783 -30.38331 -29.52171 -27.90029 -27.68532 -26.70423 -24.75860 -23.41208 -21.95654 -21.75027 -21.38378 -20.13893 -19.44494 -17.63787 -17.11476 -16.56801 -16.38823 -15.68861 -15.19977 -14.97179 -14.59960 -14.56957 -14.17843 -14.00043 -13.85925 -13.64969 -13.34700 -13.03443 -12.83980 -12.82463 -12.73586 -12.23786 -12.13985 -11.69716 -11.69456 -11.58018 -11.40310 -11.33356 -11.20948 -10.88740 -10.65279 -10.58101 -10.22762 -9.85157 -9.81603 -9.60961 -9.39511 -8.75469 -8.48684 -8.34913 -8.15012 -6.40193 -5.97681 -4.14774 2.19038 2.26072 2.41628 3.02715 3.26842 3.34880 3.40635 3.92619 4.03276 4.18593 4.21677 4.44286 4.61366 4.69818 4.80449 5.00998 5.10532 5.23752 5.26656 5.36897 5.41889 5.51136 5.58195 5.64008 5.74206 5.76238 5.91030 6.01868 6.08907 6.13625 6.15148 6.35516 6.44232 6.49853 6.52410 6.72532 6.76410 6.97650 6.99805 7.05274 7.16658 7.28245 7.35096 7.45608 7.69796 7.84076 8.02781 8.19101 8.32893 8.55839 8.95176 9.52007 10.97794 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.022983 B = 0.002652 C = 0.002579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1217.980535 B =10556.813720 C =10854.108341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.099 3.901 2 N -0.617 5.617 3 C 0.249 3.751 4 C -0.529 4.529 5 H 0.060 0.940 6 C 0.060 3.940 7 N -0.896 5.896 8 Si 0.895 3.105 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.284 1.284 12 C 0.241 3.759 13 C -0.189 4.189 14 C -0.068 4.068 15 C -0.162 4.162 16 C 0.086 3.914 17 N -0.517 5.517 18 C 0.020 3.980 19 C 0.046 3.954 20 H 0.076 0.924 21 C -0.128 4.128 22 C 0.104 3.896 23 N -0.734 5.734 24 C 0.531 3.469 25 O -0.517 6.517 26 C -0.049 4.049 27 C -0.223 4.223 28 H 0.035 0.965 29 H 0.055 0.945 30 H 0.066 0.934 31 H 0.029 0.971 32 H 0.036 0.964 33 H 0.263 0.737 34 H 0.130 0.870 35 H 0.106 0.894 36 H 0.031 0.969 37 H 0.110 0.890 38 H 0.024 0.976 39 H 0.065 0.935 40 H 0.084 0.916 41 H 0.096 0.904 42 H 0.089 0.911 43 H 0.081 0.919 44 H 0.071 0.929 45 H 0.410 0.590 46 H 0.109 0.891 47 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.874 -23.024 -9.361 25.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.323 5.323 3 C 0.129 3.871 4 C -0.568 4.568 5 H 0.078 0.922 6 C -0.141 4.141 7 N -0.535 5.535 8 Si 0.723 3.277 9 H -0.197 1.197 10 H -0.209 1.209 11 H -0.210 1.210 12 C 0.134 3.866 13 C -0.212 4.212 14 C -0.088 4.088 15 C -0.165 4.165 16 C -0.040 4.040 17 N -0.242 5.242 18 C -0.128 4.128 19 C -0.066 4.066 20 H 0.094 0.906 21 C -0.166 4.166 22 C -0.021 4.021 23 N -0.391 5.391 24 C 0.317 3.683 25 O -0.391 6.391 26 C -0.068 4.068 27 C -0.246 4.246 28 H 0.053 0.947 29 H 0.073 0.927 30 H 0.085 0.915 31 H 0.047 0.953 32 H 0.053 0.947 33 H 0.072 0.928 34 H 0.148 0.852 35 H 0.124 0.876 36 H 0.049 0.951 37 H 0.128 0.872 38 H 0.043 0.957 39 H 0.084 0.916 40 H 0.102 0.898 41 H 0.114 0.886 42 H 0.107 0.893 43 H 0.099 0.901 44 H 0.089 0.911 45 H 0.249 0.751 46 H 0.127 0.873 47 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 3.145 -22.426 -9.124 24.414 hybrid contribution 0.807 0.162 1.385 1.611 sum 3.952 -22.263 -7.739 23.899 Atomic orbital electron populations 1.21460 0.81568 1.01875 0.99620 1.47067 1.04331 1.04593 1.76299 1.19270 0.92067 0.78820 0.96920 1.21640 1.35946 1.06437 0.92743 0.92215 1.24967 0.95477 0.96327 0.97377 1.69945 1.38427 1.14470 1.30659 0.86475 0.78020 0.78436 0.84754 1.19710 1.20880 1.20965 1.17940 0.91470 0.85937 0.91254 1.20824 0.92691 0.98567 1.09074 1.20669 0.98317 0.91734 0.98072 1.19101 0.93574 0.93074 1.10726 1.21346 0.98752 0.96517 0.87346 1.62106 1.45234 0.98973 1.17895 1.22517 0.94009 0.98072 0.98163 1.22300 0.96290 0.90830 0.97181 0.90623 1.22758 1.03322 0.94579 0.95937 1.22048 0.93274 0.97264 0.89531 1.46169 1.42878 1.23052 1.26997 1.20701 0.82453 0.82468 0.82704 1.90675 1.47623 1.76287 1.24553 1.20515 0.93307 0.96497 0.96524 1.20569 0.98976 0.91404 1.13634 0.94692 0.92684 0.91541 0.95261 0.94653 0.92751 0.85229 0.87580 0.95106 0.87245 0.95746 0.91637 0.89777 0.88568 0.89265 0.90069 0.91112 0.75141 0.87311 0.86996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.81 10.19 59.84 0.61 2.42 16 2 N -0.62 -13.65 2.99 -181.00 -0.54 -14.19 16 3 C 0.25 6.37 4.92 -5.20 -0.03 6.34 16 4 C -0.53 -14.67 9.39 -34.44 -0.32 -15.00 16 5 H 0.06 1.71 7.81 -52.49 -0.41 1.30 16 6 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 7 N -0.90 -25.91 13.29 55.43 0.74 -25.18 16 8 Si 0.90 21.61 29.54 -169.99 -5.02 16.59 16 9 H -0.27 -6.58 7.11 56.52 0.40 -6.17 16 10 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 11 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 12 C 0.24 5.08 6.55 -83.78 -0.55 4.53 16 13 C -0.19 -3.94 9.21 -39.38 -0.36 -4.30 16 14 C -0.07 -1.22 7.95 -39.61 -0.31 -1.54 16 15 C -0.16 -2.75 4.89 -104.59 -0.51 -3.26 16 16 C 0.09 1.27 4.98 -4.98 -0.02 1.25 16 17 N -0.52 -6.42 4.60 -236.34 -1.09 -7.51 16 18 C 0.02 0.22 8.90 60.06 0.53 0.76 16 19 C 0.05 0.45 2.65 -67.72 -0.18 0.27 16 20 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 21 C -0.13 -0.77 5.45 -25.10 -0.14 -0.91 16 22 C 0.10 0.48 7.78 -3.12 -0.02 0.45 16 23 N -0.73 -5.53 6.25 -59.14 -0.37 -5.90 16 24 C 0.53 6.10 8.02 -10.76 -0.09 6.01 16 25 O -0.52 -8.02 15.12 5.55 0.08 -7.93 16 26 C -0.05 -0.86 9.69 -39.61 -0.38 -1.25 16 27 C -0.22 -4.18 9.21 -39.38 -0.36 -4.54 16 28 H 0.03 0.58 8.14 -51.93 -0.42 0.15 16 29 H 0.05 0.91 6.20 -51.93 -0.32 0.58 16 30 H 0.07 1.23 8.07 -51.93 -0.42 0.81 16 31 H 0.03 0.78 8.07 -51.93 -0.42 0.36 16 32 H 0.04 0.95 6.18 -51.93 -0.32 0.63 16 33 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 34 H 0.13 2.95 6.14 -52.49 -0.32 2.63 16 35 H 0.11 1.68 8.03 -52.49 -0.42 1.26 16 36 H 0.03 0.44 8.06 -51.93 -0.42 0.02 16 37 H 0.11 1.78 4.94 -51.93 -0.26 1.52 16 38 H 0.02 0.25 8.14 -51.93 -0.42 -0.17 16 39 H 0.06 0.57 6.72 -51.93 -0.35 0.22 16 40 H 0.08 1.10 6.16 -51.93 -0.32 0.78 16 41 H 0.10 0.66 7.75 -51.93 -0.40 0.26 16 42 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 43 H 0.08 0.24 8.14 -51.93 -0.42 -0.18 16 44 H 0.07 0.22 8.14 -51.93 -0.42 -0.21 16 45 H 0.41 2.48 8.96 -40.82 -0.37 2.11 16 46 H 0.11 1.80 8.06 -52.48 -0.42 1.37 16 47 H 0.11 1.91 6.14 -52.49 -0.32 1.59 16 LS Contribution 372.81 15.07 5.62 5.62 Total: -1.00 -32.47 372.81 -9.98 -42.45 By element: Atomic # 1 Polarization: 10.39 SS G_CDS: -7.16 Total: 3.23 kcal Atomic # 6 Polarization: -4.94 SS G_CDS: -2.24 Total: -7.18 kcal Atomic # 7 Polarization: -51.51 SS G_CDS: -1.26 Total: -52.77 kcal Atomic # 8 Polarization: -8.02 SS G_CDS: 0.08 Total: -7.93 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -32.47 -9.98 -42.45 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000770378185.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.301 kcal (2) G-P(sol) polarization free energy of solvation -32.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.447 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds