Wall clock time and date at job start Tue Mar 31 2020 11:34:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46503 * 119.99754 * 2 1 4 4 C 1.39891 * 120.00196 * 180.02562 * 2 1 3 5 5 C 1.38889 * 120.00414 * 174.15108 * 4 2 1 6 6 C 1.38056 * 119.99626 * 179.78360 * 5 4 2 7 7 C 1.38858 * 120.00235 * 0.47390 * 6 5 4 8 8 N 1.40156 * 119.99566 * 179.76509 * 7 6 5 9 9 C 1.34776 * 119.99534 * 215.92829 * 8 7 6 10 10 O 1.21294 * 120.00491 * 354.50855 * 9 8 7 11 11 C 1.50700 * 119.99581 * 174.51460 * 9 8 7 12 12 C 1.53004 * 109.46992 * 179.97438 * 11 9 8 13 13 N 1.46504 * 109.46980 * 179.97438 * 12 11 9 14 14 C 1.36936 * 119.99689 * 269.99706 * 13 12 11 15 15 H 1.08003 * 119.99656 * 143.10476 * 14 13 12 16 16 C 1.38816 * 120.00298 * 323.10442 * 14 13 12 17 17 N 1.31617 * 119.99894 * 159.69416 * 16 14 13 18 18 Si 1.86802 * 119.99871 * 339.69478 * 16 14 13 19 19 H 1.48496 * 109.46974 * 92.31343 * 18 16 14 20 20 H 1.48503 * 109.46861 * 212.31457 * 18 16 14 21 21 H 1.48500 * 109.46988 * 332.31669 * 18 16 14 22 22 C 1.46493 * 119.99960 * 90.00232 * 13 12 11 23 23 C 1.53005 * 117.49744 * 193.05204 * 22 13 12 24 24 C 1.53001 * 117.50050 * 124.39316 * 22 13 12 25 25 C 1.38853 * 120.01039 * 359.78128 * 7 6 5 26 26 C 1.38061 * 119.99922 * 359.97438 * 25 7 6 27 27 H 1.08997 * 109.46893 * 269.99724 * 1 2 3 28 28 H 1.08998 * 109.47298 * 29.99765 * 1 2 3 29 29 H 1.09002 * 109.46848 * 149.99605 * 1 2 3 30 30 H 1.08997 * 109.46757 * 185.19517 * 3 2 1 31 31 H 1.09005 * 109.47087 * 305.19752 * 3 2 1 32 32 H 1.08997 * 109.46849 * 65.19539 * 3 2 1 33 33 H 1.07997 * 120.00226 * 0.02562 * 5 4 2 34 34 H 1.07995 * 120.00584 * 180.23275 * 6 5 4 35 35 H 0.97000 * 120.00144 * 35.92224 * 8 7 6 36 36 H 1.09006 * 109.47074 * 299.99473 * 11 9 8 37 37 H 1.08999 * 109.47347 * 59.99853 * 11 9 8 38 38 H 1.08998 * 109.46932 * 300.00093 * 12 11 9 39 39 H 1.08999 * 109.47020 * 59.99867 * 12 11 9 40 40 H 0.97002 * 119.99765 * 180.02562 * 17 16 14 41 41 H 1.09003 * 115.55268 * 338.71529 * 22 13 12 42 42 H 1.09005 * 117.49812 * 359.97438 * 23 22 13 43 43 H 1.08992 * 117.50398 * 145.01883 * 23 22 13 44 44 H 1.09003 * 117.49656 * 214.97871 * 24 22 13 45 45 H 1.08998 * 117.49530 * 359.96687 * 24 22 13 46 46 H 1.07993 * 119.99935 * 179.97438 * 25 7 6 47 47 H 1.08002 * 119.99823 * 179.97438 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.1645 -1.2115 -0.0005 5 6 3.5480 -1.2146 -0.1231 6 6 4.2385 -2.4100 -0.1191 7 6 3.5491 -3.6097 -0.0025 8 7 4.2499 -4.8235 -0.0034 9 6 3.7142 -5.9104 -0.5935 10 8 2.5856 -5.8662 -1.0357 11 6 4.5174 -7.1807 -0.7037 12 6 3.6831 -8.2521 -1.4088 13 7 4.4642 -9.4869 -1.5164 14 6 5.2530 -9.7045 -2.6144 15 1 6.2064 -10.1999 -2.5048 16 6 4.8272 -9.2883 -3.8685 17 7 5.7011 -9.1222 -4.8385 18 14 3.0139 -8.9641 -4.1791 19 1 2.7179 -7.5302 -3.9309 20 1 2.6851 -9.3009 -5.5875 21 1 2.1975 -9.8034 -3.2657 22 6 4.4013 -10.4887 -0.4495 23 6 5.4527 -11.6002 -0.4613 24 6 4.0031 -11.9133 -0.8407 25 6 2.1656 -3.6071 0.1147 26 6 1.4752 -2.4115 0.1158 27 1 -0.3633 0.0000 1.0277 28 1 -0.3634 0.8900 -0.5138 29 1 -0.3633 -0.8900 -0.5139 30 1 3.2654 1.0717 -0.0931 31 1 1.8661 1.8796 -0.8398 32 1 2.0057 1.7989 0.9328 33 1 4.0838 -0.2817 -0.2176 34 1 5.3146 -2.4124 -0.2107 35 1 5.1205 -4.8813 0.4205 36 1 5.4237 -6.9889 -1.2783 37 1 4.7864 -7.5283 0.2938 38 1 2.7771 -8.4437 -0.8339 39 1 3.4138 -7.9048 -2.4062 40 1 5.4036 -8.8311 -5.7147 41 1 4.0680 -10.1216 0.5212 42 1 6.1910 -11.5862 -1.2632 43 1 5.8108 -11.9646 0.5015 44 1 3.4081 -12.4834 -0.1272 45 1 3.7875 -12.1049 -1.8918 46 1 1.6296 -4.5403 0.2050 47 1 0.3990 -2.4095 0.2066 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000792218398.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:34:27 Heat of formation + Delta-G solvation = 66.522643 kcal Electronic energy + Delta-G solvation = -26075.167015 eV Core-core repulsion = 22453.424684 eV Total energy + Delta-G solvation = -3621.742331 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.34709 -39.00500 -37.27158 -36.39670 -33.95356 -33.83954 -31.80747 -31.22397 -29.84942 -28.51111 -28.34703 -25.10548 -24.28720 -23.01433 -22.58509 -21.48146 -20.92222 -19.94437 -19.63008 -17.92795 -16.99180 -16.80488 -16.12350 -15.80262 -15.57042 -15.29635 -15.18491 -14.79932 -14.55604 -13.81477 -13.77257 -13.57232 -13.53901 -12.91439 -12.82501 -12.67376 -12.51893 -12.38073 -12.20633 -12.16546 -12.08465 -11.82602 -11.39741 -11.05099 -10.79871 -10.67796 -10.44620 -10.36382 -10.04196 -9.69823 -9.49909 -9.43791 -9.31143 -9.05399 -8.88354 -8.48493 -7.10377 -6.75478 -6.01846 -3.46014 1.42916 1.53226 2.93834 2.95315 3.34324 3.43025 3.53238 3.59571 3.91543 4.52996 4.66247 4.71621 4.75809 4.88012 4.95404 5.04081 5.10139 5.28223 5.29849 5.31173 5.37496 5.39323 5.47185 5.54724 5.60721 5.72102 5.79255 5.82952 6.01874 6.03416 6.08627 6.09952 6.20114 6.26683 6.43312 6.48789 6.51584 6.60068 6.63365 6.82890 6.94184 6.98412 7.10217 7.13164 7.39553 7.63712 8.02318 8.36202 8.45869 8.95880 9.68085 10.05987 11.12349 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.019947 B = 0.002772 C = 0.002671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1403.381134 B =10100.351413 C =10479.050870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.096 3.904 2 N -0.643 5.643 3 C 0.092 3.908 4 C 0.193 3.807 5 C -0.182 4.182 6 C -0.099 4.099 7 C 0.095 3.905 8 N -0.679 5.679 9 C 0.515 3.485 10 O -0.528 6.528 11 C -0.154 4.154 12 C 0.152 3.848 13 N -0.573 5.573 14 C -0.274 4.274 15 H 0.086 0.914 16 C 0.040 3.960 17 N -0.898 5.898 18 Si 0.874 3.126 19 H -0.276 1.276 20 H -0.303 1.303 21 H -0.267 1.267 22 C 0.121 3.879 23 C -0.196 4.196 24 C -0.221 4.221 25 C -0.072 4.072 26 C -0.178 4.178 27 H 0.045 0.955 28 H 0.063 0.937 29 H 0.068 0.932 30 H 0.077 0.923 31 H 0.052 0.948 32 H 0.048 0.952 33 H 0.125 0.875 34 H 0.124 0.876 35 H 0.408 0.592 36 H 0.104 0.896 37 H 0.088 0.912 38 H 0.050 0.950 39 H 0.066 0.934 40 H 0.264 0.736 41 H 0.094 0.906 42 H 0.100 0.900 43 H 0.076 0.924 44 H 0.073 0.927 45 H 0.091 0.909 46 H 0.139 0.861 47 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.263 17.506 13.576 22.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.357 5.357 3 C -0.051 4.051 4 C 0.093 3.907 5 C -0.205 4.205 6 C -0.120 4.120 7 C 0.000 4.000 8 N -0.325 5.325 9 C 0.304 3.696 10 O -0.403 6.403 11 C -0.197 4.197 12 C 0.026 3.974 13 N -0.291 5.291 14 C -0.403 4.403 15 H 0.103 0.897 16 C -0.161 4.161 17 N -0.539 5.539 18 Si 0.704 3.296 19 H -0.204 1.204 20 H -0.231 1.231 21 H -0.192 1.192 22 C 0.012 3.988 23 C -0.235 4.235 24 C -0.262 4.262 25 C -0.092 4.092 26 C -0.201 4.201 27 H 0.063 0.937 28 H 0.082 0.918 29 H 0.087 0.913 30 H 0.096 0.904 31 H 0.071 0.929 32 H 0.067 0.933 33 H 0.143 0.857 34 H 0.142 0.858 35 H 0.243 0.757 36 H 0.122 0.878 37 H 0.106 0.894 38 H 0.068 0.932 39 H 0.084 0.916 40 H 0.074 0.926 41 H 0.112 0.888 42 H 0.119 0.881 43 H 0.094 0.906 44 H 0.092 0.908 45 H 0.110 0.890 46 H 0.157 0.843 47 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -6.114 17.683 13.012 22.790 hybrid contribution -0.469 0.221 -0.215 0.562 sum -6.583 17.905 12.796 22.971 Atomic orbital electron populations 1.21563 0.79714 1.02520 1.00915 1.46249 1.04785 1.02997 1.81672 1.21645 0.97748 0.85061 1.00650 1.17823 0.91211 0.85623 0.96034 1.20444 0.92147 0.97926 1.09934 1.20679 0.99630 0.90852 1.00800 1.17640 0.91750 0.85308 1.05289 1.43688 1.22604 1.08662 1.57543 1.21410 0.87487 0.85035 0.75667 1.90657 1.19111 1.83746 1.46767 1.22397 1.01583 0.92162 1.03524 1.21003 0.92063 0.84879 0.99499 1.43746 1.52286 1.13201 1.19835 1.18750 0.98793 1.39075 0.83648 0.89681 1.25440 0.97110 0.98138 0.95425 1.69828 1.33371 1.47179 1.03483 0.87014 0.87772 0.78476 0.76302 1.20362 1.23095 1.19192 1.21136 1.01116 0.84344 0.92155 1.23126 0.93199 1.05388 1.01759 1.23335 0.97582 1.03447 1.01802 1.21102 0.92918 0.98433 0.96796 1.20581 0.99623 0.90637 1.09245 0.93659 0.91828 0.91330 0.90439 0.92907 0.93314 0.85748 0.85772 0.75689 0.87826 0.89394 0.93193 0.91626 0.92574 0.88811 0.88128 0.90578 0.90821 0.89034 0.84334 0.85970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.74 10.10 59.85 0.60 1.34 16 2 N -0.64 -6.24 3.41 -187.49 -0.64 -6.88 16 3 C 0.09 0.65 10.63 59.85 0.64 1.28 16 4 C 0.19 2.32 6.54 -83.70 -0.55 1.77 16 5 C -0.18 -2.07 9.31 -39.41 -0.37 -2.43 16 6 C -0.10 -1.19 9.96 -39.42 -0.39 -1.59 16 7 C 0.10 1.36 6.29 -83.59 -0.53 0.84 16 8 N -0.68 -9.45 5.34 -9.81 -0.05 -9.50 16 9 C 0.52 9.04 7.68 -10.99 -0.08 8.95 16 10 O -0.53 -11.10 13.45 5.55 0.07 -11.02 16 11 C -0.15 -2.74 6.03 -27.88 -0.17 -2.91 16 12 C 0.15 3.34 3.82 -4.04 -0.02 3.32 16 13 N -0.57 -13.33 2.46 -165.66 -0.41 -13.74 16 14 C -0.27 -7.44 9.11 -15.06 -0.14 -7.57 16 15 H 0.09 2.46 6.51 -52.48 -0.34 2.12 16 16 C 0.04 1.15 5.34 -17.43 -0.09 1.06 16 17 N -0.90 -27.19 13.97 55.49 0.78 -26.42 16 18 Si 0.87 23.10 24.99 -169.99 -4.25 18.85 16 19 H -0.28 -7.39 6.56 56.52 0.37 -7.02 16 20 H -0.30 -8.09 7.11 56.52 0.40 -7.68 16 21 H -0.27 -7.01 7.11 56.52 0.40 -6.61 16 22 C 0.12 2.41 6.60 -67.93 -0.45 1.96 16 23 C -0.20 -3.67 9.86 -26.69 -0.26 -3.94 16 24 C -0.22 -4.27 10.19 -26.69 -0.27 -4.54 16 25 C -0.07 -1.08 8.69 -39.42 -0.34 -1.42 16 26 C -0.18 -2.32 9.16 -39.41 -0.36 -2.68 16 27 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 28 H 0.06 0.38 8.07 -51.93 -0.42 -0.04 16 29 H 0.07 0.55 6.45 -51.93 -0.33 0.22 16 30 H 0.08 0.51 5.31 -51.93 -0.28 0.23 16 31 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 33 H 0.12 1.12 5.74 -52.49 -0.30 0.82 16 34 H 0.12 1.22 8.06 -52.49 -0.42 0.80 16 35 H 0.41 4.28 8.83 -40.82 -0.36 3.92 16 36 H 0.10 1.94 8.14 -51.93 -0.42 1.52 16 37 H 0.09 1.32 8.14 -51.93 -0.42 0.89 16 38 H 0.05 1.05 8.03 -51.93 -0.42 0.63 16 39 H 0.07 1.65 2.88 -51.93 -0.15 1.50 16 40 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 41 H 0.09 1.61 8.14 -51.93 -0.42 1.19 16 42 H 0.10 2.12 6.34 -51.93 -0.33 1.79 16 43 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 44 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 45 H 0.09 2.00 8.14 -51.93 -0.42 1.58 16 46 H 0.14 2.28 6.25 -52.49 -0.33 1.95 16 47 H 0.12 1.39 6.30 -52.49 -0.33 1.06 16 LS Contribution 374.04 15.07 5.64 5.64 Total: -1.00 -33.59 374.04 -8.62 -42.21 By element: Atomic # 1 Polarization: 14.40 SS G_CDS: -6.98 Total: 7.42 kcal Atomic # 6 Polarization: -3.78 SS G_CDS: -2.78 Total: -6.56 kcal Atomic # 7 Polarization: -56.22 SS G_CDS: -0.33 Total: -56.54 kcal Atomic # 8 Polarization: -11.10 SS G_CDS: 0.07 Total: -11.02 kcal Atomic # 14 Polarization: 23.10 SS G_CDS: -4.25 Total: 18.85 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -33.59 -8.62 -42.21 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000792218398.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.731 kcal (2) G-P(sol) polarization free energy of solvation -33.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.208 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds