Wall clock time and date at job start Tue Mar 31 2020 11:44:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46498 * 119.99659 * 2 1 4 4 C 1.50701 * 109.47229 * 269.99991 * 3 2 1 5 5 H 1.08005 * 119.99849 * 0.02562 * 4 3 2 6 6 C 1.37874 * 120.00246 * 180.02562 * 4 3 2 7 7 N 1.31509 * 119.99940 * 0.02562 * 6 4 3 8 8 Si 1.86804 * 120.00358 * 180.02562 * 6 4 3 9 9 H 1.48504 * 109.46534 * 0.02562 * 8 6 4 10 10 H 1.48490 * 109.47208 * 120.00040 * 8 6 4 11 11 H 1.48497 * 109.47080 * 240.00217 * 8 6 4 12 12 C 1.39580 * 120.00052 * 180.02562 * 2 1 3 13 13 C 1.39054 * 119.92023 * 359.97438 * 12 2 1 14 14 C 1.37782 * 120.08212 * 179.97438 * 13 12 2 15 15 C 1.39734 * 119.92022 * 359.97438 * 14 13 12 16 16 C 1.47463 * 120.08512 * 180.02562 * 15 14 13 17 17 N 1.29750 * 120.00457 * 180.02562 * 16 15 14 18 18 N 1.40090 * 120.00191 * 179.97438 * 17 16 15 19 19 C 1.46506 * 120.00148 * 180.02562 * 18 17 16 20 20 H 1.09004 * 109.56961 * 30.14907 * 19 18 17 21 21 C 1.53175 * 109.52535 * 150.31138 * 19 18 17 22 22 C 1.53180 * 109.03606 * 176.88763 * 21 19 18 23 23 C 1.53098 * 109.16075 * 303.01560 * 22 21 19 24 24 O 1.42905 * 109.41155 * 57.61062 * 23 22 21 25 25 C 1.42905 * 114.09831 * 298.83847 * 24 23 22 26 26 C 1.39733 * 119.83722 * 0.27421 * 15 14 13 27 27 C 1.37786 * 119.91428 * 359.44941 * 26 15 14 28 28 H 1.08994 * 109.47063 * 269.99776 * 1 2 3 29 29 H 1.09004 * 109.47335 * 30.00062 * 1 2 3 30 30 H 1.08998 * 109.46918 * 149.99849 * 1 2 3 31 31 H 1.08997 * 109.47414 * 29.99633 * 3 2 1 32 32 H 1.09003 * 109.47186 * 150.00317 * 3 2 1 33 33 H 0.97000 * 120.00390 * 180.02562 * 7 6 4 34 34 H 1.07994 * 119.96182 * 0.02562 * 13 12 2 35 35 H 1.07998 * 120.04514 * 179.97438 * 14 13 12 36 36 H 1.08001 * 119.99412 * 359.97438 * 16 15 14 37 37 H 0.97001 * 120.00714 * 359.97438 * 18 17 16 38 38 H 1.09005 * 109.54265 * 296.75050 * 21 19 18 39 39 H 1.08996 * 109.54473 * 56.92556 * 21 19 18 40 40 H 1.08996 * 109.52502 * 62.92172 * 22 21 19 41 41 H 1.08998 * 109.52189 * 183.11552 * 22 21 19 42 42 H 1.09000 * 109.48092 * 297.63128 * 23 22 21 43 43 H 1.08993 * 109.47885 * 177.58982 * 23 22 21 44 44 H 1.08997 * 109.47832 * 181.14188 * 25 24 23 45 45 H 1.09000 * 109.48236 * 301.17758 * 25 24 23 46 46 H 1.07999 * 120.04110 * 179.70361 * 26 15 14 47 47 H 1.08007 * 119.95861 * 180.27284 * 27 26 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4486 1.7038 -1.4208 5 1 2.0974 1.0962 -2.2417 6 6 3.1268 2.8775 -1.6728 7 7 3.5549 3.6171 -0.6732 8 14 3.4375 3.4172 -3.4340 9 1 2.8585 2.4177 -4.3673 10 1 2.8005 4.7382 -3.6666 11 1 4.9000 3.5248 -3.6680 12 6 2.1630 -1.2088 -0.0005 13 6 1.4660 -2.4121 -0.0005 14 6 2.1516 -3.6072 -0.0016 15 6 3.5489 -3.6092 -0.0032 16 6 4.2863 -4.8862 -0.0049 17 7 5.5838 -4.8863 -0.0059 18 7 6.2843 -6.0995 -0.0070 19 6 7.7493 -6.0995 -0.0076 20 1 8.1147 -5.2117 0.5087 21 6 8.2615 -7.3541 0.7064 22 6 9.7912 -7.3823 0.6313 23 6 10.2234 -7.3319 -0.8365 24 8 9.6881 -6.1570 -1.4491 25 6 8.2603 -6.0986 -1.4508 26 6 4.2459 -2.3981 0.0020 27 6 3.5535 -1.2069 -0.0027 28 1 -0.3633 0.0000 1.0276 29 1 -0.3634 0.8900 -0.5139 30 1 -0.3633 -0.8900 -0.5139 31 1 1.6084 2.0284 0.5137 32 1 3.1499 1.1385 0.5138 33 1 4.0317 4.4431 -0.8504 34 1 0.3861 -2.4099 -0.0005 35 1 1.6097 -4.5414 -0.0012 36 1 3.7463 -5.8215 -0.0045 37 1 5.7994 -6.9396 -0.0067 38 1 7.9480 -7.3333 1.7502 39 1 7.8549 -8.2414 0.2212 40 1 10.1979 -6.5205 1.1605 41 1 10.1615 -8.2998 1.0887 42 1 9.8503 -8.2147 -1.3558 43 1 11.3115 -7.3085 -0.8945 44 1 7.9343 -5.1868 -1.9512 45 1 7.8616 -6.9653 -1.9781 46 1 5.3259 -2.3958 0.0056 47 1 4.0915 -0.2703 -0.0031 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000780263004.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:44:50 Heat of formation + Delta-G solvation = 7.755965 kcal Electronic energy + Delta-G solvation = -25300.514531 eV Core-core repulsion = 21676.223886 eV Total energy + Delta-G solvation = -3624.290645 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.44661 -40.30674 -38.00886 -36.91531 -35.03957 -34.59789 -33.04253 -31.91835 -31.04559 -29.64041 -28.65061 -26.75119 -26.04537 -24.98467 -23.73739 -23.20141 -22.25006 -21.47724 -20.66238 -18.63480 -18.23168 -17.74442 -17.55002 -17.08099 -16.79602 -16.46122 -15.89333 -15.83560 -15.70494 -15.32412 -15.06885 -14.60869 -14.40917 -14.25947 -14.05577 -14.00966 -13.88889 -13.58866 -13.17889 -13.14745 -13.00183 -12.70452 -12.57892 -12.54635 -12.43181 -12.16129 -12.15148 -11.87442 -11.72170 -11.47695 -11.37559 -10.83686 -10.81260 -10.63814 -10.40861 -9.68322 -8.98776 -8.30002 -7.63753 -6.36794 0.36574 0.75580 1.36001 1.38218 1.49977 1.86829 1.93262 2.34854 2.63429 2.98677 3.06839 3.26887 3.66580 3.86611 3.93289 3.99488 4.04339 4.13107 4.19141 4.26469 4.44792 4.45327 4.48752 4.60011 4.67624 4.73504 4.75371 4.80926 4.83597 4.88304 4.89228 4.99565 5.01799 5.08618 5.13447 5.19064 5.23191 5.33972 5.40166 5.59905 5.70570 5.75108 5.91623 6.07402 6.13651 6.16622 6.37441 6.49641 6.83170 6.93122 7.34929 7.64314 8.83791 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.013407 B = 0.002489 C = 0.002187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2088.009781 B =11246.375282 C =12798.763297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.095 3.905 2 N -0.627 5.627 3 C 0.263 3.737 4 C -0.539 4.539 5 H 0.050 0.950 6 C 0.011 3.989 7 N -0.927 5.927 8 Si 0.961 3.039 9 H -0.269 1.269 10 H -0.273 1.273 11 H -0.280 1.280 12 C 0.223 3.777 13 C -0.216 4.216 14 C -0.035 4.035 15 C -0.129 4.129 16 C 0.092 3.908 17 N -0.275 5.275 18 N -0.655 5.655 19 C 0.158 3.842 20 H 0.063 0.937 21 C -0.122 4.122 22 C -0.147 4.147 23 C 0.048 3.952 24 O -0.405 6.405 25 C 0.052 3.948 26 C -0.046 4.046 27 C -0.221 4.221 28 H 0.055 0.945 29 H 0.056 0.944 30 H 0.084 0.916 31 H 0.012 0.988 32 H 0.010 0.990 33 H 0.267 0.733 34 H 0.144 0.856 35 H 0.162 0.838 36 H 0.137 0.863 37 H 0.384 0.616 38 H 0.076 0.924 39 H 0.084 0.916 40 H 0.065 0.935 41 H 0.103 0.897 42 H 0.064 0.936 43 H 0.107 0.893 44 H 0.073 0.927 45 H 0.061 0.939 46 H 0.113 0.887 47 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.462 -26.401 2.623 26.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.333 5.333 3 C 0.142 3.858 4 C -0.577 4.577 5 H 0.069 0.931 6 C -0.188 4.188 7 N -0.567 5.567 8 Si 0.786 3.214 9 H -0.194 1.194 10 H -0.199 1.199 11 H -0.205 1.205 12 C 0.116 3.884 13 C -0.238 4.238 14 C -0.056 4.056 15 C -0.134 4.134 16 C -0.118 4.118 17 N -0.082 5.082 18 N -0.395 5.395 19 C 0.051 3.949 20 H 0.081 0.919 21 C -0.161 4.161 22 C -0.185 4.185 23 C -0.028 4.028 24 O -0.323 6.323 25 C -0.027 4.027 26 C -0.067 4.067 27 C -0.244 4.244 28 H 0.074 0.926 29 H 0.075 0.925 30 H 0.102 0.898 31 H 0.030 0.970 32 H 0.028 0.972 33 H 0.076 0.924 34 H 0.162 0.838 35 H 0.179 0.821 36 H 0.154 0.846 37 H 0.223 0.777 38 H 0.095 0.905 39 H 0.102 0.898 40 H 0.084 0.916 41 H 0.121 0.879 42 H 0.082 0.918 43 H 0.125 0.875 44 H 0.091 0.909 45 H 0.079 0.921 46 H 0.131 0.869 47 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 5.595 -25.330 2.590 26.070 hybrid contribution -0.474 0.218 -0.689 0.864 sum 5.120 -25.112 1.901 25.699 Atomic orbital electron populations 1.21671 0.79011 1.02840 1.01239 1.47017 1.05893 1.03704 1.76711 1.18810 0.91167 0.80375 0.95481 1.21802 1.36200 1.06393 0.93340 0.93131 1.25782 0.95153 0.96436 1.01434 1.70039 1.39071 1.14860 1.32742 0.85462 0.77936 0.78252 0.79773 1.19386 1.19855 1.20546 1.18365 0.91383 0.86822 0.91840 1.20778 1.00451 0.90170 1.12444 1.21149 0.91932 0.98102 0.94394 1.18202 0.93141 0.90451 1.11622 1.23923 0.90192 0.96883 1.00835 1.74202 1.10540 1.11425 1.12005 1.47749 1.03878 1.01521 1.86317 1.21143 0.78355 0.99694 0.95703 0.91881 1.21865 0.96359 0.96472 1.01401 1.22174 0.94633 1.04229 0.97512 1.22878 1.00008 0.87426 0.92467 1.87961 1.20247 1.44033 1.80078 1.23069 0.80694 1.01957 0.96968 1.20982 0.99164 0.91346 0.95250 1.20690 0.93394 0.98273 1.12028 0.92621 0.92503 0.89783 0.97003 0.97177 0.92426 0.83813 0.82089 0.84648 0.77676 0.90537 0.89783 0.91595 0.87853 0.91798 0.87453 0.90903 0.92113 0.86882 0.88777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 3.16 10.18 127.77 1.30 4.47 16 2 N -0.63 -27.09 2.99 -726.36 -2.17 -29.26 16 3 C 0.26 13.91 4.90 85.63 0.42 14.33 16 4 C -0.54 -30.52 9.39 25.60 0.24 -30.28 16 5 H 0.05 2.90 7.81 -2.91 -0.02 2.88 16 6 C 0.01 0.63 5.46 84.65 0.46 1.09 16 7 N -0.93 -55.22 13.29 21.45 0.28 -54.93 16 8 Si 0.96 44.86 29.54 68.60 2.03 46.89 16 9 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 10 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 11 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 12 C 0.22 8.99 6.56 38.30 0.25 9.24 16 13 C -0.22 -6.66 9.19 22.36 0.21 -6.45 16 14 C -0.03 -0.91 9.78 22.52 0.22 -0.69 16 15 C -0.13 -3.89 5.87 -20.12 -0.12 -4.01 16 16 C 0.09 2.29 10.75 87.43 0.94 3.23 16 17 N -0.27 -7.59 10.60 -52.18 -0.55 -8.14 16 18 N -0.66 -13.66 6.12 -169.00 -1.03 -14.70 16 19 C 0.16 3.10 3.33 45.08 0.15 3.25 16 20 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 21 C -0.12 -1.53 5.53 30.71 0.17 -1.36 16 22 C -0.15 -1.61 6.14 30.69 0.19 -1.42 16 23 C 0.05 0.63 6.84 72.01 0.49 1.12 16 24 O -0.40 -8.76 10.77 -148.98 -1.60 -10.36 16 25 C 0.05 1.08 6.45 72.01 0.46 1.55 16 26 C -0.05 -1.73 9.57 22.52 0.22 -1.52 16 27 C -0.22 -9.57 9.19 22.36 0.21 -9.37 16 28 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 29 H 0.06 1.99 8.07 -2.39 -0.02 1.97 16 30 H 0.08 2.29 6.18 -2.39 -0.01 2.27 16 31 H 0.01 0.66 8.07 -2.39 -0.02 0.64 16 32 H 0.01 0.59 6.19 -2.39 -0.01 0.58 16 33 H 0.27 14.92 8.31 -92.71 -0.77 14.15 16 34 H 0.14 3.62 6.12 -2.91 -0.02 3.60 16 35 H 0.16 2.70 8.06 -2.91 -0.02 2.68 16 36 H 0.14 2.31 8.02 -2.91 -0.02 2.29 16 37 H 0.38 6.02 8.61 -213.33 -1.84 4.18 16 38 H 0.08 0.95 8.14 -2.38 -0.02 0.94 16 39 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 40 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 41 H 0.10 0.64 8.14 -2.39 -0.02 0.62 16 42 H 0.06 0.65 8.14 -2.39 -0.02 0.64 16 43 H 0.11 1.10 8.14 -2.39 -0.02 1.08 16 44 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 45 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 46 H 0.11 4.27 7.55 -2.91 -0.02 4.25 16 47 H 0.09 4.73 6.12 -2.91 -0.02 4.71 16 Total: -1.00 -69.38 384.26 1.88 -67.49 By element: Atomic # 1 Polarization: 20.70 SS G_CDS: -0.88 Total: 19.83 kcal Atomic # 6 Polarization: -22.63 SS G_CDS: 5.81 Total: -16.82 kcal Atomic # 7 Polarization: -103.56 SS G_CDS: -3.47 Total: -107.03 kcal Atomic # 8 Polarization: -8.76 SS G_CDS: -1.60 Total: -10.36 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 2.03 Total: 46.89 kcal Total: -69.38 1.88 -67.49 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000780263004.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.250 kcal (2) G-P(sol) polarization free energy of solvation -69.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.494 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds