Wall clock time and date at job start Tue Mar 31 2020 11:29:13
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46497 * 1
3 3 C 1.46503 * 120.00188 * 2 1
4 4 C 1.39672 * 119.99816 * 179.97438 * 2 1 3
5 5 C 1.38910 * 120.07596 * 0.02562 * 4 2 1
6 6 C 1.38109 * 119.92719 * 180.02562 * 5 4 2
7 7 C 1.38285 * 120.07177 * 359.97438 * 6 5 4
8 8 C 1.50699 * 119.92275 * 180.02562 * 7 6 5
9 9 N 1.46498 * 109.47316 * 90.00243 * 8 7 6
10 10 C 1.34779 * 119.99961 * 180.02562 * 9 8 7
11 11 O 1.21584 * 120.00205 * 4.67641 * 10 9 8
12 12 N 1.34778 * 119.99537 * 184.68371 * 10 9 8
13 13 C 1.46498 * 119.99663 * 184.72934 * 12 10 9
14 14 C 1.52998 * 109.47310 * 184.70876 * 13 12 10
15 15 C 1.50704 * 115.54563 * 294.79303 * 14 13 12
16 16 H 1.08007 * 119.99953 * 121.64940 * 15 14 13
17 17 C 1.37876 * 120.00263 * 301.36461 * 15 14 13
18 18 N 1.31508 * 120.00236 * 173.19361 * 17 15 14
19 19 Si 1.86800 * 119.99944 * 353.19993 * 17 15 14
20 20 H 1.48499 * 109.47522 * 94.23656 * 19 17 15
21 21 H 1.48507 * 109.47256 * 214.23911 * 19 17 15
22 22 H 1.48507 * 109.46899 * 334.23708 * 19 17 15
23 23 C 1.53001 * 117.50012 * 80.46176 * 14 13 12
24 24 C 1.53001 * 117.50291 * 149.12365 * 14 13 12
25 25 C 1.38289 * 120.15119 * 0.27551 * 7 6 5
26 26 C 1.38103 * 120.07287 * 359.45412 * 25 7 6
27 27 H 1.09000 * 109.47423 * 270.00664 * 1 2 3
28 28 H 1.09010 * 109.46696 * 30.00239 * 1 2 3
29 29 H 1.08997 * 109.47455 * 149.99996 * 1 2 3
30 30 H 1.09006 * 109.46979 * 239.99599 * 3 2 1
31 31 H 1.08993 * 109.47070 * 359.97438 * 3 2 1
32 32 H 1.09000 * 109.47357 * 119.99792 * 3 2 1
33 33 H 1.08001 * 120.03464 * 0.03325 * 5 4 2
34 34 H 1.07994 * 119.96045 * 179.97438 * 6 5 4
35 35 H 1.08997 * 109.47372 * 329.99855 * 8 7 6
36 36 H 1.08999 * 109.46908 * 209.99889 * 8 7 6
37 37 H 0.97001 * 120.00008 * 359.97438 * 9 8 7
38 38 H 0.96995 * 120.00503 * 4.73507 * 12 10 9
39 39 H 1.08998 * 109.47069 * 64.70597 * 13 12 10
40 40 H 1.09003 * 109.47733 * 304.70710 * 13 12 10
41 41 H 0.97001 * 120.00265 * 180.02562 * 18 17 15
42 42 H 1.09000 * 117.49568 * 215.00735 * 23 14 13
43 43 H 1.08993 * 117.49839 * 0.02562 * 23 14 13
44 44 H 1.08999 * 117.49851 * 359.97438 * 24 14 13
45 45 H 1.08997 * 117.49732 * 144.97003 * 24 14 13
46 46 H 1.08000 * 119.95813 * 179.70235 * 25 7 6
47 47 H 1.08003 * 120.03671 * 180.27690 * 26 25 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.1975 1.2687 0.0000
4 6 2.1633 -1.2096 0.0005
5 6 1.4703 -2.4135 0.0005
6 6 2.1639 -3.6078 0.0016
7 6 3.5468 -3.6060 0.0021
8 6 4.3002 -4.9111 0.0027
9 7 4.5450 -5.3343 -1.3783
10 6 5.2071 -6.4822 -1.6240
11 8 5.5267 -7.2089 -0.7030
12 7 5.5152 -6.8245 -2.8906
13 6 6.1419 -8.1194 -3.1676
14 6 6.4915 -8.2092 -4.6544
15 6 5.3173 -8.2124 -5.5991
16 1 5.2342 -7.4504 -6.3599
17 6 4.3521 -9.1915 -5.4958
18 7 3.2620 -9.1201 -6.2280
19 14 4.5927 -10.6195 -4.3157
20 1 3.9342 -10.3086 -3.0216
21 1 3.9907 -11.8473 -4.8951
22 1 6.0445 -10.8379 -4.0925
23 6 7.7726 -7.5156 -5.1221
24 6 7.7137 -9.0432 -5.0438
25 6 4.2398 -2.4093 0.0074
26 6 3.5524 -1.2115 0.0007
27 1 -0.3634 0.0001 1.0276
28 1 -0.3633 0.8901 -0.5139
29 1 -0.3634 -0.8899 -0.5138
30 1 2.8243 1.3264 -0.8900
31 1 1.4893 2.0972 -0.0005
32 1 2.8242 1.3265 0.8900
33 1 0.3903 -2.4156 -0.0004
34 1 1.6257 -4.5441 0.0020
35 1 3.7110 -5.6706 0.5165
36 1 5.2524 -4.7806 0.5169
37 1 4.2298 -4.7888 -2.1158
38 1 5.3220 -6.2136 -3.6188
39 1 5.4503 -8.9208 -2.9079
40 1 7.0510 -8.2175 -2.5742
41 1 2.5827 -9.8088 -6.1550
42 1 7.7660 -7.0616 -6.1131
43 1 8.3665 -6.9957 -4.3705
44 1 8.2690 -9.5276 -4.2406
45 1 7.6683 -9.5946 -5.9829
46 1 5.3198 -2.4115 0.0126
47 1 4.0943 -0.2772 0.0002
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000797412518.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:29:13
Heat of formation + Delta-G solvation = 33.004092 kcal
Electronic energy + Delta-G solvation = -25710.935728 eV
Core-core repulsion = 22087.739924 eV
Total energy + Delta-G solvation = -3623.195804 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 317.184 amu
Computer time = 0.65 seconds
Orbital eigenvalues (eV)
-39.99507 -39.26898 -37.20122 -36.68644 -34.14755 -33.26274 -32.17037 -31.31379
-30.57025 -28.48269 -27.22567 -26.09736 -24.86656 -23.47430 -22.50945 -21.56704
-20.59043 -20.27367 -19.24806 -17.92353 -17.48310 -16.61169 -16.15334 -15.65674
-15.40731 -15.27493 -15.08031 -14.72199 -14.33247 -14.05368 -13.99780 -13.68312
-13.58184 -13.15679 -13.02551 -12.90499 -12.65379 -12.61391 -12.45590 -12.29277
-12.14536 -11.92929 -11.36970 -11.01849 -10.94992 -10.63404 -10.52178 -10.20200
-10.08811 -9.70460 -9.44977 -9.15393 -9.04426 -8.83642 -8.72965 -8.46033
-8.03482 -7.51604 -6.15798 -4.16955 1.33111 1.34719 2.81517 3.25609
3.33984 3.42429 3.48306 3.78440 3.84440 4.41626 4.59902 4.62956
4.75111 4.80651 4.84620 4.88311 4.97400 5.09559 5.20758 5.26424
5.28314 5.30203 5.33403 5.35681 5.55630 5.70542 5.73285 5.88853
5.92397 6.01165 6.11802 6.19233 6.24390 6.31939 6.49169 6.55713
6.64018 6.68024 6.74891 6.85459 6.95206 6.97654 7.12058 7.22579
7.29211 7.55691 7.70568 8.43909 8.66401 8.86361 9.19655 9.48439
10.95175
Molecular weight = 317.18amu
Principal moments of inertia in cm(-1)
A = 0.017949 B = 0.002568 C = 0.002490
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1559.562398 B =10902.059961 C =11240.835772
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.093 3.907
2 N -0.640 5.640
3 C 0.097 3.903
4 C 0.216 3.784
5 C -0.199 4.199
6 C -0.050 4.050
7 C -0.160 4.160
8 C 0.189 3.811
9 N -0.748 5.748
10 C 0.699 3.301
11 O -0.608 6.608
12 N -0.719 5.719
13 C 0.172 3.828
14 C -0.016 4.016
15 C -0.489 4.489
16 H 0.078 0.922
17 C 0.083 3.917
18 N -0.892 5.892
19 Si 0.870 3.130
20 H -0.277 1.277
21 H -0.294 1.294
22 H -0.252 1.252
23 C -0.180 4.180
24 C -0.189 4.189
25 C -0.052 4.052
26 C -0.198 4.198
27 H 0.047 0.953
28 H 0.065 0.935
29 H 0.070 0.930
30 H 0.054 0.946
31 H 0.071 0.929
32 H 0.053 0.947
33 H 0.122 0.878
34 H 0.124 0.876
35 H 0.068 0.932
36 H 0.066 0.934
37 H 0.397 0.603
38 H 0.403 0.597
39 H 0.052 0.948
40 H 0.049 0.951
41 H 0.265 0.735
42 H 0.084 0.916
43 H 0.073 0.927
44 H 0.070 0.930
45 H 0.088 0.912
46 H 0.123 0.877
47 H 0.120 0.880
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -3.228 19.852 12.790 23.835
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.050 4.050
2 N -0.352 5.352
3 C -0.047 4.047
4 C 0.115 3.885
5 C -0.221 4.221
6 C -0.069 4.069
7 C -0.163 4.163
8 C 0.065 3.935
9 N -0.405 5.405
10 C 0.399 3.601
11 O -0.488 6.488
12 N -0.373 5.373
13 C 0.048 3.952
14 C -0.017 4.017
15 C -0.526 4.526
16 H 0.096 0.904
17 C -0.120 4.120
18 N -0.529 5.529
19 Si 0.698 3.302
20 H -0.204 1.204
21 H -0.221 1.221
22 H -0.176 1.176
23 C -0.218 4.218
24 C -0.227 4.227
25 C -0.071 4.071
26 C -0.220 4.220
27 H 0.065 0.935
28 H 0.084 0.916
29 H 0.088 0.912
30 H 0.073 0.927
31 H 0.090 0.910
32 H 0.072 0.928
33 H 0.140 0.860
34 H 0.142 0.858
35 H 0.086 0.914
36 H 0.085 0.915
37 H 0.230 0.770
38 H 0.237 0.763
39 H 0.070 0.930
40 H 0.067 0.933
41 H 0.075 0.925
42 H 0.103 0.897
43 H 0.091 0.909
44 H 0.089 0.911
45 H 0.107 0.893
46 H 0.141 0.859
47 H 0.138 0.862
Dipole moment (debyes) X Y Z Total
from point charges -3.206 19.245 13.580 23.771
hybrid contribution -0.367 -0.225 -0.152 0.457
sum -3.573 19.020 13.427 23.554
Atomic orbital electron populations
1.21667 0.79541 1.02749 1.01092 1.46333 1.04988 1.03232 1.80678
1.21590 0.97007 0.84828 1.01250 1.17864 0.91282 0.85567 0.93830
1.20671 0.99623 0.90990 1.10811 1.20882 0.93450 0.97510 0.95081
1.19686 0.93737 0.94493 1.08350 1.19819 0.98825 0.91966 0.82844
1.45199 1.62091 1.24853 1.08309 1.16035 0.78957 0.81257 0.83821
1.90857 1.60783 1.53230 1.43894 1.44987 1.65031 1.21091 1.06156
1.20925 0.95584 0.83347 0.95346 1.19606 0.89419 1.00857 0.91804
1.20250 1.03375 1.13429 1.15500 0.90445 1.24907 0.94316 0.97645
0.95151 1.69893 1.07864 1.34461 1.40649 0.87000 0.80051 0.82066
0.81034 1.20365 1.22060 1.17575 1.22769 1.02710 0.94808 1.01464
1.23060 1.04537 0.92952 1.02177 1.20841 0.99566 0.91204 0.95467
1.20604 0.91946 0.98521 1.10939 0.93474 0.91613 0.91160 0.92745
0.91004 0.92825 0.86000 0.85799 0.91379 0.91545 0.76969 0.76259
0.92996 0.93318 0.92492 0.89734 0.90867 0.91123 0.89313 0.85920
0.86190
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.09 0.56 10.16 59.85 0.61 1.17 16
2 N -0.64 -5.23 3.41 -187.55 -0.64 -5.87 16
3 C 0.10 0.57 9.40 59.85 0.56 1.13 16
4 C 0.22 2.18 6.55 -83.79 -0.55 1.64 16
5 C -0.20 -2.04 9.21 -39.38 -0.36 -2.41 16
6 C -0.05 -0.55 9.69 -39.61 -0.38 -0.94 16
7 C -0.16 -1.84 5.25 -104.59 -0.55 -2.39 16
8 C 0.19 2.56 5.80 -5.20 -0.03 2.53 16
9 N -0.75 -11.50 5.55 -66.42 -0.37 -11.87 16
10 C 0.70 13.87 8.55 -86.92 -0.74 13.12 16
11 O -0.61 -14.17 16.33 5.29 0.09 -14.08 16
12 N -0.72 -14.51 5.48 -65.23 -0.36 -14.87 16
13 C 0.17 3.85 5.08 -4.04 -0.02 3.83 16
14 C -0.02 -0.35 0.85 -155.66 -0.13 -0.48 16
15 C -0.49 -12.97 9.19 -34.44 -0.32 -13.28 16
16 H 0.08 2.22 8.06 -52.48 -0.42 1.79 16
17 C 0.08 2.33 5.46 -17.82 -0.10 2.23 16
18 N -0.89 -26.44 13.96 55.43 0.77 -25.67 16
19 Si 0.87 21.85 24.69 -169.99 -4.20 17.66 16
20 H -0.28 -7.15 6.96 56.52 0.39 -6.76 16
21 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16
22 H -0.25 -6.00 6.12 56.52 0.35 -5.65 16
23 C -0.18 -3.53 9.96 -26.69 -0.27 -3.80 16
24 C -0.19 -3.92 8.70 -26.69 -0.23 -4.15 16
25 C -0.05 -0.54 9.69 -39.61 -0.38 -0.93 16
26 C -0.20 -1.96 9.31 -39.38 -0.37 -2.33 16
27 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16
28 H 0.07 0.30 7.92 -51.92 -0.41 -0.12 16
29 H 0.07 0.43 6.20 -51.93 -0.32 0.11 16
30 H 0.05 0.32 7.95 -51.93 -0.41 -0.10 16
31 H 0.07 0.29 7.79 -51.93 -0.40 -0.11 16
32 H 0.05 0.30 7.95 -51.93 -0.41 -0.11 16
33 H 0.12 1.06 6.14 -52.49 -0.32 0.74 16
34 H 0.12 1.30 8.06 -52.49 -0.42 0.88 16
35 H 0.07 0.98 8.08 -51.93 -0.42 0.56 16
36 H 0.07 0.90 8.08 -51.93 -0.42 0.48 16
37 H 0.40 5.40 8.49 -40.82 -0.35 5.05 16
38 H 0.40 7.58 8.36 -40.82 -0.34 7.24 16
39 H 0.05 1.29 4.25 -51.93 -0.22 1.06 16
40 H 0.05 1.06 8.06 -51.93 -0.42 0.64 16
41 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16
42 H 0.08 1.63 8.14 -51.93 -0.42 1.21 16
43 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16
44 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16
45 H 0.09 1.87 8.14 -51.93 -0.42 1.45 16
46 H 0.12 1.15 8.06 -52.49 -0.42 0.72 16
47 H 0.12 0.99 6.73 -52.48 -0.35 0.64 16
LS Contribution 381.66 15.07 5.75 5.75
Total: -1.00 -32.88 381.66 -9.60 -42.48
By element:
Atomic # 1 Polarization: 18.91 SS G_CDS: -7.39 Total: 11.53 kcal
Atomic # 6 Polarization: -1.80 SS G_CDS: -3.26 Total: -5.06 kcal
Atomic # 7 Polarization: -57.68 SS G_CDS: -0.59 Total: -58.27 kcal
Atomic # 8 Polarization: -14.17 SS G_CDS: 0.09 Total: -14.08 kcal
Atomic # 14 Polarization: 21.85 SS G_CDS: -4.20 Total: 17.66 kcal
Total LS contribution 5.75 Total: 5.75 kcal
Total: -32.88 -9.60 -42.48 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000797412518.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 75.485 kcal
(2) G-P(sol) polarization free energy of solvation -32.881 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.604 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.600 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.481 kcal
(6) G-S(sol) free energy of system = (1) + (5) 33.004 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.65 seconds