Wall clock time and date at job start Tue Mar 31 2020 11:44:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46491 * 120.00453 * 2 1 4 4 C 1.50702 * 109.46957 * 90.00133 * 3 2 1 5 5 H 1.08002 * 120.00299 * 0.02562 * 4 3 2 6 6 C 1.37884 * 119.99942 * 179.72213 * 4 3 2 7 7 N 1.31514 * 119.99698 * 0.28408 * 6 4 3 8 8 Si 1.86794 * 119.99837 * 180.27476 * 6 4 3 9 9 H 1.48496 * 109.47341 * 0.02562 * 8 6 4 10 10 H 1.48508 * 109.46983 * 120.00379 * 8 6 4 11 11 H 1.48503 * 109.47491 * 240.00192 * 8 6 4 12 12 C 1.39676 * 119.99572 * 180.02562 * 2 1 3 13 13 C 1.38917 * 120.07633 * 179.72150 * 12 2 1 14 14 C 1.38101 * 119.92695 * 179.76656 * 13 12 2 15 15 C 1.38286 * 120.07317 * 0.50927 * 14 13 12 16 16 C 1.50701 * 119.92333 * 179.72795 * 15 14 13 17 17 N 1.46900 * 109.46525 * 270.01637 * 16 15 14 18 18 C 1.46900 * 111.00227 * 66.04990 * 17 16 15 19 19 C 1.46901 * 111.00069 * 189.99991 * 17 16 15 20 20 H 1.09001 * 110.43306 * 300.70570 * 19 17 16 21 21 C 1.54630 * 110.48969 * 178.16117 * 19 17 16 22 22 C 1.54481 * 101.76654 * 216.52681 * 21 19 17 23 23 N 1.46767 * 105.47255 * 25.41288 * 22 21 19 24 24 C 1.34654 * 111.33593 * 342.87130 * 23 22 21 25 25 O 1.21284 * 125.06809 * 180.51851 * 24 23 22 26 26 C 1.38283 * 120.15184 * 359.73722 * 15 14 13 27 27 C 1.38103 * 120.07475 * 0.02562 * 26 15 14 28 28 H 1.09000 * 109.47583 * 89.99529 * 1 2 3 29 29 H 1.09005 * 109.47610 * 210.00002 * 1 2 3 30 30 H 1.09006 * 109.46979 * 329.99538 * 1 2 3 31 31 H 1.09004 * 109.47166 * 330.00399 * 3 2 1 32 32 H 1.08994 * 109.47507 * 210.00106 * 3 2 1 33 33 H 0.97005 * 119.99651 * 179.97438 * 7 6 4 34 34 H 1.08002 * 120.03205 * 359.97438 * 13 12 2 35 35 H 1.07999 * 119.96139 * 180.25385 * 14 13 12 36 36 H 1.08993 * 109.47554 * 30.01482 * 16 15 14 37 37 H 1.09003 * 109.47368 * 150.02195 * 16 15 14 38 38 H 1.08999 * 109.47128 * 59.99641 * 18 17 16 39 39 H 1.08997 * 109.47693 * 179.97438 * 18 17 16 40 40 H 1.09005 * 109.46834 * 300.00056 * 18 17 16 41 41 H 1.08999 * 110.96600 * 334.64310 * 21 19 17 42 42 H 1.08998 * 110.96886 * 98.36369 * 21 19 17 43 43 H 1.08994 * 110.24744 * 144.41853 * 22 21 19 44 44 H 1.09005 * 110.24140 * 266.41697 * 22 21 19 45 45 H 0.97001 * 124.34951 * 162.98373 * 23 22 21 46 46 H 1.08004 * 119.96569 * 179.97438 * 26 15 14 47 47 H 1.07995 * 120.04209 * 179.97438 * 27 26 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 2.4487 1.7036 1.4208 5 1 2.0982 1.0956 2.2418 6 6 3.1316 2.8746 1.6728 7 7 3.5589 3.6147 0.6732 8 14 3.4497 3.4098 3.4340 9 1 2.8715 2.4100 4.3673 10 1 4.9134 3.5122 3.6635 11 1 2.8177 4.7325 3.6712 12 6 2.1632 -1.2097 -0.0005 13 6 3.5524 -1.2116 -0.0064 14 6 4.2397 -2.4095 -0.0020 15 6 3.5466 -3.6061 -0.0025 16 6 4.3001 -4.9112 -0.0039 17 7 4.5443 -5.3340 -1.3894 18 6 5.4548 -4.4041 -2.0709 19 6 5.0624 -6.7077 -1.4371 20 1 5.9953 -6.7822 -0.8783 21 6 5.2717 -7.1567 -2.9020 22 6 4.8682 -8.6464 -2.8355 23 7 3.9457 -8.7519 -1.6989 24 6 4.0391 -7.6788 -0.8909 25 8 3.3970 -7.5132 0.1246 26 6 2.1638 -3.6079 -0.0018 27 6 1.4702 -2.4136 -0.0012 28 1 -0.3634 0.0001 -1.0276 29 1 -0.3634 -0.8900 0.5138 30 1 -0.3633 0.8900 0.5139 31 1 1.6084 2.0283 -0.5138 32 1 3.1499 1.1383 -0.5138 33 1 4.0390 4.4388 0.8505 34 1 4.0942 -0.2774 -0.0109 35 1 5.3197 -2.4116 -0.0024 36 1 5.2527 -4.7815 0.5096 37 1 3.7111 -5.6714 0.5094 38 1 6.4071 -4.3746 -1.5414 39 1 5.6189 -4.7408 -3.0945 40 1 5.0143 -3.4071 -2.0821 41 1 4.6169 -6.6050 -3.5763 42 1 6.3149 -7.0473 -3.1982 43 1 4.3671 -8.9429 -3.7569 44 1 5.7475 -9.2681 -2.6666 45 1 3.3465 -9.4996 -1.5479 46 1 1.6255 -4.5442 -0.0026 47 1 0.3903 -2.4156 -0.0012 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000770378185.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:44:20 Heat of formation + Delta-G solvation = -7.451965 kcal Electronic energy + Delta-G solvation = -26424.426259 eV Core-core repulsion = 22799.476149 eV Total energy + Delta-G solvation = -3624.950110 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.53557 -40.42797 -38.19011 -37.44507 -36.50804 -34.74166 -32.09917 -31.92034 -30.56835 -29.59450 -28.61610 -27.87145 -26.32476 -24.86607 -23.17332 -22.99049 -22.46046 -21.03722 -20.86871 -18.63711 -18.35925 -18.07109 -17.83193 -16.88121 -16.56597 -16.31526 -16.04404 -15.45919 -15.36433 -15.24284 -15.19171 -14.65566 -14.53891 -14.33540 -14.30930 -14.07578 -13.80534 -13.54087 -13.20659 -13.17279 -13.06319 -12.82478 -12.71769 -12.67313 -12.55282 -12.42068 -12.16321 -12.09621 -11.76912 -11.72015 -11.41937 -10.73198 -10.63890 -10.33992 -10.01533 -9.67135 -9.28567 -8.36286 -7.79734 -6.37254 0.69388 0.82374 1.35465 1.37183 1.49660 1.52863 2.34222 2.41657 2.63253 2.93038 3.05872 3.35769 3.38453 3.66774 4.02994 4.08382 4.16277 4.19604 4.24456 4.37208 4.43822 4.47136 4.59737 4.63969 4.70462 4.70788 4.83336 4.84418 4.86846 4.98376 5.00474 5.02311 5.12730 5.16201 5.20958 5.22286 5.33110 5.58050 5.67356 5.69761 5.83823 5.92102 6.04086 6.06846 6.07643 6.18500 6.20594 6.50332 6.83107 6.93026 7.28701 7.34512 8.83286 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.022983 B = 0.002652 C = 0.002579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1217.980535 B =10556.813720 C =10854.108341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.098 3.902 2 N -0.632 5.632 3 C 0.267 3.733 4 C -0.540 4.540 5 H 0.047 0.953 6 C 0.013 3.987 7 N -0.926 5.926 8 Si 0.961 3.039 9 H -0.273 1.273 10 H -0.276 1.276 11 H -0.273 1.273 12 C 0.215 3.785 13 C -0.212 4.212 14 C -0.063 4.063 15 C -0.150 4.150 16 C 0.093 3.907 17 N -0.528 5.528 18 C 0.022 3.978 19 C 0.042 3.958 20 H 0.084 0.916 21 C -0.120 4.120 22 C 0.103 3.897 23 N -0.723 5.723 24 C 0.518 3.482 25 O -0.569 6.569 26 C -0.052 4.052 27 C -0.217 4.217 28 H 0.053 0.947 29 H 0.075 0.925 30 H 0.057 0.943 31 H 0.010 0.990 32 H 0.013 0.987 33 H 0.267 0.733 34 H 0.100 0.900 35 H 0.124 0.876 36 H 0.034 0.966 37 H 0.098 0.902 38 H 0.033 0.967 39 H 0.092 0.908 40 H 0.058 0.942 41 H 0.090 0.910 42 H 0.116 0.884 43 H 0.104 0.896 44 H 0.095 0.905 45 H 0.417 0.583 46 H 0.123 0.877 47 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.678 -25.511 -10.059 27.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.340 5.340 3 C 0.145 3.855 4 C -0.579 4.579 5 H 0.065 0.935 6 C -0.186 4.186 7 N -0.566 5.566 8 Si 0.786 3.214 9 H -0.197 1.197 10 H -0.202 1.202 11 H -0.199 1.199 12 C 0.110 3.890 13 C -0.235 4.235 14 C -0.082 4.082 15 C -0.153 4.153 16 C -0.034 4.034 17 N -0.253 5.253 18 C -0.126 4.126 19 C -0.069 4.069 20 H 0.102 0.898 21 C -0.158 4.158 22 C -0.021 4.021 23 N -0.379 5.379 24 C 0.304 3.696 25 O -0.448 6.448 26 C -0.071 4.071 27 C -0.240 4.240 28 H 0.071 0.929 29 H 0.094 0.906 30 H 0.076 0.924 31 H 0.028 0.972 32 H 0.031 0.969 33 H 0.076 0.924 34 H 0.118 0.882 35 H 0.142 0.858 36 H 0.053 0.947 37 H 0.116 0.884 38 H 0.052 0.948 39 H 0.111 0.889 40 H 0.077 0.923 41 H 0.108 0.892 42 H 0.135 0.865 43 H 0.122 0.878 44 H 0.113 0.887 45 H 0.256 0.744 46 H 0.141 0.859 47 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 3.955 -24.974 -9.876 27.146 hybrid contribution 0.610 0.759 1.510 1.797 sum 4.565 -24.215 -8.366 26.023 Atomic orbital electron populations 1.21595 0.79503 1.02448 1.00951 1.46959 1.05591 1.03695 1.77741 1.18784 0.91132 0.80149 0.95426 1.21800 1.36179 1.06605 0.93317 0.93478 1.25765 0.95101 0.96302 1.01453 1.70041 1.38923 1.14917 1.32675 0.85460 0.78073 0.78155 0.79703 1.19724 1.20186 1.19871 1.18162 0.91689 0.86309 0.92827 1.20753 0.93054 0.98450 1.11199 1.20789 0.99199 0.90994 0.97191 1.19408 0.93717 0.93847 1.08314 1.21185 0.98362 0.94644 0.89166 1.61999 1.46554 1.00644 1.16083 1.22512 0.93739 0.96598 0.99706 1.22443 0.95819 0.88752 0.99901 0.89822 1.22822 1.04984 0.95117 0.92892 1.22331 0.93785 0.96712 0.89245 1.46241 1.42691 1.22065 1.26855 1.21116 0.82441 0.83638 0.82449 1.90640 1.49755 1.77587 1.26832 1.20748 0.93723 0.96655 0.95969 1.20742 0.99916 0.90673 1.12628 0.92897 0.90641 0.92378 0.97166 0.96908 0.92357 0.88222 0.85820 0.94740 0.88420 0.94850 0.88949 0.92321 0.89168 0.86525 0.87756 0.88658 0.74385 0.85869 0.85191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 3.60 10.19 127.77 1.30 4.90 16 2 N -0.63 -28.86 2.99 -726.56 -2.17 -31.03 16 3 C 0.27 14.33 4.92 85.64 0.42 14.75 16 4 C -0.54 -31.02 9.39 25.60 0.24 -30.77 16 5 H 0.05 2.77 7.81 -2.91 -0.02 2.74 16 6 C 0.01 0.74 5.46 84.66 0.46 1.20 16 7 N -0.93 -54.82 13.29 21.45 0.28 -54.53 16 8 Si 0.96 44.89 29.54 68.60 2.03 46.92 16 9 H -0.27 -12.64 7.11 99.48 0.71 -11.93 16 10 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 11 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 12 C 0.21 9.29 6.55 38.22 0.25 9.54 16 13 C -0.21 -9.21 9.21 22.40 0.21 -9.00 16 14 C -0.06 -2.26 7.95 22.25 0.18 -2.08 16 15 C -0.15 -5.03 4.89 -19.84 -0.10 -5.13 16 16 C 0.09 2.67 4.98 85.56 0.43 3.09 16 17 N -0.53 -12.22 4.60 -901.65 -4.15 -16.37 16 18 C 0.02 0.44 8.90 127.69 1.14 1.58 16 19 C 0.04 0.73 2.65 44.91 0.12 0.85 16 20 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 21 C -0.12 -0.99 5.45 31.65 0.17 -0.82 16 22 C 0.10 0.53 7.78 86.83 0.68 1.20 16 23 N -0.72 -9.10 6.25 -459.48 -2.87 -11.97 16 24 C 0.52 11.14 8.02 87.86 0.70 11.84 16 25 O -0.57 -17.60 15.12 -3.04 -0.05 -17.65 16 26 C -0.05 -1.78 9.69 22.25 0.22 -1.57 16 27 C -0.22 -8.03 9.21 22.40 0.21 -7.82 16 28 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 29 H 0.08 2.42 6.20 -2.38 -0.01 2.40 16 30 H 0.06 2.19 8.07 -2.38 -0.02 2.17 16 31 H 0.01 0.58 8.07 -2.38 -0.02 0.56 16 32 H 0.01 0.74 6.18 -2.39 -0.01 0.73 16 33 H 0.27 14.82 8.31 -92.70 -0.77 14.05 16 34 H 0.10 4.89 6.14 -2.91 -0.02 4.87 16 35 H 0.12 3.92 8.03 -2.91 -0.02 3.90 16 36 H 0.03 0.95 8.06 -2.39 -0.02 0.93 16 37 H 0.10 3.15 4.94 -2.39 -0.01 3.14 16 38 H 0.03 0.61 8.14 -2.39 -0.02 0.59 16 39 H 0.09 1.34 6.72 -2.39 -0.02 1.32 16 40 H 0.06 1.49 6.16 -2.38 -0.01 1.47 16 41 H 0.09 0.91 7.75 -2.39 -0.02 0.89 16 42 H 0.12 0.37 8.14 -2.39 -0.02 0.35 16 43 H 0.10 0.14 8.14 -2.39 -0.02 0.12 16 44 H 0.10 0.12 8.14 -2.38 -0.02 0.10 16 45 H 0.42 4.16 8.96 -92.71 -0.83 3.33 16 46 H 0.12 3.91 8.06 -2.91 -0.02 3.89 16 47 H 0.13 4.26 6.14 -2.91 -0.02 4.24 16 Total: -1.00 -73.26 372.81 -0.16 -73.41 By element: Atomic # 1 Polarization: 19.32 SS G_CDS: 0.15 Total: 19.47 kcal Atomic # 6 Polarization: -14.87 SS G_CDS: 6.62 Total: -8.25 kcal Atomic # 7 Polarization: -104.99 SS G_CDS: -8.90 Total: -113.90 kcal Atomic # 8 Polarization: -17.60 SS G_CDS: -0.05 Total: -17.65 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 2.03 Total: 46.92 kcal Total: -73.26 -0.16 -73.41 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000770378185.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.959 kcal (2) G-P(sol) polarization free energy of solvation -73.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.411 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds