Wall clock time and date at job start Tue Mar 31 2020 11:34:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46498 * 120.00135 * 2 1 4 4 C 1.40004 * 120.00045 * 180.02562 * 2 1 3 5 5 C 1.38855 * 119.99846 * 359.97438 * 4 2 1 6 6 C 1.38094 * 120.00095 * 180.02562 * 5 4 2 7 7 C 1.38862 * 119.99708 * 359.97438 * 6 5 4 8 8 N 1.40005 * 119.99919 * 179.97438 * 7 6 5 9 9 C 1.46842 * 111.00042 * 304.21317 * 8 7 6 10 10 C 1.53032 * 109.52552 * 174.16253 * 9 8 7 11 11 C 1.53124 * 109.27717 * 59.17601 * 10 9 8 12 12 N 1.46503 * 109.52156 * 182.44550 * 11 10 9 13 13 C 1.34781 * 119.99787 * 274.68358 * 12 11 10 14 14 O 1.21687 * 119.99772 * 359.97438 * 13 12 11 15 15 C 1.46371 * 120.00013 * 180.02562 * 13 12 11 16 16 H 1.08000 * 120.00017 * 359.97438 * 15 13 12 17 17 C 1.40051 * 119.99878 * 179.97438 * 15 13 12 18 18 N 1.30666 * 120.00202 * 0.02562 * 17 15 13 19 19 Si 1.86799 * 119.99889 * 179.97438 * 17 15 13 20 20 H 1.48501 * 109.47244 * 90.00125 * 19 17 15 21 21 H 1.48497 * 109.47265 * 210.00304 * 19 17 15 22 22 H 1.48505 * 109.47238 * 330.00246 * 19 17 15 23 23 C 1.53115 * 109.16002 * 302.34632 * 11 10 9 24 24 C 1.46844 * 110.99746 * 180.02562 * 8 7 6 25 25 C 1.38865 * 120.00010 * 0.23522 * 7 6 5 26 26 C 1.38088 * 119.99916 * 359.51080 * 25 7 6 27 27 H 1.09006 * 109.47184 * 239.99355 * 1 2 3 28 28 H 1.08996 * 109.47611 * 359.97438 * 1 2 3 29 29 H 1.09002 * 109.46981 * 119.99741 * 1 2 3 30 30 H 1.08998 * 109.47615 * 270.00378 * 3 2 1 31 31 H 1.09000 * 109.46832 * 30.00102 * 3 2 1 32 32 H 1.08997 * 109.47131 * 149.99527 * 3 2 1 33 33 H 1.08000 * 120.00650 * 359.97438 * 5 4 2 34 34 H 1.07999 * 120.00226 * 179.97438 * 6 5 4 35 35 H 1.09011 * 109.45898 * 294.17554 * 9 8 7 36 36 H 1.08996 * 109.46301 * 54.14113 * 9 8 7 37 37 H 1.09002 * 109.50098 * 299.24123 * 10 9 8 38 38 H 1.08996 * 109.53898 * 179.13520 * 10 9 8 39 39 H 1.08998 * 109.57813 * 62.28857 * 11 10 9 40 40 H 0.96998 * 120.00566 * 94.68060 * 12 11 10 41 41 H 0.97003 * 120.00169 * 180.02562 * 18 17 15 42 42 H 1.09004 * 109.50745 * 297.71190 * 23 11 10 43 43 H 1.09002 * 109.53686 * 177.61650 * 23 11 10 44 44 H 1.09001 * 109.46456 * 305.84997 * 24 8 7 45 45 H 1.08998 * 109.46607 * 65.83752 * 24 8 7 46 46 H 1.07995 * 119.99589 * 179.74208 * 25 7 6 47 47 H 1.07999 * 120.00001 * 180.25664 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1650 -1.2125 -0.0005 5 6 1.4707 -2.4150 -0.0005 6 6 2.1611 -3.6109 -0.0005 7 6 3.5498 -3.6109 -0.0011 8 7 4.2498 -4.8234 -0.0005 9 6 3.8458 -5.6638 1.1338 10 6 4.5200 -7.0330 1.0217 11 6 6.0401 -6.8489 1.0145 12 7 6.6902 -8.1513 0.8486 13 6 6.9257 -8.9288 1.9241 14 8 6.5988 -8.5487 3.0329 15 6 7.5757 -10.2297 1.7584 16 1 7.8662 -10.5668 0.7744 17 6 7.8209 -11.0373 2.8761 18 7 7.4690 -10.6297 4.0666 19 14 8.6498 -12.6979 2.6646 20 1 10.1219 -12.5335 2.7706 21 1 8.1778 -13.6253 3.7240 22 1 8.3088 -13.2552 1.3310 23 6 6.4297 -5.9309 -0.1473 24 6 5.7001 -4.5936 -0.0006 25 6 4.2441 -2.4083 0.0033 26 6 3.5536 -1.2124 -0.0020 27 1 -0.3634 -0.5140 0.8900 28 1 -0.3634 1.0276 0.0005 29 1 -0.3633 -0.5138 -0.8900 30 1 2.3792 1.5834 -1.0276 31 1 1.6084 2.0283 0.5139 32 1 3.1498 1.1384 0.5139 33 1 0.3907 -2.4151 0.0003 34 1 1.6212 -4.5462 -0.0001 35 1 4.1478 -5.1855 2.0657 36 1 2.7632 -5.7901 1.1248 37 1 4.2078 -7.5176 0.0965 38 1 4.2324 -7.6517 1.8717 39 1 6.3581 -6.4004 1.9556 40 1 6.9511 -8.4541 -0.0352 41 1 7.6392 -11.1889 4.8407 42 1 6.1476 -6.3982 -1.0909 43 1 7.5064 -5.7615 -0.1329 44 1 5.9647 -3.9427 -0.8339 45 1 5.9931 -4.1209 0.9368 46 1 5.3240 -2.4084 0.0071 47 1 4.0936 -0.2771 -0.0027 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000773159086.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:34:23 Heat of formation + Delta-G solvation = -17.635350 kcal Electronic energy + Delta-G solvation = -26047.091737 eV Core-core repulsion = 22421.700042 eV Total energy + Delta-G solvation = -3625.391695 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.36112 -39.96528 -38.89434 -36.95547 -35.20976 -34.46727 -32.63230 -32.28121 -31.50156 -29.45341 -28.94052 -28.18360 -25.66585 -24.81280 -24.12016 -22.54769 -21.85900 -21.30546 -20.75781 -19.08927 -18.74995 -17.46679 -17.30792 -16.80846 -16.55169 -15.98519 -15.88383 -15.76898 -15.58661 -15.25588 -15.01827 -14.62671 -14.49284 -14.41455 -14.15386 -13.81943 -13.51358 -13.43084 -13.33095 -13.10472 -13.04340 -12.79223 -12.76297 -12.68120 -12.61381 -12.34549 -12.20556 -12.01764 -11.87950 -11.65993 -11.36914 -10.94283 -10.91996 -9.84511 -9.81442 -9.56901 -9.41959 -8.27516 -7.82887 -6.83941 0.52697 0.67153 1.40200 1.41896 1.57036 2.25271 2.32409 2.49018 2.73036 3.03705 3.13784 3.61368 3.78240 3.86223 4.04033 4.08294 4.15992 4.16230 4.22974 4.35202 4.43300 4.45663 4.51568 4.55178 4.59037 4.66227 4.69278 4.79414 4.79891 4.81611 4.88349 4.91533 4.96571 5.01733 5.15977 5.21720 5.25609 5.32451 5.33118 5.37933 5.52063 5.79544 5.91102 6.13398 6.26887 6.33412 6.36631 6.43967 6.65778 6.88299 7.59803 8.52434 8.69878 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.041226 B = 0.002153 C = 0.002121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 679.014095 B =13001.834123 C =13200.704764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.649 5.649 3 C 0.091 3.909 4 C 0.180 3.820 5 C -0.176 4.176 6 C -0.100 4.100 7 C 0.039 3.961 8 N -0.486 5.486 9 C 0.075 3.925 10 C -0.116 4.116 11 C 0.153 3.847 12 N -0.750 5.750 13 C 0.540 3.460 14 O -0.632 6.632 15 C -0.574 4.574 16 H 0.087 0.913 17 C 0.027 3.973 18 N -0.823 5.823 19 Si 0.998 3.002 20 H -0.261 1.261 21 H -0.274 1.274 22 H -0.249 1.249 23 C -0.110 4.110 24 C 0.061 3.939 25 C -0.128 4.128 26 C -0.178 4.178 27 H 0.050 0.950 28 H 0.091 0.909 29 H 0.052 0.948 30 H 0.050 0.950 31 H 0.082 0.918 32 H 0.066 0.934 33 H 0.135 0.865 34 H 0.126 0.874 35 H 0.026 0.974 36 H 0.089 0.911 37 H 0.074 0.926 38 H 0.036 0.964 39 H 0.035 0.965 40 H 0.394 0.606 41 H 0.273 0.727 42 H 0.085 0.915 43 H 0.081 0.919 44 H 0.105 0.895 45 H 0.039 0.961 46 H 0.135 0.865 47 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.974 21.619 -12.000 27.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.362 5.362 3 C -0.052 4.052 4 C 0.078 3.922 5 C -0.199 4.199 6 C -0.121 4.121 7 C -0.059 4.059 8 N -0.202 5.202 9 C -0.052 4.052 10 C -0.155 4.155 11 C 0.048 3.952 12 N -0.403 5.403 13 C 0.344 3.656 14 O -0.519 6.519 15 C -0.611 4.611 16 H 0.105 0.895 17 C -0.188 4.188 18 N -0.452 5.452 19 Si 0.817 3.183 20 H -0.186 1.186 21 H -0.199 1.199 22 H -0.172 1.172 23 C -0.148 4.148 24 C -0.066 4.066 25 C -0.149 4.149 26 C -0.200 4.200 27 H 0.069 0.931 28 H 0.110 0.890 29 H 0.071 0.929 30 H 0.069 0.931 31 H 0.100 0.900 32 H 0.085 0.915 33 H 0.152 0.848 34 H 0.144 0.856 35 H 0.044 0.956 36 H 0.108 0.892 37 H 0.093 0.907 38 H 0.055 0.945 39 H 0.053 0.947 40 H 0.228 0.772 41 H 0.083 0.917 42 H 0.103 0.897 43 H 0.099 0.901 44 H 0.123 0.877 45 H 0.057 0.943 46 H 0.153 0.847 47 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -11.414 21.749 -11.437 27.094 hybrid contribution 0.590 -0.648 0.689 1.115 sum -10.824 21.100 -10.748 26.037 Atomic orbital electron populations 1.21685 0.78599 1.03549 1.01050 1.46552 1.05661 1.02964 1.81072 1.21757 0.97509 0.84432 1.01504 1.17953 0.91406 0.86415 0.96418 1.20660 1.00105 0.90515 1.08597 1.20704 0.92274 0.98292 1.00826 1.18941 0.93290 0.88839 1.04808 1.59280 1.06061 1.13785 1.41087 1.22042 1.00541 0.92240 0.90366 1.21872 0.95938 0.96361 1.01350 1.20642 0.91720 0.84950 0.97933 1.45863 1.65654 1.19035 1.09761 1.18577 0.78609 0.85548 0.82888 1.90546 1.58549 1.75762 1.27043 1.21449 1.41946 1.02075 0.95621 0.89506 1.26982 0.94146 1.03773 0.93865 1.70195 1.37051 1.37873 1.00109 0.85022 0.78520 0.75365 0.79385 1.18604 1.19887 1.17224 1.21795 1.00498 0.94581 0.97925 1.22203 0.85717 0.97000 1.01723 1.21260 1.00399 0.91324 1.01935 1.20730 0.92288 0.98491 1.08521 0.93101 0.89024 0.92894 0.93141 0.89980 0.91524 0.84756 0.85597 0.95555 0.89240 0.90740 0.94513 0.94704 0.77195 0.91674 0.89681 0.90060 0.87705 0.94316 0.84724 0.84509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.01 9.40 127.77 1.20 2.21 16 2 N -0.65 -10.01 3.42 -747.06 -2.55 -12.57 16 3 C 0.09 0.95 10.16 127.77 1.30 2.25 16 4 C 0.18 3.65 6.56 38.13 0.25 3.90 16 5 C -0.18 -3.70 9.31 22.38 0.21 -3.49 16 6 C -0.10 -2.39 9.16 22.39 0.20 -2.19 16 7 C 0.04 1.01 5.65 38.13 0.22 1.22 16 8 N -0.49 -13.37 4.71 -695.16 -3.27 -16.65 16 9 C 0.07 2.32 5.26 86.32 0.45 2.78 16 10 C -0.12 -4.33 5.67 30.65 0.17 -4.16 16 11 C 0.15 6.08 2.52 45.07 0.11 6.20 16 12 N -0.75 -34.31 5.08 -446.44 -2.27 -36.58 16 13 C 0.54 31.84 7.72 86.36 0.67 32.50 16 14 O -0.63 -43.07 14.68 -4.31 -0.06 -43.14 16 15 C -0.57 -33.05 9.54 24.83 0.24 -32.81 16 16 H 0.09 4.47 7.85 -2.91 -0.02 4.45 16 17 C 0.03 1.54 5.50 85.31 0.47 2.01 16 18 N -0.82 -51.26 11.83 21.84 0.26 -51.00 16 19 Si 1.00 41.59 29.56 68.60 2.03 43.62 16 20 H -0.26 -10.36 7.11 99.48 0.71 -9.66 16 21 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 22 H -0.25 -9.64 7.11 99.48 0.71 -8.93 16 23 C -0.11 -3.16 5.57 30.65 0.17 -2.99 16 24 C 0.06 1.56 4.15 86.33 0.36 1.92 16 25 C -0.13 -2.92 8.82 22.38 0.20 -2.72 16 26 C -0.18 -3.63 9.20 22.38 0.21 -3.42 16 27 H 0.05 0.56 7.95 -2.38 -0.02 0.54 16 28 H 0.09 0.57 7.79 -2.39 -0.02 0.56 16 29 H 0.05 0.56 7.95 -2.39 -0.02 0.55 16 30 H 0.05 0.48 8.14 -2.39 -0.02 0.46 16 31 H 0.08 0.55 7.92 -2.39 -0.02 0.53 16 32 H 0.07 0.71 6.20 -2.39 -0.01 0.69 16 33 H 0.13 2.31 6.73 -2.91 -0.02 2.29 16 34 H 0.13 2.84 7.15 -2.91 -0.02 2.82 16 35 H 0.03 0.89 8.14 -2.38 -0.02 0.87 16 36 H 0.09 2.51 6.70 -2.39 -0.02 2.49 16 37 H 0.07 2.62 8.14 -2.39 -0.02 2.61 16 38 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 39 H 0.03 1.64 7.57 -2.39 -0.02 1.62 16 40 H 0.39 15.56 8.58 -92.71 -0.80 14.76 16 41 H 0.27 15.43 8.29 -92.71 -0.77 14.66 16 42 H 0.08 2.27 8.14 -2.38 -0.02 2.25 16 43 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 44 H 0.10 2.19 6.99 -2.39 -0.02 2.17 16 45 H 0.04 1.03 7.73 -2.39 -0.02 1.02 16 46 H 0.14 2.72 5.80 -2.91 -0.02 2.70 16 47 H 0.14 2.22 6.14 -2.91 -0.02 2.20 16 Total: -1.00 -78.74 370.98 0.74 -78.00 By element: Atomic # 1 Polarization: 34.94 SS G_CDS: 0.18 Total: 35.12 kcal Atomic # 6 Polarization: -3.24 SS G_CDS: 6.42 Total: 3.19 kcal Atomic # 7 Polarization: -108.96 SS G_CDS: -7.83 Total: -116.79 kcal Atomic # 8 Polarization: -43.07 SS G_CDS: -0.06 Total: -43.14 kcal Atomic # 14 Polarization: 41.59 SS G_CDS: 2.03 Total: 43.62 kcal Total: -78.74 0.74 -78.00 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000773159086.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.364 kcal (2) G-P(sol) polarization free energy of solvation -78.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.999 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds