Wall clock time and date at job start Tue Mar 31 2020 11:27:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46890 * 1 3 3 C 1.46902 * 111.00279 * 2 1 4 4 C 1.50698 * 109.47083 * 293.95811 * 3 2 1 5 5 C 1.38231 * 119.99958 * 269.72272 * 4 3 2 6 6 C 1.38232 * 120.00103 * 179.79450 * 5 4 3 7 7 C 1.38237 * 120.00010 * 0.43783 * 6 5 4 8 8 C 1.38239 * 119.99677 * 359.81568 * 7 6 5 9 9 C 1.38233 * 120.00079 * 359.97438 * 8 7 6 10 10 C 1.46897 * 111.00286 * 123.95998 * 2 1 3 11 11 H 1.08999 * 110.91800 * 292.14657 * 10 2 1 12 12 C 1.55162 * 111.00538 * 56.04442 * 10 2 1 13 13 C 1.54317 * 102.94461 * 153.57865 * 12 10 2 14 14 N 1.47018 * 107.27092 * 337.80697 * 13 12 10 15 15 C 1.34783 * 125.65064 * 178.90390 * 14 13 12 16 16 O 1.21590 * 119.99935 * 180.02562 * 15 14 13 17 17 N 1.34779 * 119.99768 * 0.02562 * 15 14 13 18 18 C 1.46499 * 119.99872 * 180.02562 * 17 15 14 19 19 C 1.50701 * 109.46992 * 179.97438 * 18 17 15 20 20 H 1.07998 * 120.00129 * 0.02562 * 19 18 17 21 21 C 1.37880 * 119.99861 * 179.97438 * 19 18 17 22 22 N 1.31510 * 119.99913 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 119.99734 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.47094 * 90.00289 * 23 21 19 25 25 H 1.48505 * 109.47195 * 210.00171 * 23 21 19 26 26 H 1.48493 * 109.47449 * 330.00136 * 23 21 19 27 27 C 1.47422 * 108.70554 * 359.17052 * 14 13 12 28 28 H 1.08996 * 109.47138 * 296.04122 * 1 2 3 29 29 H 1.09002 * 109.47636 * 56.04241 * 1 2 3 30 30 H 1.09003 * 109.47670 * 176.04120 * 1 2 3 31 31 H 1.09002 * 109.46564 * 53.95639 * 3 2 1 32 32 H 1.08997 * 109.47181 * 173.95190 * 3 2 1 33 33 H 1.08005 * 120.00004 * 359.97438 * 5 4 3 34 34 H 1.07995 * 120.00311 * 180.27545 * 6 5 4 35 35 H 1.07998 * 120.00303 * 179.84001 * 7 6 5 36 36 H 1.07996 * 119.99876 * 180.02562 * 8 7 6 37 37 H 1.08003 * 119.99738 * 179.97438 * 9 8 7 38 38 H 1.08998 * 110.71713 * 35.21025 * 12 10 2 39 39 H 1.09001 * 110.86837 * 272.01029 * 12 10 2 40 40 H 1.08996 * 109.88501 * 218.39122 * 13 12 10 41 41 H 1.09002 * 109.88560 * 97.22051 * 13 12 10 42 42 H 0.97000 * 119.99708 * 359.97438 * 17 15 14 43 43 H 1.09002 * 109.47391 * 59.99686 * 18 17 15 44 44 H 1.09001 * 109.46813 * 299.99742 * 18 17 15 45 45 H 0.97002 * 119.99768 * 179.97438 * 22 21 19 46 46 H 1.08999 * 110.37060 * 142.74117 * 27 14 13 47 47 H 1.09004 * 110.36232 * 265.06689 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6368 2.0472 -1.2984 5 6 2.4964 1.9698 -2.3782 6 6 2.1655 2.5860 -3.5705 7 6 0.9793 3.2873 -3.6802 8 6 0.1222 3.3691 -2.5987 9 6 0.4511 2.7491 -1.4078 10 6 1.9954 -0.7661 1.1375 11 1 1.7766 -0.2637 2.0797 12 6 1.4394 -2.2147 1.1375 13 6 2.5362 -3.0059 1.8808 14 7 3.7813 -2.2315 1.7739 15 6 4.9686 -2.5749 2.3117 16 8 5.9362 -1.8546 2.1591 17 7 5.0831 -3.7168 3.0185 18 6 6.3734 -4.0898 3.6035 19 6 6.2327 -5.3984 4.3375 20 1 5.2777 -5.9021 4.3651 21 6 7.3233 -5.9532 4.9729 22 7 8.4863 -5.3401 4.9389 23 14 7.1490 -7.5757 5.8821 24 1 7.4334 -8.6975 4.9516 25 1 8.1103 -7.6150 7.0133 26 1 5.7648 -7.7043 6.4042 27 6 3.5149 -1.0140 0.9866 28 1 -0.3633 0.4511 0.9233 29 1 -0.3634 0.5740 -0.8524 30 1 -0.3634 -1.0252 -0.0709 31 1 1.5611 1.9273 0.8310 32 1 3.0797 1.3444 0.1083 33 1 3.4251 1.4254 -2.2912 34 1 2.8349 2.5219 -4.4155 35 1 0.7220 3.7709 -4.6110 36 1 -0.8047 3.9166 -2.6845 37 1 -0.2184 2.8134 -0.5627 38 1 1.3221 -2.5826 0.1182 39 1 0.4935 -2.2675 1.6764 40 1 2.6668 -3.9836 1.4171 41 1 2.2621 -3.1241 2.9291 42 1 4.3111 -4.2912 3.1405 43 1 6.6939 -3.3154 4.3004 44 1 7.1147 -4.1950 2.8113 45 1 9.2535 -5.7303 5.3863 46 1 4.0787 -0.1718 1.3877 47 1 3.7681 -1.1767 -0.0610 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787370097.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:27:53 Heat of formation + Delta-G solvation = -15.920595 kcal Electronic energy + Delta-G solvation = -25849.263721 eV Core-core repulsion = 22223.946383 eV Total energy + Delta-G solvation = -3625.317338 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.35439 -40.37919 -39.17853 -36.87219 -36.16218 -34.37354 -32.93001 -31.78050 -31.23598 -30.22895 -28.86523 -27.79149 -25.49855 -24.44702 -23.72482 -23.36699 -21.95784 -21.14629 -20.96113 -19.57006 -18.07513 -17.83210 -17.57118 -17.04183 -16.58217 -16.32047 -16.17608 -16.16715 -15.82597 -15.16748 -15.00284 -14.71262 -14.37805 -14.26393 -14.18377 -14.07562 -13.85924 -13.75154 -13.47243 -13.31680 -12.96576 -12.89332 -12.70754 -12.61838 -12.48436 -12.21545 -11.94394 -11.88897 -11.76323 -11.70304 -11.47984 -11.26540 -10.80875 -10.07789 -9.76490 -9.69377 -9.42883 -9.30050 -8.28439 -6.45354 0.45026 0.55183 1.43229 1.46791 1.57148 1.66879 2.16761 2.38583 2.73519 3.06247 3.16293 3.20309 3.51175 3.66108 3.86147 3.95107 4.08432 4.20476 4.25677 4.28908 4.34492 4.36922 4.47692 4.60651 4.66537 4.69194 4.73368 4.78831 4.83146 4.87775 4.94397 5.04682 5.11431 5.14540 5.18193 5.20721 5.24960 5.32045 5.48147 5.60224 5.67276 5.69973 5.73816 5.83672 5.99729 6.06329 6.16969 6.20105 6.65785 7.15137 7.24522 7.66036 8.84000 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.032591 B = 0.002127 C = 0.002038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 858.924555 B =13159.831612 C =13736.230226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.530 5.530 3 C 0.090 3.910 4 C -0.085 4.085 5 C -0.117 4.117 6 C -0.131 4.131 7 C -0.128 4.128 8 C -0.127 4.127 9 C -0.118 4.118 10 C 0.081 3.919 11 H 0.062 0.938 12 C -0.104 4.104 13 C 0.093 3.907 14 N -0.639 5.639 15 C 0.707 3.293 16 O -0.649 6.649 17 N -0.719 5.719 18 C 0.286 3.714 19 C -0.555 4.555 20 H 0.084 0.916 21 C 0.003 3.997 22 N -0.930 5.930 23 Si 0.989 3.011 24 H -0.270 1.270 25 H -0.283 1.283 26 H -0.255 1.255 27 C 0.134 3.866 28 H 0.035 0.965 29 H 0.074 0.926 30 H 0.082 0.918 31 H 0.052 0.948 32 H 0.072 0.928 33 H 0.116 0.884 34 H 0.132 0.868 35 H 0.139 0.861 36 H 0.142 0.858 37 H 0.132 0.868 38 H 0.093 0.907 39 H 0.110 0.890 40 H 0.075 0.925 41 H 0.076 0.924 42 H 0.403 0.597 43 H -0.015 1.015 44 H -0.015 1.015 45 H 0.269 0.731 46 H 0.053 0.947 47 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.901 13.705 -14.072 31.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.254 5.254 3 C -0.037 4.037 4 C -0.085 4.085 5 C -0.136 4.136 6 C -0.149 4.149 7 C -0.146 4.146 8 C -0.144 4.144 9 C -0.137 4.137 10 C -0.029 4.029 11 H 0.080 0.920 12 C -0.142 4.142 13 C -0.029 4.029 14 N -0.378 5.378 15 C 0.408 3.592 16 O -0.533 6.533 17 N -0.373 5.373 18 C 0.163 3.837 19 C -0.593 4.593 20 H 0.102 0.898 21 C -0.197 4.197 22 N -0.569 5.569 23 Si 0.811 3.189 24 H -0.196 1.196 25 H -0.209 1.209 26 H -0.178 1.178 27 C 0.011 3.989 28 H 0.053 0.947 29 H 0.092 0.908 30 H 0.101 0.899 31 H 0.070 0.930 32 H 0.091 0.909 33 H 0.134 0.866 34 H 0.150 0.850 35 H 0.157 0.843 36 H 0.159 0.841 37 H 0.150 0.850 38 H 0.112 0.888 39 H 0.129 0.871 40 H 0.094 0.906 41 H 0.094 0.906 42 H 0.239 0.761 43 H 0.003 0.997 44 H 0.003 0.997 45 H 0.078 0.922 46 H 0.071 0.929 47 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -23.785 13.933 -14.491 31.142 hybrid contribution 0.407 -0.364 1.206 1.323 sum -23.378 13.569 -13.285 30.119 Atomic orbital electron populations 1.22527 0.85421 1.03498 1.01204 1.61921 1.09431 1.12598 1.41470 1.21080 1.00331 0.88108 0.94177 1.19753 0.95368 0.98154 0.95263 1.21188 0.99779 0.99263 0.93331 1.21394 0.97799 0.97918 0.97788 1.21459 0.94344 0.99110 0.99664 1.21420 1.00400 0.99656 0.92965 1.21238 0.96150 0.97617 0.98669 1.22603 0.92293 0.95393 0.92564 0.92016 1.22662 0.97566 0.91716 1.02270 1.22276 0.82904 0.95954 1.01801 1.47462 1.08127 1.25662 1.56505 1.15825 0.82344 0.82019 0.78967 1.90829 1.39073 1.55398 1.67950 1.45297 1.14465 1.22235 1.55297 1.18434 0.79773 0.94498 0.91033 1.21572 0.97628 1.05842 1.34209 0.89823 1.26102 0.94299 1.02331 0.96972 1.70150 1.01623 1.41132 1.43974 0.85103 0.78764 0.77414 0.77582 1.19567 1.20901 1.17830 1.21945 0.95963 0.85948 0.95085 0.94655 0.90752 0.89885 0.93029 0.90913 0.86595 0.85002 0.84302 0.84064 0.85010 0.88835 0.87117 0.90638 0.90583 0.76126 0.99670 0.99742 0.92208 0.92857 0.91585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 8.94 127.69 1.14 1.40 16 2 N -0.53 -8.99 4.65 -893.90 -4.16 -13.15 16 3 C 0.09 1.59 5.03 85.56 0.43 2.02 16 4 C -0.08 -1.47 4.89 -19.87 -0.10 -1.57 16 5 C -0.12 -2.16 9.70 22.27 0.22 -1.95 16 6 C -0.13 -2.07 10.05 22.27 0.22 -1.85 16 7 C -0.13 -1.70 10.05 22.27 0.22 -1.48 16 8 C -0.13 -1.60 10.05 22.27 0.22 -1.38 16 9 C -0.12 -1.67 7.90 22.27 0.18 -1.49 16 10 C 0.08 1.54 2.70 46.23 0.12 1.66 16 11 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 12 C -0.10 -1.60 5.10 31.78 0.16 -1.44 16 13 C 0.09 2.07 6.15 86.73 0.53 2.60 16 14 N -0.64 -21.10 3.33 -830.20 -2.76 -23.86 16 15 C 0.71 32.22 8.49 179.05 1.52 33.74 16 16 O -0.65 -36.13 16.60 -4.00 -0.07 -36.19 16 17 N -0.72 -33.15 5.51 -482.28 -2.66 -35.80 16 18 C 0.29 16.45 5.43 85.63 0.46 16.92 16 19 C -0.55 -30.90 9.28 25.60 0.24 -30.67 16 20 H 0.08 4.20 7.60 -2.91 -0.02 4.18 16 21 C 0.00 0.14 5.46 84.66 0.46 0.61 16 22 N -0.93 -57.03 13.29 21.45 0.28 -56.74 16 23 Si 0.99 42.72 29.54 68.60 2.03 44.74 16 24 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 25 H -0.28 -12.11 7.11 99.48 0.71 -11.41 16 26 H -0.25 -10.18 7.11 99.48 0.71 -9.47 16 27 C 0.13 3.78 5.60 86.78 0.49 4.27 16 28 H 0.03 0.38 8.14 -2.39 -0.02 0.36 16 29 H 0.07 0.93 5.89 -2.39 -0.01 0.91 16 30 H 0.08 0.85 6.99 -2.39 -0.02 0.83 16 31 H 0.05 0.82 8.06 -2.39 -0.02 0.80 16 32 H 0.07 1.48 6.90 -2.39 -0.02 1.46 16 33 H 0.12 2.22 8.06 -2.91 -0.02 2.19 16 34 H 0.13 1.66 8.06 -2.91 -0.02 1.64 16 35 H 0.14 1.22 8.06 -2.91 -0.02 1.20 16 36 H 0.14 1.10 8.06 -2.91 -0.02 1.08 16 37 H 0.13 1.41 7.98 -2.91 -0.02 1.39 16 38 H 0.09 1.38 8.09 -2.39 -0.02 1.36 16 39 H 0.11 1.09 8.10 -2.39 -0.02 1.07 16 40 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 41 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 42 H 0.40 15.53 7.31 -92.71 -0.68 14.85 16 43 H -0.01 -0.95 8.14 -2.39 -0.02 -0.96 16 44 H -0.02 -0.99 8.14 -2.39 -0.02 -1.01 16 45 H 0.27 15.34 8.31 -92.71 -0.77 14.57 16 46 H 0.05 1.70 7.72 -2.39 -0.02 1.68 16 47 H 0.07 1.93 8.14 -2.38 -0.02 1.91 16 Total: -1.00 -76.75 381.21 -0.53 -77.28 By element: Atomic # 1 Polarization: 22.05 SS G_CDS: 0.27 Total: 22.33 kcal Atomic # 6 Polarization: 14.87 SS G_CDS: 6.53 Total: 21.40 kcal Atomic # 7 Polarization: -120.26 SS G_CDS: -9.29 Total: -129.56 kcal Atomic # 8 Polarization: -36.13 SS G_CDS: -0.07 Total: -36.19 kcal Atomic # 14 Polarization: 42.72 SS G_CDS: 2.03 Total: 44.74 kcal Total: -76.75 -0.53 -77.28 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787370097.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.362 kcal (2) G-P(sol) polarization free energy of solvation -76.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.283 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds