Wall clock time and date at job start Tue Mar 31 2020 11:28:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46507 * 119.99485 * 2 1 4 4 C 1.39666 * 120.00386 * 180.02562 * 2 1 3 5 5 C 1.38914 * 120.07521 * 359.97438 * 4 2 1 6 6 C 1.38101 * 119.92719 * 180.02562 * 5 4 2 7 7 C 1.38292 * 120.07190 * 0.02562 * 6 5 4 8 8 C 1.50698 * 119.92309 * 180.02562 * 7 6 5 9 9 N 1.46501 * 109.47679 * 89.99428 * 8 7 6 10 10 C 1.34777 * 120.00072 * 270.00463 * 9 8 7 11 11 O 1.21590 * 119.99987 * 4.93370 * 10 9 8 12 12 N 1.34775 * 119.99606 * 184.94062 * 10 9 8 13 13 C 1.46502 * 119.99658 * 185.03432 * 12 10 9 14 14 C 1.50698 * 109.47222 * 179.97438 * 13 12 10 15 15 H 1.08002 * 119.99803 * 0.02562 * 14 13 12 16 16 C 1.37878 * 120.00205 * 179.97438 * 14 13 12 17 17 N 1.31518 * 119.99887 * 0.02562 * 16 14 13 18 18 Si 1.86795 * 120.00092 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.47360 * 60.00188 * 18 16 14 20 20 H 1.48500 * 109.47225 * 180.02562 * 18 16 14 21 21 H 1.48509 * 109.47119 * 300.00067 * 18 16 14 22 22 C 1.46502 * 119.99611 * 89.99660 * 9 8 7 23 23 C 1.52998 * 117.50072 * 2.58008 * 22 9 8 24 24 C 1.52994 * 117.50118 * 293.95263 * 22 9 8 25 25 C 1.38281 * 120.15239 * 0.27176 * 7 6 5 26 26 C 1.38103 * 120.07450 * 359.45103 * 25 7 6 27 27 H 1.09003 * 109.46251 * 269.99449 * 1 2 3 28 28 H 1.09000 * 109.47278 * 29.99462 * 1 2 3 29 29 H 1.09001 * 109.46815 * 149.99725 * 1 2 3 30 30 H 1.08994 * 109.47357 * 270.00193 * 3 2 1 31 31 H 1.09003 * 109.47212 * 30.00775 * 3 2 1 32 32 H 1.09002 * 109.46601 * 150.00493 * 3 2 1 33 33 H 1.07999 * 120.03255 * 0.02562 * 5 4 2 34 34 H 1.07998 * 119.96637 * 179.97438 * 6 5 4 35 35 H 1.09000 * 109.47256 * 210.00183 * 8 7 6 36 36 H 1.09000 * 109.47099 * 329.99280 * 8 7 6 37 37 H 0.97001 * 120.00504 * 5.02706 * 12 10 9 38 38 H 1.09001 * 109.46861 * 299.99539 * 13 12 10 39 39 H 1.08997 * 109.47263 * 59.99107 * 13 12 10 40 40 H 0.97000 * 119.99849 * 179.97438 * 17 16 14 41 41 H 1.09007 * 115.54585 * 148.28127 * 22 9 8 42 42 H 1.09003 * 117.49701 * 359.97438 * 23 22 9 43 43 H 1.09003 * 117.49912 * 145.02082 * 23 22 9 44 44 H 1.08998 * 117.50078 * 214.97839 * 24 22 9 45 45 H 1.08997 * 117.50125 * 359.97438 * 24 22 9 46 46 H 1.08000 * 119.96266 * 179.70969 * 25 7 6 47 47 H 1.08002 * 120.04111 * 180.27558 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2689 0.0000 4 6 2.1635 -1.2095 -0.0005 5 6 1.4705 -2.4135 -0.0005 6 6 2.1642 -3.6076 -0.0005 7 6 3.5471 -3.6057 0.0000 8 6 4.3007 -4.9108 -0.0006 9 7 4.5454 -5.3329 -1.3820 10 6 3.6471 -6.1107 -2.0181 11 8 2.5932 -6.3880 -1.4788 12 7 3.9171 -6.5811 -3.2519 13 6 2.8983 -7.3336 -3.9880 14 6 3.4478 -7.7424 -5.3304 15 1 4.4554 -7.4694 -5.6073 16 6 2.6647 -8.4659 -6.2046 17 7 1.4379 -8.7989 -5.8672 18 14 3.3462 -8.9733 -7.8682 19 1 4.5465 -9.8254 -7.6725 20 1 2.3134 -9.7360 -8.6145 21 1 3.7201 -7.7612 -8.6405 22 6 5.7664 -4.9094 -2.0719 23 6 6.7749 -4.0778 -1.2767 24 6 5.9295 -3.4172 -2.3676 25 6 4.2401 -2.4091 0.0062 26 6 3.5527 -1.2113 0.0004 27 1 -0.3632 -0.0001 1.0277 28 1 -0.3634 0.8900 -0.5137 29 1 -0.3633 -0.8900 -0.5139 30 1 2.3791 1.5836 -1.0276 31 1 1.6084 2.0284 0.5140 32 1 3.1499 1.1385 0.5138 33 1 0.3906 -2.4156 -0.0005 34 1 1.6262 -4.5440 -0.0001 35 1 5.2529 -4.7807 0.5137 36 1 3.7115 -5.6707 0.5126 37 1 4.7860 -6.4213 -3.6525 38 1 2.6236 -8.2233 -3.4213 39 1 2.0174 -6.7080 -4.1316 40 1 0.8869 -9.3076 -6.4824 41 1 6.1608 -5.6138 -2.8044 42 1 6.5297 -3.8454 -0.2404 43 1 7.8331 -4.2349 -1.4861 44 1 6.4315 -3.1397 -3.2944 45 1 5.1281 -2.7505 -2.0492 46 1 5.3200 -2.4111 0.0113 47 1 4.0944 -0.2770 0.0008 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787356364.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:28:01 Heat of formation + Delta-G solvation = 47.150485 kcal Electronic energy + Delta-G solvation = -26697.243770 eV Core-core repulsion = 23074.661399 eV Total energy + Delta-G solvation = -3622.582371 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.18029 -39.15395 -37.25650 -36.20617 -34.18472 -33.02479 -32.28615 -31.07983 -30.42809 -28.29734 -27.44070 -26.07011 -23.85157 -22.64151 -22.36257 -22.28457 -21.84411 -20.41653 -18.86726 -18.11747 -17.50578 -16.23148 -15.82838 -15.69574 -15.46946 -15.21310 -14.92696 -14.64897 -14.35210 -14.06783 -13.85467 -13.71028 -13.42899 -13.13612 -12.84643 -12.71558 -12.27062 -12.16935 -12.07613 -11.99902 -11.92623 -11.72661 -11.40298 -11.20573 -10.93991 -10.84523 -10.73571 -10.59284 -10.50272 -10.22046 -9.75370 -9.32698 -9.23107 -8.73587 -8.66352 -8.20240 -7.61634 -7.24285 -6.10344 -4.16417 1.58305 1.65950 3.02130 3.23730 3.28891 3.33663 3.35879 3.73366 4.07021 4.12308 4.35202 4.66404 4.78719 4.80881 4.93624 4.94779 4.99689 5.02065 5.10673 5.15653 5.22755 5.25701 5.37058 5.40543 5.44205 5.47310 5.55118 5.68099 5.76857 5.82961 5.86288 5.99137 6.02873 6.19326 6.25325 6.36167 6.53336 6.82037 6.95731 6.98310 7.17918 7.23238 7.47886 7.58864 7.62789 7.64706 7.93555 8.08752 8.82344 8.99370 9.39962 9.54928 10.99933 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.014210 B = 0.003176 C = 0.002905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1969.911996 B = 8813.586745 C = 9636.450358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.642 5.642 3 C 0.096 3.904 4 C 0.212 3.788 5 C -0.199 4.199 6 C -0.039 4.039 7 C -0.157 4.157 8 C 0.177 3.823 9 N -0.605 5.605 10 C 0.702 3.298 11 O -0.594 6.594 12 N -0.728 5.728 13 C 0.268 3.732 14 C -0.540 4.540 15 H 0.061 0.939 16 C 0.064 3.936 17 N -0.886 5.886 18 Si 0.903 3.097 19 H -0.276 1.276 20 H -0.286 1.286 21 H -0.276 1.276 22 C 0.081 3.919 23 C -0.189 4.189 24 C -0.200 4.200 25 C -0.065 4.065 26 C -0.205 4.205 27 H 0.046 0.954 28 H 0.063 0.937 29 H 0.070 0.930 30 H 0.045 0.955 31 H 0.063 0.937 32 H 0.067 0.933 33 H 0.119 0.881 34 H 0.131 0.869 35 H 0.078 0.922 36 H 0.088 0.912 37 H 0.385 0.615 38 H 0.025 0.975 39 H 0.022 0.978 40 H 0.266 0.734 41 H 0.124 0.876 42 H 0.100 0.900 43 H 0.100 0.900 44 H 0.096 0.904 45 H 0.105 0.895 46 H 0.120 0.880 47 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.784 18.719 13.321 23.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.355 5.355 3 C -0.047 4.047 4 C 0.111 3.889 5 C -0.221 4.221 6 C -0.059 4.059 7 C -0.161 4.161 8 C 0.054 3.946 9 N -0.341 5.341 10 C 0.403 3.597 11 O -0.473 6.473 12 N -0.381 5.381 13 C 0.147 3.853 14 C -0.579 4.579 15 H 0.079 0.921 16 C -0.140 4.140 17 N -0.524 5.524 18 Si 0.730 3.270 19 H -0.201 1.201 20 H -0.211 1.211 21 H -0.201 1.201 22 C -0.025 4.025 23 C -0.227 4.227 24 C -0.239 4.239 25 C -0.084 4.084 26 C -0.227 4.227 27 H 0.064 0.936 28 H 0.082 0.918 29 H 0.089 0.911 30 H 0.064 0.936 31 H 0.081 0.919 32 H 0.086 0.914 33 H 0.137 0.863 34 H 0.149 0.851 35 H 0.096 0.904 36 H 0.106 0.894 37 H 0.219 0.781 38 H 0.043 0.957 39 H 0.040 0.960 40 H 0.075 0.925 41 H 0.141 0.859 42 H 0.118 0.882 43 H 0.119 0.881 44 H 0.115 0.885 45 H 0.123 0.877 46 H 0.138 0.862 47 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 5.670 18.515 13.606 23.666 hybrid contribution 0.671 -0.014 -1.294 1.458 sum 6.342 18.501 12.312 23.111 Atomic orbital electron populations 1.21608 0.79694 1.02676 1.00936 1.46272 1.04881 1.03145 1.81187 1.21578 0.97165 0.85037 1.00962 1.17842 0.91250 0.85487 0.94325 1.20703 0.99559 0.91087 1.10798 1.21045 0.93762 0.97752 0.93308 1.20048 0.94170 0.95058 1.06782 1.20057 0.98962 0.93318 0.82269 1.46693 1.20302 1.53381 1.13706 1.16001 0.83038 0.78756 0.81899 1.90835 1.24752 1.64466 1.67264 1.45797 1.18851 1.58041 1.15371 1.18946 0.86098 0.90658 0.89641 1.21189 1.00185 1.36048 1.00444 0.92125 1.24932 0.94758 0.95575 0.98717 1.69972 1.07829 1.37958 1.36592 0.86494 0.78606 0.78675 0.83219 1.20105 1.21108 1.20120 1.21543 0.88180 0.93270 0.99532 1.23348 0.96951 1.04606 0.97789 1.23612 1.03098 0.97298 0.99852 1.20831 0.99165 0.91491 0.96926 1.20546 0.91971 0.98261 1.11949 0.93595 0.91817 0.91126 0.93628 0.91869 0.91403 0.86286 0.85097 0.90418 0.89356 0.78111 0.95727 0.95954 0.92474 0.85890 0.88160 0.88132 0.88527 0.87665 0.86208 0.86466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.81 10.19 59.85 0.61 1.42 16 2 N -0.64 -6.79 3.41 -187.54 -0.64 -7.43 16 3 C 0.10 0.74 10.19 59.85 0.61 1.35 16 4 C 0.21 2.72 6.55 -83.79 -0.55 2.17 16 5 C -0.20 -2.82 9.21 -39.38 -0.36 -3.18 16 6 C -0.04 -0.62 9.56 -39.61 -0.38 -1.00 16 7 C -0.16 -2.24 5.27 -104.59 -0.55 -2.80 16 8 C 0.18 2.53 5.05 -5.19 -0.03 2.50 16 9 N -0.60 -9.92 2.79 -173.17 -0.48 -10.40 16 10 C 0.70 15.11 8.26 -86.92 -0.72 14.39 16 11 O -0.59 -14.79 15.17 5.29 0.08 -14.71 16 12 N -0.73 -16.33 5.44 -66.41 -0.36 -16.69 16 13 C 0.27 7.35 5.43 -5.19 -0.03 7.32 16 14 C -0.54 -15.01 9.28 -34.44 -0.32 -15.32 16 15 H 0.06 1.58 7.60 -52.49 -0.40 1.18 16 16 C 0.06 1.80 5.46 -17.82 -0.10 1.70 16 17 N -0.89 -26.54 13.29 55.43 0.74 -25.80 16 18 Si 0.90 21.18 29.54 -169.99 -5.02 16.16 16 19 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 20 H -0.29 -6.66 7.11 56.52 0.40 -6.25 16 21 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 22 C 0.08 1.07 5.98 -67.93 -0.41 0.66 16 23 C -0.19 -1.86 9.21 -26.73 -0.25 -2.11 16 24 C -0.20 -2.33 9.74 -26.73 -0.26 -2.59 16 25 C -0.07 -0.79 7.00 -39.62 -0.28 -1.07 16 26 C -0.21 -2.46 9.21 -39.38 -0.36 -2.82 16 27 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.06 0.44 8.07 -51.93 -0.42 0.02 16 29 H 0.07 0.66 6.20 -51.93 -0.32 0.33 16 30 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.06 0.38 8.07 -51.93 -0.42 -0.04 16 32 H 0.07 0.49 6.20 -51.93 -0.32 0.17 16 33 H 0.12 1.53 6.14 -52.49 -0.32 1.21 16 34 H 0.13 2.28 7.37 -52.49 -0.39 1.89 16 35 H 0.08 0.88 5.94 -51.93 -0.31 0.57 16 36 H 0.09 1.38 7.44 -51.93 -0.39 1.00 16 37 H 0.39 7.58 6.14 -40.82 -0.25 7.33 16 38 H 0.02 0.75 8.14 -51.93 -0.42 0.32 16 39 H 0.02 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 41 H 0.12 1.58 6.60 -51.93 -0.34 1.24 16 42 H 0.10 0.92 4.57 -51.93 -0.24 0.68 16 43 H 0.10 0.82 8.14 -51.93 -0.42 0.39 16 44 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 45 H 0.11 1.38 5.38 -51.93 -0.28 1.10 16 46 H 0.12 1.22 5.46 -52.49 -0.29 0.94 16 47 H 0.12 1.16 6.14 -52.49 -0.32 0.84 16 LS Contribution 371.00 15.07 5.59 5.59 Total: -1.00 -33.60 371.00 -10.13 -43.73 By element: Atomic # 1 Polarization: 15.59 SS G_CDS: -6.67 Total: 8.91 kcal Atomic # 6 Polarization: 4.01 SS G_CDS: -3.36 Total: 0.65 kcal Atomic # 7 Polarization: -59.58 SS G_CDS: -0.75 Total: -60.33 kcal Atomic # 8 Polarization: -14.79 SS G_CDS: 0.08 Total: -14.71 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -33.60 -10.13 -43.73 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787356364.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.880 kcal (2) G-P(sol) polarization free energy of solvation -33.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.730 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds