Wall clock time and date at job start Tue Mar 31 2020 11:44:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46498 * 119.99659 * 2 1 4 4 C 1.50701 * 109.47229 * 269.99991 * 3 2 1 5 5 H 1.08005 * 119.99849 * 0.02562 * 4 3 2 6 6 C 1.37874 * 120.00246 * 180.02562 * 4 3 2 7 7 N 1.31509 * 119.99940 * 0.02562 * 6 4 3 8 8 Si 1.86804 * 120.00358 * 180.02562 * 6 4 3 9 9 H 1.48504 * 109.46534 * 0.02562 * 8 6 4 10 10 H 1.48490 * 109.47208 * 120.00040 * 8 6 4 11 11 H 1.48497 * 109.47080 * 240.00217 * 8 6 4 12 12 C 1.39580 * 120.00052 * 180.02562 * 2 1 3 13 13 C 1.39054 * 119.92023 * 359.97438 * 12 2 1 14 14 C 1.37782 * 120.08212 * 179.97438 * 13 12 2 15 15 C 1.39734 * 119.92022 * 359.97438 * 14 13 12 16 16 C 1.47463 * 120.08512 * 180.02562 * 15 14 13 17 17 N 1.29750 * 120.00457 * 180.02562 * 16 15 14 18 18 N 1.40090 * 120.00191 * 179.97438 * 17 16 15 19 19 C 1.46506 * 120.00148 * 180.02562 * 18 17 16 20 20 H 1.09004 * 109.56961 * 30.14907 * 19 18 17 21 21 C 1.53175 * 109.52535 * 150.31138 * 19 18 17 22 22 C 1.53180 * 109.03606 * 176.88763 * 21 19 18 23 23 C 1.53098 * 109.16075 * 303.01560 * 22 21 19 24 24 O 1.42905 * 109.41155 * 57.61062 * 23 22 21 25 25 C 1.42905 * 114.09831 * 298.83847 * 24 23 22 26 26 C 1.39733 * 119.83722 * 0.27421 * 15 14 13 27 27 C 1.37786 * 119.91428 * 359.44941 * 26 15 14 28 28 H 1.08994 * 109.47063 * 269.99776 * 1 2 3 29 29 H 1.09004 * 109.47335 * 30.00062 * 1 2 3 30 30 H 1.08998 * 109.46918 * 149.99849 * 1 2 3 31 31 H 1.08997 * 109.47414 * 29.99633 * 3 2 1 32 32 H 1.09003 * 109.47186 * 150.00317 * 3 2 1 33 33 H 0.97000 * 120.00390 * 180.02562 * 7 6 4 34 34 H 1.07994 * 119.96182 * 0.02562 * 13 12 2 35 35 H 1.07998 * 120.04514 * 179.97438 * 14 13 12 36 36 H 1.08001 * 119.99412 * 359.97438 * 16 15 14 37 37 H 0.97001 * 120.00714 * 359.97438 * 18 17 16 38 38 H 1.09005 * 109.54265 * 296.75050 * 21 19 18 39 39 H 1.08996 * 109.54473 * 56.92556 * 21 19 18 40 40 H 1.08996 * 109.52502 * 62.92172 * 22 21 19 41 41 H 1.08998 * 109.52189 * 183.11552 * 22 21 19 42 42 H 1.09000 * 109.48092 * 297.63128 * 23 22 21 43 43 H 1.08993 * 109.47885 * 177.58982 * 23 22 21 44 44 H 1.08997 * 109.47832 * 181.14188 * 25 24 23 45 45 H 1.09000 * 109.48236 * 301.17758 * 25 24 23 46 46 H 1.07999 * 120.04110 * 179.70361 * 26 15 14 47 47 H 1.08007 * 119.95861 * 180.27284 * 27 26 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4486 1.7038 -1.4208 5 1 2.0974 1.0962 -2.2417 6 6 3.1268 2.8775 -1.6728 7 7 3.5549 3.6171 -0.6732 8 14 3.4375 3.4172 -3.4340 9 1 2.8585 2.4177 -4.3673 10 1 2.8005 4.7382 -3.6666 11 1 4.9000 3.5248 -3.6680 12 6 2.1630 -1.2088 -0.0005 13 6 1.4660 -2.4121 -0.0005 14 6 2.1516 -3.6072 -0.0016 15 6 3.5489 -3.6092 -0.0032 16 6 4.2863 -4.8862 -0.0049 17 7 5.5838 -4.8863 -0.0059 18 7 6.2843 -6.0995 -0.0070 19 6 7.7493 -6.0995 -0.0076 20 1 8.1147 -5.2117 0.5087 21 6 8.2615 -7.3541 0.7064 22 6 9.7912 -7.3823 0.6313 23 6 10.2234 -7.3319 -0.8365 24 8 9.6881 -6.1570 -1.4491 25 6 8.2603 -6.0986 -1.4508 26 6 4.2459 -2.3981 0.0020 27 6 3.5535 -1.2069 -0.0027 28 1 -0.3633 0.0000 1.0276 29 1 -0.3634 0.8900 -0.5139 30 1 -0.3633 -0.8900 -0.5139 31 1 1.6084 2.0284 0.5137 32 1 3.1499 1.1385 0.5138 33 1 4.0317 4.4431 -0.8504 34 1 0.3861 -2.4099 -0.0005 35 1 1.6097 -4.5414 -0.0012 36 1 3.7463 -5.8215 -0.0045 37 1 5.7994 -6.9396 -0.0067 38 1 7.9480 -7.3333 1.7502 39 1 7.8549 -8.2414 0.2212 40 1 10.1979 -6.5205 1.1605 41 1 10.1615 -8.2998 1.0887 42 1 9.8503 -8.2147 -1.3558 43 1 11.3115 -7.3085 -0.8945 44 1 7.9343 -5.1868 -1.9512 45 1 7.8616 -6.9653 -1.9781 46 1 5.3259 -2.3958 0.0056 47 1 4.0915 -0.2703 -0.0031 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000780263004.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:44:51 Heat of formation + Delta-G solvation = 25.235565 kcal Electronic energy + Delta-G solvation = -25299.756559 eV Core-core repulsion = 21676.223886 eV Total energy + Delta-G solvation = -3623.532673 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.66748 -38.93241 -36.85308 -35.58008 -34.01542 -32.75030 -32.18406 -30.50524 -29.83157 -27.91554 -27.54045 -25.34244 -25.19071 -23.52987 -22.68864 -21.84823 -20.96144 -20.63871 -19.39647 -17.05647 -16.70104 -16.56765 -16.42694 -16.29845 -15.63194 -15.08505 -14.98915 -14.55763 -14.21311 -13.92205 -13.78132 -13.71216 -13.21309 -13.01905 -12.92709 -12.83230 -12.69541 -12.18145 -12.10411 -11.59409 -11.53923 -11.41661 -11.29445 -11.26475 -11.12111 -10.89637 -10.70375 -10.68060 -10.30348 -10.03745 -9.98459 -9.76080 -9.69494 -9.04854 -8.50953 -8.31297 -7.85330 -6.38731 -6.00006 -4.17599 1.62137 2.13534 2.83428 3.07669 3.26605 3.34998 3.39695 3.70915 4.11373 4.37341 4.41344 4.46684 4.55857 4.62996 4.71662 4.91915 5.05181 5.10505 5.18353 5.21862 5.30169 5.39930 5.45270 5.53851 5.55507 5.57544 5.67015 5.78395 5.82229 5.92878 6.02017 6.06605 6.16658 6.26028 6.40717 6.47256 6.63029 6.84999 6.96073 7.01162 7.17667 7.19941 7.26444 7.36157 7.55541 7.80933 8.13899 8.22611 8.43666 8.59861 8.91274 9.49456 10.95631 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.013407 B = 0.002489 C = 0.002187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2088.009781 B =11246.375282 C =12798.763297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.096 3.904 2 N -0.610 5.610 3 C 0.246 3.754 4 C -0.531 4.531 5 H 0.060 0.940 6 C 0.062 3.938 7 N -0.894 5.894 8 Si 0.896 3.104 9 H -0.272 1.272 10 H -0.284 1.284 11 H -0.282 1.282 12 C 0.252 3.748 13 C -0.225 4.225 14 C -0.048 4.048 15 C -0.138 4.138 16 C 0.097 3.903 17 N -0.248 5.248 18 N -0.665 5.665 19 C 0.158 3.842 20 H 0.089 0.911 21 C -0.131 4.131 22 C -0.151 4.151 23 C 0.056 3.944 24 O -0.379 6.379 25 C 0.047 3.953 26 C -0.035 4.035 27 C -0.193 4.193 28 H 0.037 0.963 29 H 0.068 0.932 30 H 0.056 0.944 31 H 0.031 0.969 32 H 0.038 0.962 33 H 0.264 0.736 34 H 0.117 0.883 35 H 0.112 0.888 36 H 0.098 0.902 37 H 0.370 0.630 38 H 0.073 0.927 39 H 0.065 0.935 40 H 0.076 0.924 41 H 0.077 0.923 42 H 0.049 0.951 43 H 0.095 0.905 44 H 0.099 0.901 45 H 0.047 0.953 46 H 0.121 0.879 47 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.273 -22.461 3.153 23.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.314 5.314 3 C 0.126 3.874 4 C -0.570 4.570 5 H 0.078 0.922 6 C -0.141 4.141 7 N -0.533 5.533 8 Si 0.724 3.276 9 H -0.197 1.197 10 H -0.210 1.210 11 H -0.208 1.208 12 C 0.142 3.858 13 C -0.249 4.249 14 C -0.069 4.069 15 C -0.143 4.143 16 C -0.113 4.113 17 N -0.054 5.054 18 N -0.403 5.403 19 C 0.052 3.948 20 H 0.108 0.892 21 C -0.169 4.169 22 C -0.190 4.190 23 C -0.021 4.021 24 O -0.297 6.297 25 C -0.032 4.032 26 C -0.056 4.056 27 C -0.216 4.216 28 H 0.056 0.944 29 H 0.087 0.913 30 H 0.075 0.925 31 H 0.049 0.951 32 H 0.056 0.944 33 H 0.073 0.927 34 H 0.135 0.865 35 H 0.130 0.870 36 H 0.116 0.884 37 H 0.207 0.793 38 H 0.092 0.908 39 H 0.084 0.916 40 H 0.095 0.905 41 H 0.095 0.905 42 H 0.067 0.933 43 H 0.113 0.887 44 H 0.117 0.883 45 H 0.065 0.935 46 H 0.139 0.861 47 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 6.414 -21.343 3.114 22.502 hybrid contribution -0.869 -0.825 -0.891 1.493 sum 5.546 -22.168 2.223 22.959 Atomic orbital electron populations 1.21517 0.81360 1.02091 0.99855 1.47182 1.04562 1.04775 1.74900 1.19344 0.92198 0.78659 0.97152 1.21594 1.36399 1.06440 0.92570 0.92151 1.24960 0.95375 0.96301 0.97434 1.69934 1.38304 1.14376 1.30720 0.86465 0.78111 0.78423 0.84635 1.19705 1.20980 1.20786 1.18108 0.91581 0.86006 0.90087 1.20452 0.99108 0.91155 1.14142 1.20680 0.92485 0.96856 0.96888 1.17888 0.92144 0.90441 1.13867 1.23916 0.90244 0.96730 1.00433 1.74284 1.09483 1.09045 1.12620 1.47794 1.03610 1.01915 1.86974 1.21093 0.78897 0.99065 0.95778 0.89243 1.21904 0.95826 0.97624 1.01594 1.22180 0.95345 1.03361 0.98069 1.22616 0.99240 0.88210 0.92007 1.87997 1.20282 1.42018 1.79381 1.23214 0.80403 1.02659 0.96907 1.20995 0.99384 0.90840 0.94411 1.20877 0.92514 0.98989 1.09203 0.94410 0.91330 0.92511 0.95071 0.94418 0.92666 0.86531 0.86959 0.88434 0.79301 0.90800 0.91612 0.90525 0.90484 0.93277 0.88736 0.88279 0.93481 0.86063 0.84795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.62 10.18 59.85 0.61 2.23 16 2 N -0.61 -12.78 2.99 -180.94 -0.54 -13.32 16 3 C 0.25 6.09 4.90 -5.19 -0.03 6.07 16 4 C -0.53 -14.38 9.39 -34.44 -0.32 -14.71 16 5 H 0.06 1.67 7.81 -52.48 -0.41 1.26 16 6 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 7 N -0.89 -25.58 13.29 55.43 0.74 -24.85 16 8 Si 0.90 21.34 29.54 -169.99 -5.02 16.32 16 9 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 10 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 11 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 12 C 0.25 4.99 6.56 -83.73 -0.55 4.44 16 13 C -0.23 -3.75 9.19 -39.45 -0.36 -4.11 16 14 C -0.05 -0.71 9.78 -39.19 -0.38 -1.09 16 15 C -0.14 -2.20 5.87 -105.02 -0.62 -2.82 16 16 C 0.10 1.34 10.75 -14.67 -0.16 1.18 16 17 N -0.25 -3.57 10.60 32.15 0.34 -3.23 16 18 N -0.66 -7.56 6.12 -4.77 -0.03 -7.59 16 19 C 0.16 1.63 3.33 -67.79 -0.23 1.41 16 20 H 0.09 1.09 8.14 -51.93 -0.42 0.66 16 21 C -0.13 -0.98 5.53 -26.55 -0.15 -1.13 16 22 C -0.15 -1.00 6.14 -26.59 -0.16 -1.17 16 23 C 0.06 0.42 6.84 37.21 0.25 0.68 16 24 O -0.38 -4.20 10.77 -35.23 -0.38 -4.58 16 25 C 0.05 0.50 6.45 37.20 0.24 0.74 16 26 C -0.04 -0.63 9.57 -39.19 -0.37 -1.01 16 27 C -0.19 -3.92 9.19 -39.44 -0.36 -4.28 16 28 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.07 1.19 8.07 -51.93 -0.42 0.77 16 30 H 0.06 0.84 6.18 -51.93 -0.32 0.52 16 31 H 0.03 0.81 8.07 -51.93 -0.42 0.39 16 32 H 0.04 0.99 6.19 -51.93 -0.32 0.67 16 33 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 34 H 0.12 1.71 6.12 -52.49 -0.32 1.39 16 35 H 0.11 1.30 8.06 -52.49 -0.42 0.88 16 36 H 0.10 1.08 8.02 -52.49 -0.42 0.66 16 37 H 0.37 3.49 8.61 -182.60 -1.57 1.92 16 38 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 39 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 42 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 43 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 44 H 0.10 1.21 8.14 -51.93 -0.42 0.79 16 45 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 46 H 0.12 2.13 7.55 -52.49 -0.40 1.73 16 47 H 0.13 3.00 6.12 -52.48 -0.32 2.68 16 LS Contribution 384.26 15.07 5.79 5.79 Total: -1.00 -29.96 384.26 -10.49 -40.45 By element: Atomic # 1 Polarization: 11.68 SS G_CDS: -8.71 Total: 2.97 kcal Atomic # 6 Polarization: -9.29 SS G_CDS: -2.68 Total: -11.97 kcal Atomic # 7 Polarization: -49.49 SS G_CDS: 0.51 Total: -48.99 kcal Atomic # 8 Polarization: -4.20 SS G_CDS: -0.38 Total: -4.58 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -29.96 -10.49 -40.45 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000780263004.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.690 kcal (2) G-P(sol) polarization free energy of solvation -29.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.455 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds