Wall clock time and date at job start Tue Mar 31 2020 11:34:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46498 * 120.00135 * 2 1 4 4 C 1.40004 * 120.00045 * 180.02562 * 2 1 3 5 5 C 1.38855 * 119.99846 * 359.97438 * 4 2 1 6 6 C 1.38094 * 120.00095 * 180.02562 * 5 4 2 7 7 C 1.38862 * 119.99708 * 359.97438 * 6 5 4 8 8 N 1.40005 * 119.99919 * 179.97438 * 7 6 5 9 9 C 1.46842 * 111.00042 * 304.21317 * 8 7 6 10 10 C 1.53032 * 109.52552 * 174.16253 * 9 8 7 11 11 C 1.53124 * 109.27717 * 59.17601 * 10 9 8 12 12 N 1.46503 * 109.52156 * 182.44550 * 11 10 9 13 13 C 1.34781 * 119.99787 * 274.68358 * 12 11 10 14 14 O 1.21687 * 119.99772 * 359.97438 * 13 12 11 15 15 C 1.46371 * 120.00013 * 180.02562 * 13 12 11 16 16 H 1.08000 * 120.00017 * 359.97438 * 15 13 12 17 17 C 1.40051 * 119.99878 * 179.97438 * 15 13 12 18 18 N 1.30666 * 120.00202 * 0.02562 * 17 15 13 19 19 Si 1.86799 * 119.99889 * 179.97438 * 17 15 13 20 20 H 1.48501 * 109.47244 * 90.00125 * 19 17 15 21 21 H 1.48497 * 109.47265 * 210.00304 * 19 17 15 22 22 H 1.48505 * 109.47238 * 330.00246 * 19 17 15 23 23 C 1.53115 * 109.16002 * 302.34632 * 11 10 9 24 24 C 1.46844 * 110.99746 * 180.02562 * 8 7 6 25 25 C 1.38865 * 120.00010 * 0.23522 * 7 6 5 26 26 C 1.38088 * 119.99916 * 359.51080 * 25 7 6 27 27 H 1.09006 * 109.47184 * 239.99355 * 1 2 3 28 28 H 1.08996 * 109.47611 * 359.97438 * 1 2 3 29 29 H 1.09002 * 109.46981 * 119.99741 * 1 2 3 30 30 H 1.08998 * 109.47615 * 270.00378 * 3 2 1 31 31 H 1.09000 * 109.46832 * 30.00102 * 3 2 1 32 32 H 1.08997 * 109.47131 * 149.99527 * 3 2 1 33 33 H 1.08000 * 120.00650 * 359.97438 * 5 4 2 34 34 H 1.07999 * 120.00226 * 179.97438 * 6 5 4 35 35 H 1.09011 * 109.45898 * 294.17554 * 9 8 7 36 36 H 1.08996 * 109.46301 * 54.14113 * 9 8 7 37 37 H 1.09002 * 109.50098 * 299.24123 * 10 9 8 38 38 H 1.08996 * 109.53898 * 179.13520 * 10 9 8 39 39 H 1.08998 * 109.57813 * 62.28857 * 11 10 9 40 40 H 0.96998 * 120.00566 * 94.68060 * 12 11 10 41 41 H 0.97003 * 120.00169 * 180.02562 * 18 17 15 42 42 H 1.09004 * 109.50745 * 297.71190 * 23 11 10 43 43 H 1.09002 * 109.53686 * 177.61650 * 23 11 10 44 44 H 1.09001 * 109.46456 * 305.84997 * 24 8 7 45 45 H 1.08998 * 109.46607 * 65.83752 * 24 8 7 46 46 H 1.07995 * 119.99589 * 179.74208 * 25 7 6 47 47 H 1.07999 * 120.00001 * 180.25664 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1650 -1.2125 -0.0005 5 6 1.4707 -2.4150 -0.0005 6 6 2.1611 -3.6109 -0.0005 7 6 3.5498 -3.6109 -0.0011 8 7 4.2498 -4.8234 -0.0005 9 6 3.8458 -5.6638 1.1338 10 6 4.5200 -7.0330 1.0217 11 6 6.0401 -6.8489 1.0145 12 7 6.6902 -8.1513 0.8486 13 6 6.9257 -8.9288 1.9241 14 8 6.5988 -8.5487 3.0329 15 6 7.5757 -10.2297 1.7584 16 1 7.8662 -10.5668 0.7744 17 6 7.8209 -11.0373 2.8761 18 7 7.4690 -10.6297 4.0666 19 14 8.6498 -12.6979 2.6646 20 1 10.1219 -12.5335 2.7706 21 1 8.1778 -13.6253 3.7240 22 1 8.3088 -13.2552 1.3310 23 6 6.4297 -5.9309 -0.1473 24 6 5.7001 -4.5936 -0.0006 25 6 4.2441 -2.4083 0.0033 26 6 3.5536 -1.2124 -0.0020 27 1 -0.3634 -0.5140 0.8900 28 1 -0.3634 1.0276 0.0005 29 1 -0.3633 -0.5138 -0.8900 30 1 2.3792 1.5834 -1.0276 31 1 1.6084 2.0283 0.5139 32 1 3.1498 1.1384 0.5139 33 1 0.3907 -2.4151 0.0003 34 1 1.6212 -4.5462 -0.0001 35 1 4.1478 -5.1855 2.0657 36 1 2.7632 -5.7901 1.1248 37 1 4.2078 -7.5176 0.0965 38 1 4.2324 -7.6517 1.8717 39 1 6.3581 -6.4004 1.9556 40 1 6.9511 -8.4541 -0.0352 41 1 7.6392 -11.1889 4.8407 42 1 6.1476 -6.3982 -1.0909 43 1 7.5064 -5.7615 -0.1329 44 1 5.9647 -3.9427 -0.8339 45 1 5.9931 -4.1209 0.9368 46 1 5.3240 -2.4084 0.0071 47 1 4.0936 -0.2771 -0.0027 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000773159086.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:34:24 Heat of formation + Delta-G solvation = 6.048216 kcal Electronic energy + Delta-G solvation = -26046.064741 eV Core-core repulsion = 22421.700042 eV Total energy + Delta-G solvation = -3624.364699 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.33024 -38.74396 -37.24766 -35.79825 -33.69164 -32.35670 -31.62684 -30.72143 -30.41828 -28.39020 -28.30454 -26.24449 -24.62932 -23.70593 -22.93678 -21.49411 -20.62702 -19.62507 -19.36969 -17.88075 -17.11240 -16.37790 -15.95900 -15.33644 -15.30331 -15.11564 -14.78080 -14.43722 -14.17357 -13.97010 -13.76490 -13.62978 -13.35518 -12.97002 -12.89738 -12.62522 -12.52518 -12.35959 -12.23728 -12.09235 -11.94116 -11.66424 -11.35741 -11.03659 -10.99704 -10.93022 -10.82339 -10.43955 -10.30185 -10.17065 -10.01544 -9.94509 -8.95589 -8.82801 -8.63889 -7.57352 -7.44925 -6.98587 -6.15609 -4.60964 1.40092 1.58310 2.94832 3.15689 3.22554 3.26000 3.72355 4.04702 4.12897 4.61208 4.67994 4.70510 4.79497 4.90938 4.94093 5.03537 5.06146 5.23214 5.27886 5.33411 5.36084 5.38393 5.39888 5.44415 5.58086 5.60305 5.66234 5.82378 5.87070 5.94449 5.99360 6.00064 6.05719 6.12602 6.14964 6.28135 6.44056 6.47112 6.66127 6.74811 6.88367 7.09440 7.21499 7.26373 7.46116 7.53909 7.98149 8.16449 8.37468 9.05550 9.59119 10.63430 10.82686 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.041226 B = 0.002153 C = 0.002121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 679.014095 B =13001.834123 C =13200.704764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.100 3.900 2 N -0.645 5.645 3 C 0.097 3.903 4 C 0.181 3.819 5 C -0.168 4.168 6 C -0.094 4.094 7 C 0.066 3.934 8 N -0.486 5.486 9 C 0.063 3.937 10 C -0.126 4.126 11 C 0.156 3.844 12 N -0.762 5.762 13 C 0.556 3.444 14 O -0.581 6.581 15 C -0.546 4.546 16 H 0.067 0.933 17 C 0.087 3.913 18 N -0.769 5.769 19 Si 0.907 3.093 20 H -0.273 1.273 21 H -0.280 1.280 22 H -0.265 1.265 23 C -0.123 4.123 24 C 0.058 3.942 25 C -0.126 4.126 26 C -0.169 4.169 27 H 0.051 0.949 28 H 0.069 0.931 29 H 0.051 0.949 30 H 0.044 0.956 31 H 0.062 0.938 32 H 0.067 0.933 33 H 0.120 0.880 34 H 0.124 0.876 35 H 0.041 0.959 36 H 0.076 0.924 37 H 0.065 0.935 38 H 0.076 0.924 39 H 0.072 0.928 40 H 0.380 0.620 41 H 0.267 0.733 42 H 0.071 0.929 43 H 0.071 0.929 44 H 0.078 0.922 45 H 0.044 0.956 46 H 0.126 0.874 47 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.897 20.639 -9.882 25.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 N -0.360 5.360 3 C -0.047 4.047 4 C 0.082 3.918 5 C -0.190 4.190 6 C -0.115 4.115 7 C -0.032 4.032 8 N -0.202 5.202 9 C -0.062 4.062 10 C -0.165 4.165 11 C 0.049 3.951 12 N -0.416 5.416 13 C 0.359 3.641 14 O -0.464 6.464 15 C -0.583 4.583 16 H 0.085 0.915 17 C -0.132 4.132 18 N -0.397 5.397 19 Si 0.731 3.269 20 H -0.198 1.198 21 H -0.205 1.205 22 H -0.189 1.189 23 C -0.162 4.162 24 C -0.070 4.070 25 C -0.147 4.147 26 C -0.192 4.192 27 H 0.069 0.931 28 H 0.088 0.912 29 H 0.070 0.930 30 H 0.062 0.938 31 H 0.081 0.919 32 H 0.085 0.915 33 H 0.138 0.862 34 H 0.142 0.858 35 H 0.060 0.940 36 H 0.094 0.906 37 H 0.084 0.916 38 H 0.095 0.905 39 H 0.090 0.910 40 H 0.211 0.789 41 H 0.078 0.922 42 H 0.090 0.910 43 H 0.090 0.910 44 H 0.097 0.903 45 H 0.062 0.938 46 H 0.144 0.856 47 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -11.312 20.702 -9.251 25.340 hybrid contribution 0.663 -0.525 0.043 0.847 sum -10.649 20.177 -9.208 24.603 Atomic orbital electron populations 1.21525 0.79829 1.01995 1.01014 1.46252 1.04629 1.03001 1.82074 1.21588 0.97277 0.85000 1.00800 1.17730 0.91077 0.85489 0.97553 1.20478 0.99264 0.90725 1.08577 1.20571 0.92374 0.97620 1.00903 1.18855 0.92857 0.88992 1.02514 1.59251 1.05737 1.13088 1.42118 1.22229 1.00132 0.93743 0.90142 1.22053 0.96601 0.95032 1.02835 1.20494 0.91210 0.85880 0.97499 1.46169 1.66481 1.18510 1.10435 1.18204 0.78755 0.84630 0.82463 1.90591 1.56511 1.74538 1.24769 1.20900 1.41531 1.01595 0.94272 0.91501 1.25703 0.93969 0.98849 0.94695 1.70020 1.35474 1.35523 0.98721 0.86395 0.79751 0.81982 0.78737 1.19799 1.20509 1.18935 1.21897 0.99664 0.94812 0.99810 1.22182 0.86098 0.97801 1.00874 1.21103 0.99830 0.91351 1.02410 1.20505 0.91975 0.98078 1.08655 0.93059 0.91244 0.93046 0.93786 0.91905 0.91487 0.86240 0.85791 0.94044 0.90602 0.91592 0.90507 0.91017 0.78907 0.92186 0.91009 0.91004 0.90316 0.93809 0.85601 0.86277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.66 9.40 59.85 0.56 1.22 16 2 N -0.64 -5.73 3.42 -187.48 -0.64 -6.37 16 3 C 0.10 0.63 10.16 59.85 0.61 1.24 16 4 C 0.18 2.00 6.56 -83.66 -0.55 1.45 16 5 C -0.17 -1.87 9.31 -39.41 -0.37 -2.24 16 6 C -0.09 -1.16 9.16 -39.40 -0.36 -1.52 16 7 C 0.07 0.88 5.65 -83.66 -0.47 0.41 16 8 N -0.49 -6.85 4.71 -171.08 -0.81 -7.65 16 9 C 0.06 0.96 5.26 -3.84 -0.02 0.94 16 10 C -0.13 -2.25 5.67 -26.65 -0.15 -2.40 16 11 C 0.16 2.98 2.52 -67.81 -0.17 2.81 16 12 N -0.76 -17.00 5.08 -55.09 -0.28 -17.28 16 13 C 0.56 15.76 7.72 -12.99 -0.10 15.66 16 14 O -0.58 -18.72 14.68 5.20 0.08 -18.65 16 15 C -0.55 -15.48 9.54 -35.63 -0.34 -15.82 16 16 H 0.07 1.74 7.85 -52.49 -0.41 1.33 16 17 C 0.09 2.45 5.50 -17.37 -0.10 2.36 16 18 N -0.77 -23.18 11.83 55.55 0.66 -22.52 16 19 Si 0.91 20.29 29.56 -169.99 -5.02 15.26 16 20 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 21 H -0.28 -6.14 7.11 56.52 0.40 -5.73 16 22 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 23 C -0.12 -1.83 5.57 -26.65 -0.15 -1.98 16 24 C 0.06 0.77 4.15 -3.83 -0.02 0.76 16 25 C -0.13 -1.52 8.82 -39.40 -0.35 -1.87 16 26 C -0.17 -1.88 9.20 -39.41 -0.36 -2.24 16 27 H 0.05 0.33 7.95 -51.93 -0.41 -0.08 16 28 H 0.07 0.32 7.79 -51.93 -0.40 -0.08 16 29 H 0.05 0.33 7.95 -51.93 -0.41 -0.08 16 30 H 0.04 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.06 0.31 7.92 -51.93 -0.41 -0.10 16 32 H 0.07 0.43 6.20 -51.93 -0.32 0.11 16 33 H 0.12 1.12 6.73 -52.49 -0.35 0.77 16 34 H 0.12 1.43 7.15 -52.49 -0.38 1.06 16 35 H 0.04 0.66 8.14 -51.92 -0.42 0.24 16 36 H 0.08 1.05 6.70 -51.93 -0.35 0.70 16 37 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 38 H 0.08 1.60 8.14 -51.93 -0.42 1.18 16 39 H 0.07 1.58 7.57 -51.93 -0.39 1.19 16 40 H 0.38 7.52 8.58 -40.82 -0.35 7.17 16 41 H 0.27 7.32 8.29 -40.82 -0.34 6.98 16 42 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 43 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 44 H 0.08 0.92 6.99 -51.93 -0.36 0.55 16 45 H 0.04 0.59 7.73 -51.93 -0.40 0.19 16 46 H 0.13 1.38 5.80 -52.49 -0.30 1.07 16 47 H 0.12 1.10 6.14 -52.49 -0.32 0.77 16 LS Contribution 370.98 15.07 5.59 5.59 Total: -1.00 -34.72 370.98 -10.01 -44.73 By element: Atomic # 1 Polarization: 15.35 SS G_CDS: -7.26 Total: 8.09 kcal Atomic # 6 Polarization: 1.12 SS G_CDS: -2.33 Total: -1.22 kcal Atomic # 7 Polarization: -52.75 SS G_CDS: -1.07 Total: -53.82 kcal Atomic # 8 Polarization: -18.72 SS G_CDS: 0.08 Total: -18.65 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -5.02 Total: 15.26 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -34.72 -10.01 -44.73 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000773159086.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.782 kcal (2) G-P(sol) polarization free energy of solvation -34.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.734 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds