Wall clock time and date at job start Tue Mar 31 2020 11:28:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46507 * 119.99485 * 2 1 4 4 C 1.39666 * 120.00386 * 180.02562 * 2 1 3 5 5 C 1.38914 * 120.07521 * 359.97438 * 4 2 1 6 6 C 1.38101 * 119.92719 * 180.02562 * 5 4 2 7 7 C 1.38292 * 120.07190 * 0.02562 * 6 5 4 8 8 C 1.50698 * 119.92309 * 180.02562 * 7 6 5 9 9 N 1.46501 * 109.47679 * 89.99428 * 8 7 6 10 10 C 1.34777 * 120.00072 * 270.00463 * 9 8 7 11 11 O 1.21590 * 119.99987 * 4.93370 * 10 9 8 12 12 N 1.34775 * 119.99606 * 184.94062 * 10 9 8 13 13 C 1.46502 * 119.99658 * 185.03432 * 12 10 9 14 14 C 1.50698 * 109.47222 * 179.97438 * 13 12 10 15 15 H 1.08002 * 119.99803 * 0.02562 * 14 13 12 16 16 C 1.37878 * 120.00205 * 179.97438 * 14 13 12 17 17 N 1.31518 * 119.99887 * 0.02562 * 16 14 13 18 18 Si 1.86795 * 120.00092 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.47360 * 60.00188 * 18 16 14 20 20 H 1.48500 * 109.47225 * 180.02562 * 18 16 14 21 21 H 1.48509 * 109.47119 * 300.00067 * 18 16 14 22 22 C 1.46502 * 119.99611 * 89.99660 * 9 8 7 23 23 C 1.52998 * 117.50072 * 2.58008 * 22 9 8 24 24 C 1.52994 * 117.50118 * 293.95263 * 22 9 8 25 25 C 1.38281 * 120.15239 * 0.27176 * 7 6 5 26 26 C 1.38103 * 120.07450 * 359.45103 * 25 7 6 27 27 H 1.09003 * 109.46251 * 269.99449 * 1 2 3 28 28 H 1.09000 * 109.47278 * 29.99462 * 1 2 3 29 29 H 1.09001 * 109.46815 * 149.99725 * 1 2 3 30 30 H 1.08994 * 109.47357 * 270.00193 * 3 2 1 31 31 H 1.09003 * 109.47212 * 30.00775 * 3 2 1 32 32 H 1.09002 * 109.46601 * 150.00493 * 3 2 1 33 33 H 1.07999 * 120.03255 * 0.02562 * 5 4 2 34 34 H 1.07998 * 119.96637 * 179.97438 * 6 5 4 35 35 H 1.09000 * 109.47256 * 210.00183 * 8 7 6 36 36 H 1.09000 * 109.47099 * 329.99280 * 8 7 6 37 37 H 0.97001 * 120.00504 * 5.02706 * 12 10 9 38 38 H 1.09001 * 109.46861 * 299.99539 * 13 12 10 39 39 H 1.08997 * 109.47263 * 59.99107 * 13 12 10 40 40 H 0.97000 * 119.99849 * 179.97438 * 17 16 14 41 41 H 1.09007 * 115.54585 * 148.28127 * 22 9 8 42 42 H 1.09003 * 117.49701 * 359.97438 * 23 22 9 43 43 H 1.09003 * 117.49912 * 145.02082 * 23 22 9 44 44 H 1.08998 * 117.50078 * 214.97839 * 24 22 9 45 45 H 1.08997 * 117.50125 * 359.97438 * 24 22 9 46 46 H 1.08000 * 119.96266 * 179.70969 * 25 7 6 47 47 H 1.08002 * 120.04111 * 180.27558 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2689 0.0000 4 6 2.1635 -1.2095 -0.0005 5 6 1.4705 -2.4135 -0.0005 6 6 2.1642 -3.6076 -0.0005 7 6 3.5471 -3.6057 0.0000 8 6 4.3007 -4.9108 -0.0006 9 7 4.5454 -5.3329 -1.3820 10 6 3.6471 -6.1107 -2.0181 11 8 2.5932 -6.3880 -1.4788 12 7 3.9171 -6.5811 -3.2519 13 6 2.8983 -7.3336 -3.9880 14 6 3.4478 -7.7424 -5.3304 15 1 4.4554 -7.4694 -5.6073 16 6 2.6647 -8.4659 -6.2046 17 7 1.4379 -8.7989 -5.8672 18 14 3.3462 -8.9733 -7.8682 19 1 4.5465 -9.8254 -7.6725 20 1 2.3134 -9.7360 -8.6145 21 1 3.7201 -7.7612 -8.6405 22 6 5.7664 -4.9094 -2.0719 23 6 6.7749 -4.0778 -1.2767 24 6 5.9295 -3.4172 -2.3676 25 6 4.2401 -2.4091 0.0062 26 6 3.5527 -1.2113 0.0004 27 1 -0.3632 -0.0001 1.0277 28 1 -0.3634 0.8900 -0.5137 29 1 -0.3633 -0.8900 -0.5139 30 1 2.3791 1.5836 -1.0276 31 1 1.6084 2.0284 0.5140 32 1 3.1499 1.1385 0.5138 33 1 0.3906 -2.4156 -0.0005 34 1 1.6262 -4.5440 -0.0001 35 1 5.2529 -4.7807 0.5137 36 1 3.7115 -5.6707 0.5126 37 1 4.7860 -6.4213 -3.6525 38 1 2.6236 -8.2233 -3.4213 39 1 2.0174 -6.7080 -4.1316 40 1 0.8869 -9.3076 -6.4824 41 1 6.1608 -5.6138 -2.8044 42 1 6.5297 -3.8454 -0.2404 43 1 7.8331 -4.2349 -1.4861 44 1 6.4315 -3.1397 -3.2944 45 1 5.1281 -2.7505 -2.0492 46 1 5.3200 -2.4111 0.0113 47 1 4.0944 -0.2770 0.0008 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787356364.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:28:00 Heat of formation + Delta-G solvation = 26.190824 kcal Electronic energy + Delta-G solvation = -26698.152649 eV Core-core repulsion = 23074.661399 eV Total energy + Delta-G solvation = -3623.491250 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.47551 -40.34976 -38.54621 -37.13017 -36.13746 -34.37020 -34.25736 -32.07983 -31.62086 -29.26975 -29.00985 -27.37730 -25.03922 -24.27797 -23.47428 -23.31681 -23.02775 -21.52990 -20.49700 -19.52236 -18.44692 -18.09922 -17.38303 -16.74567 -16.67695 -16.50840 -16.06359 -15.93956 -15.75987 -15.34813 -15.01685 -14.95148 -14.70507 -14.41444 -14.09367 -14.00742 -13.70615 -13.45031 -13.09460 -12.97901 -12.93778 -12.88462 -12.81083 -12.71285 -12.61414 -12.23307 -12.13386 -11.77397 -11.60763 -11.53094 -11.47082 -11.00851 -10.78091 -10.59429 -9.91770 -9.78111 -9.21945 -8.27742 -8.15753 -6.44408 0.55001 0.57585 1.42556 1.47648 1.55557 1.86181 2.23716 2.25331 2.38926 2.97438 2.98409 3.06967 3.21390 3.86203 3.91355 4.02097 4.05233 4.07520 4.15374 4.20937 4.25951 4.45229 4.46972 4.51942 4.66596 4.71410 4.79652 4.83861 4.86138 4.89076 4.94742 4.95417 5.08988 5.14196 5.20625 5.27978 5.32247 5.37756 5.48649 5.49755 5.61254 5.77077 5.84209 5.87485 5.96408 6.19373 6.35919 6.55185 6.66917 7.23662 7.26738 7.75996 8.84716 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.014210 B = 0.003176 C = 0.002905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1969.911996 B = 8813.586745 C = 9636.450358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.646 5.646 3 C 0.090 3.910 4 C 0.209 3.791 5 C -0.218 4.218 6 C -0.066 4.066 7 C -0.171 4.171 8 C 0.176 3.824 9 N -0.592 5.592 10 C 0.694 3.306 11 O -0.639 6.639 12 N -0.724 5.724 13 C 0.289 3.711 14 C -0.555 4.555 15 H 0.082 0.918 16 C 0.004 3.996 17 N -0.931 5.931 18 Si 0.987 3.013 19 H -0.261 1.261 20 H -0.284 1.284 21 H -0.262 1.262 22 C 0.039 3.961 23 C -0.150 4.150 24 C -0.197 4.197 25 C -0.053 4.053 26 C -0.204 4.204 27 H 0.054 0.946 28 H 0.085 0.915 29 H 0.055 0.945 30 H 0.049 0.951 31 H 0.083 0.917 32 H 0.077 0.923 33 H 0.118 0.882 34 H 0.095 0.905 35 H 0.118 0.882 36 H 0.062 0.938 37 H 0.401 0.599 38 H -0.016 1.016 39 H -0.020 1.020 40 H 0.269 0.731 41 H 0.125 0.875 42 H 0.112 0.888 43 H 0.129 0.871 44 H 0.111 0.889 45 H 0.092 0.908 46 H 0.149 0.851 47 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.449 21.460 12.764 27.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.357 5.357 3 C -0.052 4.052 4 C 0.106 3.894 5 C -0.240 4.240 6 C -0.085 4.085 7 C -0.175 4.175 8 C 0.054 3.946 9 N -0.326 5.326 10 C 0.396 3.604 11 O -0.522 6.522 12 N -0.378 5.378 13 C 0.166 3.834 14 C -0.593 4.593 15 H 0.100 0.900 16 C -0.196 4.196 17 N -0.570 5.570 18 Si 0.809 3.191 19 H -0.185 1.185 20 H -0.210 1.210 21 H -0.186 1.186 22 C -0.065 4.065 23 C -0.187 4.187 24 C -0.236 4.236 25 C -0.072 4.072 26 C -0.226 4.226 27 H 0.073 0.927 28 H 0.103 0.897 29 H 0.074 0.926 30 H 0.068 0.932 31 H 0.102 0.898 32 H 0.095 0.905 33 H 0.136 0.864 34 H 0.113 0.887 35 H 0.135 0.865 36 H 0.081 0.919 37 H 0.237 0.763 38 H 0.002 0.998 39 H -0.002 1.002 40 H 0.078 0.922 41 H 0.142 0.858 42 H 0.130 0.870 43 H 0.147 0.853 44 H 0.129 0.871 45 H 0.111 0.889 46 H 0.167 0.833 47 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 9.401 21.335 13.083 26.735 hybrid contribution -0.521 -0.740 -1.024 1.366 sum 8.880 20.595 12.060 25.465 Atomic orbital electron populations 1.21727 0.79014 1.03034 1.01635 1.46570 1.05674 1.03320 1.80174 1.21795 0.97737 0.84017 1.01686 1.18000 0.92025 0.85820 0.93535 1.20738 0.99777 0.91519 1.11993 1.20926 0.94926 0.96994 0.95681 1.20020 0.93429 0.95882 1.08153 1.20223 1.00555 0.92784 0.81062 1.46611 1.20228 1.51628 1.14151 1.16237 0.83384 0.79234 0.81560 1.90805 1.27050 1.66112 1.68193 1.45399 1.18535 1.58126 1.15774 1.18342 0.86188 0.88673 0.90209 1.21549 1.01171 1.36236 1.00298 0.90030 1.26083 0.94839 0.95171 1.03477 1.70149 1.09639 1.38732 1.38467 0.85188 0.78044 0.78717 0.77137 1.18542 1.20992 1.18621 1.21876 0.88197 0.94670 1.01794 1.23485 0.97432 1.00179 0.97654 1.23611 1.03318 0.95092 1.01537 1.21049 1.00401 0.90444 0.95258 1.20901 0.91624 0.99380 1.10717 0.92711 0.89663 0.92578 0.93198 0.89795 0.90481 0.86378 0.88683 0.86451 0.91947 0.76288 0.99842 1.00234 0.92246 0.85768 0.86973 0.85251 0.87097 0.88950 0.83342 0.83558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.46 10.19 127.77 1.30 2.76 16 2 N -0.65 -12.60 3.41 -747.24 -2.55 -15.14 16 3 C 0.09 1.11 10.19 127.77 1.30 2.42 16 4 C 0.21 5.21 6.55 38.22 0.25 5.46 16 5 C -0.22 -6.53 9.21 22.40 0.21 -6.32 16 6 C -0.07 -2.24 9.56 22.25 0.21 -2.03 16 7 C -0.17 -4.95 5.27 -19.84 -0.10 -5.05 16 8 C 0.18 5.06 5.05 85.63 0.43 5.50 16 9 N -0.59 -19.62 2.79 -820.05 -2.28 -21.91 16 10 C 0.69 31.69 8.26 179.06 1.48 33.17 16 11 O -0.64 -34.75 15.17 -4.00 -0.06 -34.81 16 12 N -0.72 -34.02 5.44 -482.30 -2.62 -36.64 16 13 C 0.29 16.92 5.43 85.63 0.47 17.39 16 14 C -0.55 -31.45 9.28 25.60 0.24 -31.22 16 15 H 0.08 4.18 7.60 -2.91 -0.02 4.16 16 16 C 0.00 0.22 5.46 84.65 0.46 0.68 16 17 N -0.93 -57.84 13.29 21.45 0.28 -57.56 16 18 Si 0.99 43.31 29.54 68.60 2.03 45.34 16 19 H -0.26 -10.80 7.11 99.48 0.71 -10.10 16 20 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 21 H -0.26 -10.85 7.11 99.48 0.71 -10.15 16 22 C 0.04 0.95 5.98 44.99 0.27 1.22 16 23 C -0.15 -2.27 9.21 30.59 0.28 -1.99 16 24 C -0.20 -3.96 9.74 30.59 0.30 -3.66 16 25 C -0.05 -1.17 7.00 22.25 0.16 -1.01 16 26 C -0.20 -4.39 9.21 22.40 0.21 -4.18 16 27 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 28 H 0.08 1.02 8.07 -2.39 -0.02 1.01 16 29 H 0.06 1.08 6.20 -2.39 -0.01 1.07 16 30 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 31 H 0.08 0.71 8.07 -2.39 -0.02 0.69 16 32 H 0.08 0.82 6.20 -2.39 -0.01 0.80 16 33 H 0.12 3.37 6.14 -2.91 -0.02 3.35 16 34 H 0.09 3.83 7.37 -2.91 -0.02 3.80 16 35 H 0.12 2.38 5.94 -2.39 -0.01 2.37 16 36 H 0.06 2.11 7.44 -2.39 -0.02 2.09 16 37 H 0.40 15.99 6.14 -92.71 -0.57 15.42 16 38 H -0.02 -1.07 8.14 -2.39 -0.02 -1.09 16 39 H -0.02 -1.34 8.14 -2.39 -0.02 -1.36 16 40 H 0.27 15.56 8.31 -92.71 -0.77 14.79 16 41 H 0.12 2.99 6.60 -2.38 -0.02 2.97 16 42 H 0.11 1.46 4.57 -2.39 -0.01 1.45 16 43 H 0.13 1.33 8.14 -2.39 -0.02 1.31 16 44 H 0.11 1.93 8.14 -2.39 -0.02 1.91 16 45 H 0.09 2.15 5.38 -2.39 -0.01 2.14 16 46 H 0.15 2.37 5.46 -2.91 -0.02 2.35 16 47 H 0.15 2.27 6.14 -2.91 -0.02 2.26 16 Total: -1.00 -79.30 371.00 2.68 -76.61 By element: Atomic # 1 Polarization: 30.55 SS G_CDS: 0.43 Total: 30.98 kcal Atomic # 6 Polarization: 5.68 SS G_CDS: 7.46 Total: 13.13 kcal Atomic # 7 Polarization: -124.08 SS G_CDS: -7.17 Total: -131.25 kcal Atomic # 8 Polarization: -34.75 SS G_CDS: -0.06 Total: -34.81 kcal Atomic # 14 Polarization: 43.31 SS G_CDS: 2.03 Total: 45.34 kcal Total: -79.30 2.68 -76.61 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787356364.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.804 kcal (2) G-P(sol) polarization free energy of solvation -79.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.613 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds