Wall clock time and date at job start Tue Mar 31 2020 11:29:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46503 * 120.00188 * 2 1 4 4 C 1.39672 * 119.99816 * 179.97438 * 2 1 3 5 5 C 1.38910 * 120.07596 * 0.02562 * 4 2 1 6 6 C 1.38109 * 119.92719 * 180.02562 * 5 4 2 7 7 C 1.38285 * 120.07177 * 359.97438 * 6 5 4 8 8 C 1.50699 * 119.92275 * 180.02562 * 7 6 5 9 9 N 1.46498 * 109.47316 * 90.00243 * 8 7 6 10 10 C 1.34779 * 119.99961 * 180.02562 * 9 8 7 11 11 O 1.21584 * 120.00205 * 4.67641 * 10 9 8 12 12 N 1.34778 * 119.99537 * 184.68371 * 10 9 8 13 13 C 1.46498 * 119.99663 * 184.72934 * 12 10 9 14 14 C 1.52998 * 109.47310 * 184.70876 * 13 12 10 15 15 C 1.50704 * 115.54563 * 294.79303 * 14 13 12 16 16 H 1.08007 * 119.99953 * 121.64940 * 15 14 13 17 17 C 1.37876 * 120.00263 * 301.36461 * 15 14 13 18 18 N 1.31508 * 120.00236 * 173.19361 * 17 15 14 19 19 Si 1.86800 * 119.99944 * 353.19993 * 17 15 14 20 20 H 1.48499 * 109.47522 * 94.23656 * 19 17 15 21 21 H 1.48507 * 109.47256 * 214.23911 * 19 17 15 22 22 H 1.48507 * 109.46899 * 334.23708 * 19 17 15 23 23 C 1.53001 * 117.50012 * 80.46176 * 14 13 12 24 24 C 1.53001 * 117.50291 * 149.12365 * 14 13 12 25 25 C 1.38289 * 120.15119 * 0.27551 * 7 6 5 26 26 C 1.38103 * 120.07287 * 359.45412 * 25 7 6 27 27 H 1.09000 * 109.47423 * 270.00664 * 1 2 3 28 28 H 1.09010 * 109.46696 * 30.00239 * 1 2 3 29 29 H 1.08997 * 109.47455 * 149.99996 * 1 2 3 30 30 H 1.09006 * 109.46979 * 239.99599 * 3 2 1 31 31 H 1.08993 * 109.47070 * 359.97438 * 3 2 1 32 32 H 1.09000 * 109.47357 * 119.99792 * 3 2 1 33 33 H 1.08001 * 120.03464 * 0.03325 * 5 4 2 34 34 H 1.07994 * 119.96045 * 179.97438 * 6 5 4 35 35 H 1.08997 * 109.47372 * 329.99855 * 8 7 6 36 36 H 1.08999 * 109.46908 * 209.99889 * 8 7 6 37 37 H 0.97001 * 120.00008 * 359.97438 * 9 8 7 38 38 H 0.96995 * 120.00503 * 4.73507 * 12 10 9 39 39 H 1.08998 * 109.47069 * 64.70597 * 13 12 10 40 40 H 1.09003 * 109.47733 * 304.70710 * 13 12 10 41 41 H 0.97001 * 120.00265 * 180.02562 * 18 17 15 42 42 H 1.09000 * 117.49568 * 215.00735 * 23 14 13 43 43 H 1.08993 * 117.49839 * 0.02562 * 23 14 13 44 44 H 1.08999 * 117.49851 * 359.97438 * 24 14 13 45 45 H 1.08997 * 117.49732 * 144.97003 * 24 14 13 46 46 H 1.08000 * 119.95813 * 179.70235 * 25 7 6 47 47 H 1.08003 * 120.03671 * 180.27690 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1633 -1.2096 0.0005 5 6 1.4703 -2.4135 0.0005 6 6 2.1639 -3.6078 0.0016 7 6 3.5468 -3.6060 0.0021 8 6 4.3002 -4.9111 0.0027 9 7 4.5450 -5.3343 -1.3783 10 6 5.2071 -6.4822 -1.6240 11 8 5.5267 -7.2089 -0.7030 12 7 5.5152 -6.8245 -2.8906 13 6 6.1419 -8.1194 -3.1676 14 6 6.4915 -8.2092 -4.6544 15 6 5.3173 -8.2124 -5.5991 16 1 5.2342 -7.4504 -6.3599 17 6 4.3521 -9.1915 -5.4958 18 7 3.2620 -9.1201 -6.2280 19 14 4.5927 -10.6195 -4.3157 20 1 3.9342 -10.3086 -3.0216 21 1 3.9907 -11.8473 -4.8951 22 1 6.0445 -10.8379 -4.0925 23 6 7.7726 -7.5156 -5.1221 24 6 7.7137 -9.0432 -5.0438 25 6 4.2398 -2.4093 0.0074 26 6 3.5524 -1.2115 0.0007 27 1 -0.3634 0.0001 1.0276 28 1 -0.3633 0.8901 -0.5139 29 1 -0.3634 -0.8899 -0.5138 30 1 2.8243 1.3264 -0.8900 31 1 1.4893 2.0972 -0.0005 32 1 2.8242 1.3265 0.8900 33 1 0.3903 -2.4156 -0.0004 34 1 1.6257 -4.5441 0.0020 35 1 3.7110 -5.6706 0.5165 36 1 5.2524 -4.7806 0.5169 37 1 4.2298 -4.7888 -2.1158 38 1 5.3220 -6.2136 -3.6188 39 1 5.4503 -8.9208 -2.9079 40 1 7.0510 -8.2175 -2.5742 41 1 2.5827 -9.8088 -6.1550 42 1 7.7660 -7.0616 -6.1131 43 1 8.3665 -6.9957 -4.3705 44 1 8.2690 -9.5276 -4.2406 45 1 7.6683 -9.5946 -5.9829 46 1 5.3198 -2.4115 0.0126 47 1 4.0943 -0.2772 0.0002 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000797412518.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:29:13 Heat of formation + Delta-G solvation = 33.004092 kcal Electronic energy + Delta-G solvation = -25710.935728 eV Core-core repulsion = 22087.739924 eV Total energy + Delta-G solvation = -3623.195804 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.99507 -39.26898 -37.20122 -36.68644 -34.14755 -33.26274 -32.17037 -31.31379 -30.57025 -28.48269 -27.22567 -26.09736 -24.86656 -23.47430 -22.50945 -21.56704 -20.59043 -20.27367 -19.24806 -17.92353 -17.48310 -16.61169 -16.15334 -15.65674 -15.40731 -15.27493 -15.08031 -14.72199 -14.33247 -14.05368 -13.99780 -13.68312 -13.58184 -13.15679 -13.02551 -12.90499 -12.65379 -12.61391 -12.45590 -12.29277 -12.14536 -11.92929 -11.36970 -11.01849 -10.94992 -10.63404 -10.52178 -10.20200 -10.08811 -9.70460 -9.44977 -9.15393 -9.04426 -8.83642 -8.72965 -8.46033 -8.03482 -7.51604 -6.15798 -4.16955 1.33111 1.34719 2.81517 3.25609 3.33984 3.42429 3.48306 3.78440 3.84440 4.41626 4.59902 4.62956 4.75111 4.80651 4.84620 4.88311 4.97400 5.09559 5.20758 5.26424 5.28314 5.30203 5.33403 5.35681 5.55630 5.70542 5.73285 5.88853 5.92397 6.01165 6.11802 6.19233 6.24390 6.31939 6.49169 6.55713 6.64018 6.68024 6.74891 6.85459 6.95206 6.97654 7.12058 7.22579 7.29211 7.55691 7.70568 8.43909 8.66401 8.86361 9.19655 9.48439 10.95175 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.017949 B = 0.002568 C = 0.002490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1559.562398 B =10902.059961 C =11240.835772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.640 5.640 3 C 0.097 3.903 4 C 0.216 3.784 5 C -0.199 4.199 6 C -0.050 4.050 7 C -0.160 4.160 8 C 0.189 3.811 9 N -0.748 5.748 10 C 0.699 3.301 11 O -0.608 6.608 12 N -0.719 5.719 13 C 0.172 3.828 14 C -0.016 4.016 15 C -0.489 4.489 16 H 0.078 0.922 17 C 0.083 3.917 18 N -0.892 5.892 19 Si 0.870 3.130 20 H -0.277 1.277 21 H -0.294 1.294 22 H -0.252 1.252 23 C -0.180 4.180 24 C -0.189 4.189 25 C -0.052 4.052 26 C -0.198 4.198 27 H 0.047 0.953 28 H 0.065 0.935 29 H 0.070 0.930 30 H 0.054 0.946 31 H 0.071 0.929 32 H 0.053 0.947 33 H 0.122 0.878 34 H 0.124 0.876 35 H 0.068 0.932 36 H 0.066 0.934 37 H 0.397 0.603 38 H 0.403 0.597 39 H 0.052 0.948 40 H 0.049 0.951 41 H 0.265 0.735 42 H 0.084 0.916 43 H 0.073 0.927 44 H 0.070 0.930 45 H 0.088 0.912 46 H 0.123 0.877 47 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.228 19.852 12.790 23.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 N -0.352 5.352 3 C -0.047 4.047 4 C 0.115 3.885 5 C -0.221 4.221 6 C -0.069 4.069 7 C -0.163 4.163 8 C 0.065 3.935 9 N -0.405 5.405 10 C 0.399 3.601 11 O -0.488 6.488 12 N -0.373 5.373 13 C 0.048 3.952 14 C -0.017 4.017 15 C -0.526 4.526 16 H 0.096 0.904 17 C -0.120 4.120 18 N -0.529 5.529 19 Si 0.698 3.302 20 H -0.204 1.204 21 H -0.221 1.221 22 H -0.176 1.176 23 C -0.218 4.218 24 C -0.227 4.227 25 C -0.071 4.071 26 C -0.220 4.220 27 H 0.065 0.935 28 H 0.084 0.916 29 H 0.088 0.912 30 H 0.073 0.927 31 H 0.090 0.910 32 H 0.072 0.928 33 H 0.140 0.860 34 H 0.142 0.858 35 H 0.086 0.914 36 H 0.085 0.915 37 H 0.230 0.770 38 H 0.237 0.763 39 H 0.070 0.930 40 H 0.067 0.933 41 H 0.075 0.925 42 H 0.103 0.897 43 H 0.091 0.909 44 H 0.089 0.911 45 H 0.107 0.893 46 H 0.141 0.859 47 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -3.206 19.245 13.580 23.771 hybrid contribution -0.367 -0.225 -0.152 0.457 sum -3.573 19.020 13.427 23.554 Atomic orbital electron populations 1.21667 0.79541 1.02749 1.01092 1.46333 1.04988 1.03232 1.80678 1.21590 0.97007 0.84828 1.01250 1.17864 0.91282 0.85567 0.93830 1.20671 0.99623 0.90990 1.10811 1.20882 0.93450 0.97510 0.95081 1.19686 0.93737 0.94493 1.08350 1.19819 0.98825 0.91966 0.82844 1.45199 1.62091 1.24853 1.08309 1.16035 0.78957 0.81257 0.83821 1.90857 1.60783 1.53230 1.43894 1.44987 1.65031 1.21091 1.06156 1.20925 0.95584 0.83347 0.95346 1.19606 0.89419 1.00857 0.91804 1.20250 1.03375 1.13429 1.15500 0.90445 1.24907 0.94316 0.97645 0.95151 1.69893 1.07864 1.34461 1.40649 0.87000 0.80051 0.82066 0.81034 1.20365 1.22060 1.17575 1.22769 1.02710 0.94808 1.01464 1.23060 1.04537 0.92952 1.02177 1.20841 0.99566 0.91204 0.95467 1.20604 0.91946 0.98521 1.10939 0.93474 0.91613 0.91160 0.92745 0.91004 0.92825 0.86000 0.85799 0.91379 0.91545 0.76969 0.76259 0.92996 0.93318 0.92492 0.89734 0.90867 0.91123 0.89313 0.85920 0.86190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.56 10.16 59.85 0.61 1.17 16 2 N -0.64 -5.23 3.41 -187.55 -0.64 -5.87 16 3 C 0.10 0.57 9.40 59.85 0.56 1.13 16 4 C 0.22 2.18 6.55 -83.79 -0.55 1.64 16 5 C -0.20 -2.04 9.21 -39.38 -0.36 -2.41 16 6 C -0.05 -0.55 9.69 -39.61 -0.38 -0.94 16 7 C -0.16 -1.84 5.25 -104.59 -0.55 -2.39 16 8 C 0.19 2.56 5.80 -5.20 -0.03 2.53 16 9 N -0.75 -11.50 5.55 -66.42 -0.37 -11.87 16 10 C 0.70 13.87 8.55 -86.92 -0.74 13.12 16 11 O -0.61 -14.17 16.33 5.29 0.09 -14.08 16 12 N -0.72 -14.51 5.48 -65.23 -0.36 -14.87 16 13 C 0.17 3.85 5.08 -4.04 -0.02 3.83 16 14 C -0.02 -0.35 0.85 -155.66 -0.13 -0.48 16 15 C -0.49 -12.97 9.19 -34.44 -0.32 -13.28 16 16 H 0.08 2.22 8.06 -52.48 -0.42 1.79 16 17 C 0.08 2.33 5.46 -17.82 -0.10 2.23 16 18 N -0.89 -26.44 13.96 55.43 0.77 -25.67 16 19 Si 0.87 21.85 24.69 -169.99 -4.20 17.66 16 20 H -0.28 -7.15 6.96 56.52 0.39 -6.76 16 21 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 22 H -0.25 -6.00 6.12 56.52 0.35 -5.65 16 23 C -0.18 -3.53 9.96 -26.69 -0.27 -3.80 16 24 C -0.19 -3.92 8.70 -26.69 -0.23 -4.15 16 25 C -0.05 -0.54 9.69 -39.61 -0.38 -0.93 16 26 C -0.20 -1.96 9.31 -39.38 -0.37 -2.33 16 27 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 28 H 0.07 0.30 7.92 -51.92 -0.41 -0.12 16 29 H 0.07 0.43 6.20 -51.93 -0.32 0.11 16 30 H 0.05 0.32 7.95 -51.93 -0.41 -0.10 16 31 H 0.07 0.29 7.79 -51.93 -0.40 -0.11 16 32 H 0.05 0.30 7.95 -51.93 -0.41 -0.11 16 33 H 0.12 1.06 6.14 -52.49 -0.32 0.74 16 34 H 0.12 1.30 8.06 -52.49 -0.42 0.88 16 35 H 0.07 0.98 8.08 -51.93 -0.42 0.56 16 36 H 0.07 0.90 8.08 -51.93 -0.42 0.48 16 37 H 0.40 5.40 8.49 -40.82 -0.35 5.05 16 38 H 0.40 7.58 8.36 -40.82 -0.34 7.24 16 39 H 0.05 1.29 4.25 -51.93 -0.22 1.06 16 40 H 0.05 1.06 8.06 -51.93 -0.42 0.64 16 41 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 42 H 0.08 1.63 8.14 -51.93 -0.42 1.21 16 43 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 44 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 45 H 0.09 1.87 8.14 -51.93 -0.42 1.45 16 46 H 0.12 1.15 8.06 -52.49 -0.42 0.72 16 47 H 0.12 0.99 6.73 -52.48 -0.35 0.64 16 LS Contribution 381.66 15.07 5.75 5.75 Total: -1.00 -32.88 381.66 -9.60 -42.48 By element: Atomic # 1 Polarization: 18.91 SS G_CDS: -7.39 Total: 11.53 kcal Atomic # 6 Polarization: -1.80 SS G_CDS: -3.26 Total: -5.06 kcal Atomic # 7 Polarization: -57.68 SS G_CDS: -0.59 Total: -58.27 kcal Atomic # 8 Polarization: -14.17 SS G_CDS: 0.09 Total: -14.08 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -4.20 Total: 17.66 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -32.88 -9.60 -42.48 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000797412518.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.485 kcal (2) G-P(sol) polarization free energy of solvation -32.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.481 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds