Wall clock time and date at job start Tue Mar 31 2020 11:44:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46495 * 119.99892 * 2 1 4 4 C 1.50698 * 109.47157 * 269.99803 * 3 2 1 5 5 H 1.08001 * 120.00027 * 0.02562 * 4 3 2 6 6 C 1.37875 * 120.00332 * 180.02562 * 4 3 2 7 7 N 1.31518 * 119.99854 * 0.02562 * 6 4 3 8 8 Si 1.86796 * 120.00256 * 180.02562 * 6 4 3 9 9 H 1.48505 * 109.47215 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47399 * 119.99704 * 8 6 4 11 11 H 1.48509 * 109.47254 * 239.99880 * 8 6 4 12 12 C 1.39587 * 119.99624 * 179.97438 * 2 1 3 13 13 C 1.39048 * 119.92194 * 359.97438 * 12 2 1 14 14 C 1.37789 * 120.08598 * 179.97438 * 13 12 2 15 15 C 1.39733 * 119.91427 * 0.02562 * 14 13 12 16 16 C 1.47459 * 120.07958 * 180.02562 * 15 14 13 17 17 N 1.29749 * 119.99875 * 180.02562 * 16 15 14 18 18 N 1.40097 * 120.00100 * 179.97438 * 17 16 15 19 19 C 1.46507 * 120.00350 * 179.97438 * 18 17 16 20 20 H 1.09001 * 109.51683 * 330.12342 * 19 18 17 21 21 C 1.53174 * 109.52355 * 209.99996 * 19 18 17 22 22 C 1.53176 * 109.03724 * 183.11024 * 21 19 18 23 23 C 1.53091 * 109.21206 * 56.94941 * 22 21 19 24 24 O 1.42913 * 109.41195 * 302.48956 * 23 22 21 25 25 C 1.42906 * 114.15073 * 61.06034 * 24 23 22 26 26 C 1.39738 * 119.83756 * 0.27373 * 15 14 13 27 27 C 1.37784 * 119.91622 * 359.44781 * 26 15 14 28 28 H 1.09006 * 109.46860 * 270.00399 * 1 2 3 29 29 H 1.08999 * 109.46803 * 29.99783 * 1 2 3 30 30 H 1.08995 * 109.47722 * 150.00363 * 1 2 3 31 31 H 1.08999 * 109.47454 * 30.00230 * 3 2 1 32 32 H 1.09006 * 109.47207 * 150.00265 * 3 2 1 33 33 H 0.96999 * 120.00223 * 180.02562 * 7 6 4 34 34 H 1.08008 * 119.96110 * 359.95348 * 13 12 2 35 35 H 1.07990 * 120.04318 * 180.02562 * 14 13 12 36 36 H 1.07996 * 120.00002 * 359.97438 * 16 15 14 37 37 H 0.97002 * 120.00120 * 359.97438 * 18 17 16 38 38 H 1.09004 * 109.54572 * 63.24618 * 21 19 18 39 39 H 1.08997 * 109.61789 * 303.02503 * 21 19 18 40 40 H 1.09002 * 109.52410 * 176.88783 * 22 21 19 41 41 H 1.09004 * 109.52533 * 297.01429 * 22 21 19 42 42 H 1.08998 * 109.48266 * 62.40567 * 23 22 21 43 43 H 1.08996 * 109.48151 * 182.44157 * 23 22 21 44 44 H 1.09004 * 109.47895 * 178.88906 * 25 24 23 45 45 H 1.08997 * 109.48267 * 58.85706 * 25 24 23 46 46 H 1.07999 * 120.03898 * 179.70721 * 26 15 14 47 47 H 1.07997 * 119.95818 * 180.27331 * 27 26 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7037 -1.4208 5 1 2.0975 1.0961 -2.2417 6 6 3.1269 2.8774 -1.6728 7 7 3.5551 3.6170 -0.6732 8 14 3.4376 3.4169 -3.4339 9 1 2.8597 2.4169 -4.3673 10 1 2.8006 4.7380 -3.6667 11 1 4.9002 3.5245 -3.6680 12 6 2.1629 -1.2089 0.0005 13 6 1.4659 -2.4121 0.0016 14 6 2.1514 -3.6074 0.0016 15 6 3.5487 -3.6094 0.0011 16 6 4.2860 -4.8865 0.0005 17 7 5.5834 -4.8865 0.0005 18 7 6.2839 -6.0998 0.0005 19 6 7.7490 -6.0999 0.0000 20 1 8.1130 -5.2092 -0.5122 21 6 8.2605 -7.3503 -0.7218 22 6 9.7903 -7.3790 -0.6482 23 6 10.2249 -7.3365 0.8191 24 8 9.6889 -6.1659 1.4395 25 6 8.2611 -6.1075 1.4426 26 6 4.2457 -2.3983 0.0063 27 6 3.5534 -1.2070 0.0005 28 1 -0.3633 0.0001 1.0277 29 1 -0.3633 0.8900 -0.5138 30 1 -0.3634 -0.8899 -0.5137 31 1 1.6085 2.0284 0.5139 32 1 3.1500 1.1384 0.5138 33 1 4.0319 4.4429 -0.8504 34 1 0.3859 -2.4098 0.0028 35 1 1.6094 -4.5414 0.0020 36 1 3.7459 -5.8217 0.0009 37 1 5.7989 -6.9398 0.0009 38 1 7.9462 -7.3234 -1.7652 39 1 7.8556 -8.2412 -0.2419 40 1 10.1601 -8.2938 -1.1113 41 1 10.1966 -6.5148 -1.1737 42 1 9.8532 -8.2222 1.3342 43 1 11.3132 -7.3130 0.8753 44 1 7.9356 -5.1986 1.9487 45 1 7.8628 -6.9772 1.9651 46 1 5.3257 -2.3960 0.0107 47 1 4.0914 -0.2706 0.0001 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000780263006.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:44:53 Heat of formation + Delta-G solvation = 7.768439 kcal Electronic energy + Delta-G solvation = -25287.309766 eV Core-core repulsion = 21663.019662 eV Total energy + Delta-G solvation = -3624.290104 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.44365 -40.30559 -38.00832 -36.91460 -35.03882 -34.59713 -33.04423 -31.91853 -31.04602 -29.64048 -28.65031 -26.75111 -26.04385 -24.98480 -23.73842 -23.20202 -22.25092 -21.47652 -20.66232 -18.63488 -18.23215 -17.74549 -17.54938 -17.07630 -16.79532 -16.46023 -15.89520 -15.82993 -15.70621 -15.32555 -15.06930 -14.61093 -14.39950 -14.25489 -14.11692 -13.97079 -13.87945 -13.58086 -13.20114 -13.13900 -13.00934 -12.69992 -12.55273 -12.53387 -12.46368 -12.15992 -12.15341 -11.87541 -11.71949 -11.47146 -11.38147 -10.84160 -10.80584 -10.63665 -10.40986 -9.68333 -8.98738 -8.29972 -7.63776 -6.36826 0.36558 0.75545 1.35993 1.38107 1.49971 1.86908 1.93114 2.34840 2.63412 2.98620 3.06811 3.26869 3.66629 3.86648 3.93145 3.99544 4.04333 4.13139 4.19394 4.26481 4.44691 4.45268 4.48738 4.60144 4.67587 4.73477 4.75296 4.80853 4.83553 4.88323 4.89213 4.99479 5.01762 5.08581 5.13505 5.19051 5.23076 5.33876 5.40107 5.59883 5.70568 5.75078 5.91599 6.07401 6.13798 6.16606 6.37531 6.49653 6.83156 6.93096 7.34880 7.64274 8.83839 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.013797 B = 0.002427 C = 0.002185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2028.976010 B =11535.091285 C =12809.023037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.095 3.905 2 N -0.627 5.627 3 C 0.263 3.737 4 C -0.539 4.539 5 H 0.051 0.949 6 C 0.011 3.989 7 N -0.927 5.927 8 Si 0.961 3.039 9 H -0.269 1.269 10 H -0.273 1.273 11 H -0.280 1.280 12 C 0.223 3.777 13 C -0.216 4.216 14 C -0.035 4.035 15 C -0.129 4.129 16 C 0.092 3.908 17 N -0.275 5.275 18 N -0.655 5.655 19 C 0.157 3.843 20 H 0.062 0.938 21 C -0.123 4.123 22 C -0.148 4.148 23 C 0.049 3.951 24 O -0.405 6.405 25 C 0.053 3.947 26 C -0.046 4.046 27 C -0.221 4.221 28 H 0.055 0.945 29 H 0.056 0.944 30 H 0.084 0.916 31 H 0.012 0.988 32 H 0.010 0.990 33 H 0.267 0.733 34 H 0.144 0.856 35 H 0.162 0.838 36 H 0.137 0.863 37 H 0.384 0.616 38 H 0.074 0.926 39 H 0.084 0.916 40 H 0.103 0.897 41 H 0.064 0.936 42 H 0.064 0.936 43 H 0.108 0.892 44 H 0.074 0.926 45 H 0.061 0.939 46 H 0.113 0.887 47 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.460 -26.392 1.629 26.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.333 5.333 3 C 0.142 3.858 4 C -0.577 4.577 5 H 0.069 0.931 6 C -0.188 4.188 7 N -0.567 5.567 8 Si 0.786 3.214 9 H -0.194 1.194 10 H -0.199 1.199 11 H -0.205 1.205 12 C 0.116 3.884 13 C -0.238 4.238 14 C -0.056 4.056 15 C -0.134 4.134 16 C -0.118 4.118 17 N -0.082 5.082 18 N -0.395 5.395 19 C 0.051 3.949 20 H 0.080 0.920 21 C -0.161 4.161 22 C -0.186 4.186 23 C -0.027 4.027 24 O -0.323 6.323 25 C -0.026 4.026 26 C -0.067 4.067 27 C -0.244 4.244 28 H 0.074 0.926 29 H 0.075 0.925 30 H 0.102 0.898 31 H 0.030 0.970 32 H 0.028 0.972 33 H 0.076 0.924 34 H 0.162 0.838 35 H 0.179 0.821 36 H 0.154 0.846 37 H 0.223 0.777 38 H 0.093 0.907 39 H 0.103 0.897 40 H 0.121 0.879 41 H 0.083 0.917 42 H 0.083 0.917 43 H 0.126 0.874 44 H 0.093 0.907 45 H 0.080 0.920 46 H 0.131 0.869 47 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 5.593 -25.322 1.760 25.992 hybrid contribution -0.475 0.216 -0.816 0.968 sum 5.118 -25.106 0.945 25.640 Atomic orbital electron populations 1.21671 0.79013 1.02843 1.01234 1.47017 1.05892 1.03703 1.76717 1.18810 0.91163 0.80374 0.95491 1.21802 1.36200 1.06402 0.93335 0.93114 1.25791 0.95154 0.96434 1.01464 1.70045 1.39068 1.14860 1.32754 0.85456 0.77934 0.78249 0.79736 1.19372 1.19858 1.20540 1.18365 0.91383 0.86821 0.91842 1.20780 1.00451 0.90169 1.12443 1.21150 0.91933 0.98099 0.94391 1.18202 0.93141 0.90450 1.11621 1.23922 0.90193 0.96883 1.00836 1.74205 1.10541 1.11419 1.12005 1.47750 1.03877 1.01519 1.86327 1.21146 0.78362 0.99636 0.95805 0.91961 1.21866 0.96376 0.96599 1.01307 1.22176 0.94627 1.04189 0.97611 1.22871 1.00004 0.87549 0.92281 1.87954 1.20272 1.44410 1.79683 1.23060 0.80654 1.02033 0.96832 1.20983 0.99164 0.91345 0.95248 1.20688 0.93396 0.98273 1.12029 0.92638 0.92500 0.89775 0.97018 0.97185 0.92428 0.83812 0.82088 0.84647 0.77681 0.90694 0.89724 0.87902 0.91681 0.91749 0.87430 0.90750 0.92038 0.86881 0.88779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 3.17 10.18 127.77 1.30 4.47 16 2 N -0.63 -27.09 2.99 -726.37 -2.17 -29.26 16 3 C 0.26 13.91 4.91 85.63 0.42 14.33 16 4 C -0.54 -30.50 9.39 25.60 0.24 -30.26 16 5 H 0.05 2.91 7.81 -2.91 -0.02 2.88 16 6 C 0.01 0.60 5.46 84.65 0.46 1.07 16 7 N -0.93 -55.21 13.29 21.45 0.28 -54.93 16 8 Si 0.96 44.76 29.54 68.60 2.03 46.79 16 9 H -0.27 -12.28 7.11 99.48 0.71 -11.58 16 10 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 11 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 12 C 0.22 8.99 6.56 38.30 0.25 9.24 16 13 C -0.22 -6.66 9.19 22.36 0.21 -6.45 16 14 C -0.03 -0.91 9.78 22.53 0.22 -0.69 16 15 C -0.13 -3.89 5.87 -20.12 -0.12 -4.01 16 16 C 0.09 2.29 10.75 87.43 0.94 3.23 16 17 N -0.27 -7.59 10.60 -52.19 -0.55 -8.14 16 18 N -0.66 -13.67 6.12 -169.01 -1.03 -14.71 16 19 C 0.16 3.10 3.33 45.08 0.15 3.25 16 20 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 21 C -0.12 -1.57 5.53 30.71 0.17 -1.40 16 22 C -0.15 -1.65 6.13 30.68 0.19 -1.46 16 23 C 0.05 0.63 6.85 72.01 0.49 1.12 16 24 O -0.40 -8.60 10.76 -148.98 -1.60 -10.21 16 25 C 0.05 1.08 6.45 72.01 0.46 1.54 16 26 C -0.05 -1.73 9.57 22.53 0.22 -1.52 16 27 C -0.22 -9.57 9.19 22.36 0.21 -9.37 16 28 H 0.06 1.62 8.14 -2.38 -0.02 1.60 16 29 H 0.06 1.99 8.07 -2.39 -0.02 1.97 16 30 H 0.08 2.29 6.18 -2.39 -0.01 2.28 16 31 H 0.01 0.65 8.07 -2.39 -0.02 0.63 16 32 H 0.01 0.59 6.18 -2.38 -0.01 0.57 16 33 H 0.27 14.92 8.31 -92.71 -0.77 14.15 16 34 H 0.14 3.62 6.12 -2.91 -0.02 3.60 16 35 H 0.16 2.70 8.06 -2.92 -0.02 2.68 16 36 H 0.14 2.31 8.02 -2.91 -0.02 2.29 16 37 H 0.38 6.02 8.61 -213.32 -1.84 4.19 16 38 H 0.07 0.98 8.14 -2.38 -0.02 0.96 16 39 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 40 H 0.10 0.66 8.14 -2.39 -0.02 0.64 16 41 H 0.06 0.88 8.14 -2.38 -0.02 0.87 16 42 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 43 H 0.11 1.09 8.14 -2.39 -0.02 1.07 16 44 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 45 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 46 H 0.11 4.27 7.55 -2.91 -0.02 4.25 16 47 H 0.09 4.73 6.12 -2.91 -0.02 4.71 16 Total: -1.00 -69.30 384.27 1.88 -67.42 By element: Atomic # 1 Polarization: 20.81 SS G_CDS: -0.88 Total: 19.94 kcal Atomic # 6 Polarization: -22.70 SS G_CDS: 5.81 Total: -16.90 kcal Atomic # 7 Polarization: -103.57 SS G_CDS: -3.47 Total: -107.04 kcal Atomic # 8 Polarization: -8.60 SS G_CDS: -1.60 Total: -10.21 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 2.03 Total: 46.79 kcal Total: -69.30 1.88 -67.42 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000780263006.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.187 kcal (2) G-P(sol) polarization free energy of solvation -69.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.419 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds