Wall clock time and date at job start Tue Mar 31 2020 11:44:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46495 * 119.99892 * 2 1 4 4 C 1.50698 * 109.47157 * 269.99803 * 3 2 1 5 5 H 1.08001 * 120.00027 * 0.02562 * 4 3 2 6 6 C 1.37875 * 120.00332 * 180.02562 * 4 3 2 7 7 N 1.31518 * 119.99854 * 0.02562 * 6 4 3 8 8 Si 1.86796 * 120.00256 * 180.02562 * 6 4 3 9 9 H 1.48505 * 109.47215 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47399 * 119.99704 * 8 6 4 11 11 H 1.48509 * 109.47254 * 239.99880 * 8 6 4 12 12 C 1.39587 * 119.99624 * 179.97438 * 2 1 3 13 13 C 1.39048 * 119.92194 * 359.97438 * 12 2 1 14 14 C 1.37789 * 120.08598 * 179.97438 * 13 12 2 15 15 C 1.39733 * 119.91427 * 0.02562 * 14 13 12 16 16 C 1.47459 * 120.07958 * 180.02562 * 15 14 13 17 17 N 1.29749 * 119.99875 * 180.02562 * 16 15 14 18 18 N 1.40097 * 120.00100 * 179.97438 * 17 16 15 19 19 C 1.46507 * 120.00350 * 179.97438 * 18 17 16 20 20 H 1.09001 * 109.51683 * 330.12342 * 19 18 17 21 21 C 1.53174 * 109.52355 * 209.99996 * 19 18 17 22 22 C 1.53176 * 109.03724 * 183.11024 * 21 19 18 23 23 C 1.53091 * 109.21206 * 56.94941 * 22 21 19 24 24 O 1.42913 * 109.41195 * 302.48956 * 23 22 21 25 25 C 1.42906 * 114.15073 * 61.06034 * 24 23 22 26 26 C 1.39738 * 119.83756 * 0.27373 * 15 14 13 27 27 C 1.37784 * 119.91622 * 359.44781 * 26 15 14 28 28 H 1.09006 * 109.46860 * 270.00399 * 1 2 3 29 29 H 1.08999 * 109.46803 * 29.99783 * 1 2 3 30 30 H 1.08995 * 109.47722 * 150.00363 * 1 2 3 31 31 H 1.08999 * 109.47454 * 30.00230 * 3 2 1 32 32 H 1.09006 * 109.47207 * 150.00265 * 3 2 1 33 33 H 0.96999 * 120.00223 * 180.02562 * 7 6 4 34 34 H 1.08008 * 119.96110 * 359.95348 * 13 12 2 35 35 H 1.07990 * 120.04318 * 180.02562 * 14 13 12 36 36 H 1.07996 * 120.00002 * 359.97438 * 16 15 14 37 37 H 0.97002 * 120.00120 * 359.97438 * 18 17 16 38 38 H 1.09004 * 109.54572 * 63.24618 * 21 19 18 39 39 H 1.08997 * 109.61789 * 303.02503 * 21 19 18 40 40 H 1.09002 * 109.52410 * 176.88783 * 22 21 19 41 41 H 1.09004 * 109.52533 * 297.01429 * 22 21 19 42 42 H 1.08998 * 109.48266 * 62.40567 * 23 22 21 43 43 H 1.08996 * 109.48151 * 182.44157 * 23 22 21 44 44 H 1.09004 * 109.47895 * 178.88906 * 25 24 23 45 45 H 1.08997 * 109.48267 * 58.85706 * 25 24 23 46 46 H 1.07999 * 120.03898 * 179.70721 * 26 15 14 47 47 H 1.07997 * 119.95818 * 180.27331 * 27 26 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7037 -1.4208 5 1 2.0975 1.0961 -2.2417 6 6 3.1269 2.8774 -1.6728 7 7 3.5551 3.6170 -0.6732 8 14 3.4376 3.4169 -3.4339 9 1 2.8597 2.4169 -4.3673 10 1 2.8006 4.7380 -3.6667 11 1 4.9002 3.5245 -3.6680 12 6 2.1629 -1.2089 0.0005 13 6 1.4659 -2.4121 0.0016 14 6 2.1514 -3.6074 0.0016 15 6 3.5487 -3.6094 0.0011 16 6 4.2860 -4.8865 0.0005 17 7 5.5834 -4.8865 0.0005 18 7 6.2839 -6.0998 0.0005 19 6 7.7490 -6.0999 0.0000 20 1 8.1130 -5.2092 -0.5122 21 6 8.2605 -7.3503 -0.7218 22 6 9.7903 -7.3790 -0.6482 23 6 10.2249 -7.3365 0.8191 24 8 9.6889 -6.1659 1.4395 25 6 8.2611 -6.1075 1.4426 26 6 4.2457 -2.3983 0.0063 27 6 3.5534 -1.2070 0.0005 28 1 -0.3633 0.0001 1.0277 29 1 -0.3633 0.8900 -0.5138 30 1 -0.3634 -0.8899 -0.5137 31 1 1.6085 2.0284 0.5139 32 1 3.1500 1.1384 0.5138 33 1 4.0319 4.4429 -0.8504 34 1 0.3859 -2.4098 0.0028 35 1 1.6094 -4.5414 0.0020 36 1 3.7459 -5.8217 0.0009 37 1 5.7989 -6.9398 0.0009 38 1 7.9462 -7.3234 -1.7652 39 1 7.8556 -8.2412 -0.2419 40 1 10.1601 -8.2938 -1.1113 41 1 10.1966 -6.5148 -1.1737 42 1 9.8532 -8.2222 1.3342 43 1 11.3132 -7.3130 0.8753 44 1 7.9356 -5.1986 1.9487 45 1 7.8628 -6.9772 1.9651 46 1 5.3257 -2.3960 0.0107 47 1 4.0914 -0.2706 0.0001 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000780263006.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:44:54 Heat of formation + Delta-G solvation = 25.220488 kcal Electronic energy + Delta-G solvation = -25286.552989 eV Core-core repulsion = 21663.019662 eV Total energy + Delta-G solvation = -3623.533327 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.66928 -38.93262 -36.85356 -35.58055 -34.01608 -32.75128 -32.18697 -30.50563 -29.83394 -27.91688 -27.54180 -25.34664 -25.19141 -23.53176 -22.69057 -21.84895 -20.96264 -20.63801 -19.39671 -17.05880 -16.70285 -16.56905 -16.42958 -16.30265 -15.63534 -15.08599 -14.99035 -14.55905 -14.21345 -13.92398 -13.79586 -13.69933 -13.22144 -13.02429 -12.92687 -12.82010 -12.70135 -12.16635 -12.12956 -11.56679 -11.51819 -11.47427 -11.27841 -11.26719 -11.12285 -10.89793 -10.71120 -10.68022 -10.30867 -10.04588 -9.97022 -9.78498 -9.68242 -9.05024 -8.51109 -8.31321 -7.85383 -6.38828 -6.00149 -4.17780 1.62106 2.13490 2.83323 3.07635 3.26125 3.34477 3.39193 3.69803 4.11308 4.37441 4.41032 4.46820 4.56000 4.62942 4.71427 4.91435 5.04960 5.10477 5.18107 5.21602 5.29878 5.39776 5.44980 5.53748 5.55467 5.57864 5.67134 5.78361 5.81778 5.92826 6.02009 6.06553 6.16604 6.26010 6.40688 6.47199 6.63008 6.84385 6.96027 7.01087 7.17594 7.19850 7.26408 7.36153 7.55503 7.80751 8.13784 8.22583 8.43637 8.59819 8.91100 9.49209 10.95441 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.013797 B = 0.002427 C = 0.002185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2028.976010 B =11535.091285 C =12809.023037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.096 3.904 2 N -0.610 5.610 3 C 0.246 3.754 4 C -0.531 4.531 5 H 0.060 0.940 6 C 0.061 3.939 7 N -0.894 5.894 8 Si 0.896 3.104 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.282 1.282 12 C 0.252 3.748 13 C -0.225 4.225 14 C -0.048 4.048 15 C -0.138 4.138 16 C 0.098 3.902 17 N -0.248 5.248 18 N -0.665 5.665 19 C 0.158 3.842 20 H 0.090 0.910 21 C -0.131 4.131 22 C -0.151 4.151 23 C 0.057 3.943 24 O -0.380 6.380 25 C 0.047 3.953 26 C -0.035 4.035 27 C -0.193 4.193 28 H 0.037 0.963 29 H 0.068 0.932 30 H 0.056 0.944 31 H 0.031 0.969 32 H 0.038 0.962 33 H 0.264 0.736 34 H 0.117 0.883 35 H 0.112 0.888 36 H 0.098 0.902 37 H 0.370 0.630 38 H 0.073 0.927 39 H 0.065 0.935 40 H 0.077 0.923 41 H 0.076 0.924 42 H 0.049 0.951 43 H 0.095 0.905 44 H 0.099 0.901 45 H 0.047 0.953 46 H 0.121 0.879 47 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.272 -22.459 2.588 23.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.314 5.314 3 C 0.126 3.874 4 C -0.570 4.570 5 H 0.078 0.922 6 C -0.141 4.141 7 N -0.533 5.533 8 Si 0.724 3.276 9 H -0.197 1.197 10 H -0.210 1.210 11 H -0.208 1.208 12 C 0.142 3.858 13 C -0.249 4.249 14 C -0.069 4.069 15 C -0.143 4.143 16 C -0.113 4.113 17 N -0.054 5.054 18 N -0.403 5.403 19 C 0.051 3.949 20 H 0.108 0.892 21 C -0.170 4.170 22 C -0.190 4.190 23 C -0.020 4.020 24 O -0.297 6.297 25 C -0.031 4.031 26 C -0.056 4.056 27 C -0.216 4.216 28 H 0.056 0.944 29 H 0.087 0.913 30 H 0.075 0.925 31 H 0.049 0.951 32 H 0.056 0.944 33 H 0.073 0.927 34 H 0.135 0.865 35 H 0.130 0.870 36 H 0.116 0.884 37 H 0.207 0.793 38 H 0.092 0.908 39 H 0.084 0.916 40 H 0.095 0.905 41 H 0.095 0.905 42 H 0.067 0.933 43 H 0.113 0.887 44 H 0.117 0.883 45 H 0.065 0.935 46 H 0.139 0.861 47 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 6.414 -21.341 2.718 22.449 hybrid contribution -0.868 -0.826 -1.170 1.675 sum 5.546 -22.167 1.548 22.902 Atomic orbital electron populations 1.21517 0.81361 1.02086 0.99858 1.47182 1.04561 1.04772 1.74906 1.19344 0.92204 0.78662 0.97145 1.21594 1.36391 1.06440 0.92575 0.92154 1.24963 0.95385 0.96305 0.97431 1.69938 1.38298 1.14375 1.30710 0.86466 0.78098 0.78424 0.84636 1.19717 1.20970 1.20803 1.18107 0.91580 0.86006 0.90087 1.20455 0.99108 0.91155 1.14141 1.20680 0.92485 0.96855 0.96886 1.17889 0.92145 0.90441 1.13864 1.23915 0.90246 0.96730 1.00431 1.74287 1.09485 1.09042 1.12619 1.47796 1.03610 1.01914 1.86974 1.21095 0.78899 0.99132 0.95731 0.89209 1.21904 0.95817 0.97641 1.01604 1.22180 0.95358 1.03396 0.98051 1.22614 0.99226 0.88260 0.91931 1.87988 1.20275 1.42449 1.79010 1.23204 0.80404 1.02583 0.96921 1.20996 0.99384 0.90839 0.94411 1.20875 0.92516 0.98988 1.09203 0.94410 0.91332 0.92513 0.95068 0.94409 0.92665 0.86531 0.86958 0.88431 0.79305 0.90780 0.91618 0.90485 0.90523 0.93290 0.88718 0.88314 0.93494 0.86063 0.84796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.62 10.18 59.85 0.61 2.23 16 2 N -0.61 -12.78 2.99 -180.94 -0.54 -13.32 16 3 C 0.25 6.09 4.91 -5.20 -0.03 6.07 16 4 C -0.53 -14.38 9.39 -34.44 -0.32 -14.70 16 5 H 0.06 1.67 7.81 -52.49 -0.41 1.26 16 6 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 7 N -0.89 -25.57 13.29 55.43 0.74 -24.84 16 8 Si 0.90 21.31 29.54 -169.99 -5.02 16.29 16 9 H -0.27 -6.46 7.11 56.52 0.40 -6.05 16 10 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 11 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 12 C 0.25 4.99 6.56 -83.73 -0.55 4.44 16 13 C -0.23 -3.75 9.19 -39.45 -0.36 -4.11 16 14 C -0.05 -0.71 9.78 -39.19 -0.38 -1.09 16 15 C -0.14 -2.20 5.87 -105.02 -0.62 -2.82 16 16 C 0.10 1.34 10.75 -14.68 -0.16 1.18 16 17 N -0.25 -3.57 10.60 32.15 0.34 -3.23 16 18 N -0.66 -7.56 6.12 -4.77 -0.03 -7.59 16 19 C 0.16 1.63 3.33 -67.79 -0.23 1.40 16 20 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 21 C -0.13 -0.99 5.53 -26.55 -0.15 -1.14 16 22 C -0.15 -1.01 6.13 -26.59 -0.16 -1.18 16 23 C 0.06 0.42 6.85 37.20 0.25 0.68 16 24 O -0.38 -4.14 10.76 -35.23 -0.38 -4.52 16 25 C 0.05 0.50 6.45 37.20 0.24 0.74 16 26 C -0.04 -0.63 9.57 -39.19 -0.37 -1.01 16 27 C -0.19 -3.92 9.19 -39.45 -0.36 -4.28 16 28 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.07 1.19 8.07 -51.93 -0.42 0.77 16 30 H 0.06 0.84 6.18 -51.93 -0.32 0.52 16 31 H 0.03 0.81 8.07 -51.93 -0.42 0.39 16 32 H 0.04 0.99 6.18 -51.93 -0.32 0.67 16 33 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 34 H 0.12 1.71 6.12 -52.48 -0.32 1.38 16 35 H 0.11 1.30 8.06 -52.49 -0.42 0.88 16 36 H 0.10 1.08 8.02 -52.49 -0.42 0.66 16 37 H 0.37 3.49 8.61 -182.60 -1.57 1.92 16 38 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 41 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 43 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 44 H 0.10 1.17 8.14 -51.93 -0.42 0.75 16 45 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 46 H 0.12 2.13 7.55 -52.49 -0.40 1.73 16 47 H 0.13 3.00 6.12 -52.49 -0.32 2.68 16 LS Contribution 384.27 15.07 5.79 5.79 Total: -1.00 -29.94 384.27 -10.49 -40.44 By element: Atomic # 1 Polarization: 11.68 SS G_CDS: -8.71 Total: 2.98 kcal Atomic # 6 Polarization: -9.32 SS G_CDS: -2.68 Total: -12.00 kcal Atomic # 7 Polarization: -49.48 SS G_CDS: 0.51 Total: -48.98 kcal Atomic # 8 Polarization: -4.14 SS G_CDS: -0.38 Total: -4.52 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -29.94 -10.49 -40.44 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000780263006.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.656 kcal (2) G-P(sol) polarization free energy of solvation -29.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.436 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds