Wall clock time and date at job start Tue Mar 31 2020 11:29:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46503 * 120.00188 * 2 1 4 4 C 1.39672 * 119.99816 * 179.97438 * 2 1 3 5 5 C 1.38910 * 120.07596 * 0.02562 * 4 2 1 6 6 C 1.38109 * 119.92719 * 180.02562 * 5 4 2 7 7 C 1.38285 * 120.07177 * 359.97438 * 6 5 4 8 8 C 1.50699 * 119.92275 * 180.02562 * 7 6 5 9 9 N 1.46498 * 109.47316 * 90.00243 * 8 7 6 10 10 C 1.34779 * 119.99961 * 180.02562 * 9 8 7 11 11 O 1.21584 * 120.00205 * 4.67641 * 10 9 8 12 12 N 1.34778 * 119.99537 * 184.68371 * 10 9 8 13 13 C 1.46498 * 119.99663 * 184.72934 * 12 10 9 14 14 C 1.52998 * 109.47310 * 184.70876 * 13 12 10 15 15 C 1.50704 * 115.54563 * 294.79303 * 14 13 12 16 16 H 1.08007 * 119.99953 * 121.64940 * 15 14 13 17 17 C 1.37876 * 120.00263 * 301.36461 * 15 14 13 18 18 N 1.31508 * 120.00236 * 173.19361 * 17 15 14 19 19 Si 1.86800 * 119.99944 * 353.19993 * 17 15 14 20 20 H 1.48499 * 109.47522 * 94.23656 * 19 17 15 21 21 H 1.48507 * 109.47256 * 214.23911 * 19 17 15 22 22 H 1.48507 * 109.46899 * 334.23708 * 19 17 15 23 23 C 1.53001 * 117.50012 * 80.46176 * 14 13 12 24 24 C 1.53001 * 117.50291 * 149.12365 * 14 13 12 25 25 C 1.38289 * 120.15119 * 0.27551 * 7 6 5 26 26 C 1.38103 * 120.07287 * 359.45412 * 25 7 6 27 27 H 1.09000 * 109.47423 * 270.00664 * 1 2 3 28 28 H 1.09010 * 109.46696 * 30.00239 * 1 2 3 29 29 H 1.08997 * 109.47455 * 149.99996 * 1 2 3 30 30 H 1.09006 * 109.46979 * 239.99599 * 3 2 1 31 31 H 1.08993 * 109.47070 * 359.97438 * 3 2 1 32 32 H 1.09000 * 109.47357 * 119.99792 * 3 2 1 33 33 H 1.08001 * 120.03464 * 0.03325 * 5 4 2 34 34 H 1.07994 * 119.96045 * 179.97438 * 6 5 4 35 35 H 1.08997 * 109.47372 * 329.99855 * 8 7 6 36 36 H 1.08999 * 109.46908 * 209.99889 * 8 7 6 37 37 H 0.97001 * 120.00008 * 359.97438 * 9 8 7 38 38 H 0.96995 * 120.00503 * 4.73507 * 12 10 9 39 39 H 1.08998 * 109.47069 * 64.70597 * 13 12 10 40 40 H 1.09003 * 109.47733 * 304.70710 * 13 12 10 41 41 H 0.97001 * 120.00265 * 180.02562 * 18 17 15 42 42 H 1.09000 * 117.49568 * 215.00735 * 23 14 13 43 43 H 1.08993 * 117.49839 * 0.02562 * 23 14 13 44 44 H 1.08999 * 117.49851 * 359.97438 * 24 14 13 45 45 H 1.08997 * 117.49732 * 144.97003 * 24 14 13 46 46 H 1.08000 * 119.95813 * 179.70235 * 25 7 6 47 47 H 1.08003 * 120.03671 * 180.27690 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1633 -1.2096 0.0005 5 6 1.4703 -2.4135 0.0005 6 6 2.1639 -3.6078 0.0016 7 6 3.5468 -3.6060 0.0021 8 6 4.3002 -4.9111 0.0027 9 7 4.5450 -5.3343 -1.3783 10 6 5.2071 -6.4822 -1.6240 11 8 5.5267 -7.2089 -0.7030 12 7 5.5152 -6.8245 -2.8906 13 6 6.1419 -8.1194 -3.1676 14 6 6.4915 -8.2092 -4.6544 15 6 5.3173 -8.2124 -5.5991 16 1 5.2342 -7.4504 -6.3599 17 6 4.3521 -9.1915 -5.4958 18 7 3.2620 -9.1201 -6.2280 19 14 4.5927 -10.6195 -4.3157 20 1 3.9342 -10.3086 -3.0216 21 1 3.9907 -11.8473 -4.8951 22 1 6.0445 -10.8379 -4.0925 23 6 7.7726 -7.5156 -5.1221 24 6 7.7137 -9.0432 -5.0438 25 6 4.2398 -2.4093 0.0074 26 6 3.5524 -1.2115 0.0007 27 1 -0.3634 0.0001 1.0276 28 1 -0.3633 0.8901 -0.5139 29 1 -0.3634 -0.8899 -0.5138 30 1 2.8243 1.3264 -0.8900 31 1 1.4893 2.0972 -0.0005 32 1 2.8242 1.3265 0.8900 33 1 0.3903 -2.4156 -0.0004 34 1 1.6257 -4.5441 0.0020 35 1 3.7110 -5.6706 0.5165 36 1 5.2524 -4.7806 0.5169 37 1 4.2298 -4.7888 -2.1158 38 1 5.3220 -6.2136 -3.6188 39 1 5.4503 -8.9208 -2.9079 40 1 7.0510 -8.2175 -2.5742 41 1 2.5827 -9.8088 -6.1550 42 1 7.7660 -7.0616 -6.1131 43 1 8.3665 -6.9957 -4.3705 44 1 8.2690 -9.5276 -4.2406 45 1 7.6683 -9.5946 -5.9829 46 1 5.3198 -2.4115 0.0126 47 1 4.0943 -0.2772 0.0002 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000797412518.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:29:12 Heat of formation + Delta-G solvation = 11.327951 kcal Electronic energy + Delta-G solvation = -25711.875676 eV Core-core repulsion = 22087.739924 eV Total energy + Delta-G solvation = -3624.135752 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.11338 -40.46970 -38.80118 -37.57045 -35.37287 -34.90679 -34.27670 -32.06527 -31.52652 -28.99019 -28.70871 -27.56408 -26.42866 -24.35751 -23.27763 -23.18374 -21.79858 -21.38195 -21.08849 -19.38022 -18.55317 -18.12376 -17.18696 -17.14131 -16.87481 -16.23711 -16.05104 -15.91627 -15.62529 -15.37475 -15.06908 -14.90872 -14.81678 -14.57993 -14.41273 -14.17141 -13.89812 -13.46396 -13.39821 -13.36248 -13.00300 -12.98809 -12.79159 -12.60052 -12.27714 -12.14841 -12.05351 -11.69695 -11.53516 -11.35176 -11.03272 -10.69923 -10.68509 -10.36559 -10.24902 -9.83905 -9.59720 -8.31633 -8.20884 -6.33180 0.49995 0.54117 1.31775 1.38108 1.47829 1.90622 2.22214 2.25055 2.34107 2.89820 2.99924 3.34756 3.60952 3.86449 3.90381 4.04250 4.08469 4.20589 4.28839 4.32334 4.49488 4.50400 4.52421 4.54106 4.55925 4.68799 4.74756 4.80901 4.82554 4.89123 4.90652 4.94252 4.94881 5.08678 5.16295 5.27512 5.36081 5.43264 5.52183 5.54492 5.66035 5.70500 5.79107 5.91747 6.13337 6.30813 6.35427 6.53085 6.72326 7.19583 7.34173 7.64955 8.82746 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.017949 B = 0.002568 C = 0.002490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1559.562398 B =10902.059961 C =11240.835772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.644 5.644 3 C 0.091 3.909 4 C 0.212 3.788 5 C -0.208 4.208 6 C -0.058 4.058 7 C -0.172 4.172 8 C 0.193 3.807 9 N -0.731 5.731 10 C 0.697 3.303 11 O -0.643 6.643 12 N -0.719 5.719 13 C 0.178 3.822 14 C -0.042 4.042 15 C -0.474 4.474 16 H 0.047 0.953 17 C 0.036 3.964 18 N -0.938 5.938 19 Si 0.919 3.081 20 H -0.292 1.292 21 H -0.296 1.296 22 H -0.229 1.229 23 C -0.154 4.154 24 C -0.184 4.184 25 C -0.052 4.052 26 C -0.203 4.203 27 H 0.053 0.947 28 H 0.084 0.916 29 H 0.067 0.933 30 H 0.055 0.945 31 H 0.092 0.908 32 H 0.057 0.943 33 H 0.134 0.866 34 H 0.123 0.877 35 H 0.056 0.944 36 H 0.067 0.933 37 H 0.406 0.594 38 H 0.408 0.592 39 H 0.026 0.974 40 H 0.059 0.941 41 H 0.264 0.736 42 H 0.086 0.914 43 H 0.099 0.901 44 H 0.092 0.908 45 H 0.083 0.917 46 H 0.133 0.867 47 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.155 21.595 13.657 25.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.355 5.355 3 C -0.052 4.052 4 C 0.108 3.892 5 C -0.230 4.230 6 C -0.078 4.078 7 C -0.174 4.174 8 C 0.070 3.930 9 N -0.387 5.387 10 C 0.396 3.604 11 O -0.526 6.526 12 N -0.373 5.373 13 C 0.053 3.947 14 C -0.043 4.043 15 C -0.511 4.511 16 H 0.065 0.935 17 C -0.163 4.163 18 N -0.577 5.577 19 Si 0.746 3.254 20 H -0.219 1.219 21 H -0.224 1.224 22 H -0.151 1.151 23 C -0.191 4.191 24 C -0.222 4.222 25 C -0.071 4.071 26 C -0.226 4.226 27 H 0.071 0.929 28 H 0.102 0.898 29 H 0.085 0.915 30 H 0.073 0.927 31 H 0.110 0.890 32 H 0.075 0.925 33 H 0.152 0.848 34 H 0.141 0.859 35 H 0.074 0.926 36 H 0.086 0.914 37 H 0.242 0.758 38 H 0.244 0.756 39 H 0.044 0.956 40 H 0.078 0.922 41 H 0.073 0.927 42 H 0.105 0.895 43 H 0.117 0.883 44 H 0.110 0.890 45 H 0.102 0.898 46 H 0.151 0.849 47 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -2.134 21.051 14.439 25.616 hybrid contribution -0.739 -0.581 -0.427 1.033 sum -2.873 20.470 14.012 24.972 Atomic orbital electron populations 1.21818 0.78481 1.03556 1.01732 1.46626 1.05927 1.03272 1.79671 1.21758 0.97587 0.84420 1.01426 1.18073 0.91671 0.86354 0.93070 1.20824 1.00346 0.90880 1.10975 1.20956 0.93474 0.97979 0.95361 1.19485 0.93757 0.93776 1.10430 1.19852 0.98988 0.92740 0.81458 1.45171 1.60453 1.23429 1.09652 1.16197 0.79056 0.81949 0.83163 1.90826 1.62351 1.54663 1.44811 1.44916 1.65169 1.20631 1.06566 1.20744 0.95412 0.83494 0.95002 1.19447 0.89183 1.04563 0.91138 1.20384 1.04382 1.11598 1.14781 0.93507 1.25519 0.94326 0.99878 0.96576 1.70002 1.09082 1.35610 1.43010 0.86225 0.81060 0.79568 0.78508 1.21902 1.22365 1.15143 1.22816 0.99860 0.94313 1.02070 1.23110 1.02583 0.93979 1.02526 1.20970 1.00166 0.91016 0.94951 1.20804 0.92105 0.98957 1.10696 0.92868 0.89758 0.91471 0.92674 0.88969 0.92472 0.84819 0.85942 0.92558 0.91421 0.75809 0.75633 0.95600 0.92239 0.92663 0.89537 0.88291 0.88980 0.89822 0.84884 0.84534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.87 10.16 127.77 1.30 2.17 16 2 N -0.64 -9.18 3.41 -747.27 -2.55 -11.72 16 3 C 0.09 0.84 9.40 127.77 1.20 2.04 16 4 C 0.21 3.95 6.55 38.21 0.25 4.20 16 5 C -0.21 -4.09 9.21 22.40 0.21 -3.88 16 6 C -0.06 -1.28 9.69 22.25 0.22 -1.06 16 7 C -0.17 -3.86 5.25 -19.84 -0.10 -3.96 16 8 C 0.19 5.17 5.80 85.63 0.50 5.66 16 9 N -0.73 -22.13 5.55 -482.31 -2.68 -24.81 16 10 C 0.70 27.29 8.55 179.05 1.53 28.82 16 11 O -0.64 -29.88 16.33 -3.98 -0.07 -29.95 16 12 N -0.72 -28.46 5.48 -478.54 -2.62 -31.08 16 13 C 0.18 7.74 5.08 86.38 0.44 8.17 16 14 C -0.04 -1.83 0.85 -52.93 -0.04 -1.88 16 15 C -0.47 -25.20 9.19 25.60 0.24 -24.96 16 16 H 0.05 2.73 8.06 -2.91 -0.02 2.70 16 17 C 0.04 2.03 5.46 84.66 0.46 2.49 16 18 N -0.94 -56.90 13.96 21.45 0.30 -56.60 16 19 Si 0.92 45.40 24.69 68.60 1.69 47.09 16 20 H -0.29 -15.00 6.96 99.48 0.69 -14.31 16 21 H -0.30 -14.60 7.11 99.48 0.71 -13.90 16 22 H -0.23 -10.30 6.12 99.48 0.61 -9.69 16 23 C -0.15 -5.54 9.96 30.62 0.30 -5.24 16 24 C -0.18 -7.09 8.70 30.62 0.27 -6.82 16 25 C -0.05 -1.02 9.69 22.25 0.22 -0.81 16 26 C -0.20 -3.69 9.31 22.40 0.21 -3.48 16 27 H 0.05 0.48 8.14 -2.39 -0.02 0.46 16 28 H 0.08 0.54 7.92 -2.38 -0.02 0.52 16 29 H 0.07 0.72 6.20 -2.39 -0.01 0.71 16 30 H 0.05 0.52 7.95 -2.38 -0.02 0.50 16 31 H 0.09 0.48 7.79 -2.39 -0.02 0.46 16 32 H 0.06 0.50 7.95 -2.39 -0.02 0.48 16 33 H 0.13 2.20 6.14 -2.91 -0.02 2.19 16 34 H 0.12 2.61 8.06 -2.91 -0.02 2.59 16 35 H 0.06 1.64 8.08 -2.39 -0.02 1.62 16 36 H 0.07 1.80 8.08 -2.39 -0.02 1.78 16 37 H 0.41 10.77 8.49 -92.71 -0.79 9.98 16 38 H 0.41 15.08 8.36 -92.71 -0.78 14.31 16 39 H 0.03 1.26 4.25 -2.39 -0.01 1.25 16 40 H 0.06 2.45 8.06 -2.39 -0.02 2.43 16 41 H 0.26 15.30 8.31 -92.71 -0.77 14.53 16 42 H 0.09 3.11 8.14 -2.39 -0.02 3.09 16 43 H 0.10 3.11 8.14 -2.39 -0.02 3.09 16 44 H 0.09 3.18 8.14 -2.39 -0.02 3.17 16 45 H 0.08 3.32 8.14 -2.39 -0.02 3.30 16 46 H 0.13 2.27 8.06 -2.91 -0.02 2.25 16 47 H 0.14 1.95 6.73 -2.91 -0.02 1.93 16 Total: -1.00 -70.72 381.66 0.57 -70.15 By element: Atomic # 1 Polarization: 36.13 SS G_CDS: -0.69 Total: 35.44 kcal Atomic # 6 Polarization: -5.71 SS G_CDS: 7.18 Total: 1.47 kcal Atomic # 7 Polarization: -116.66 SS G_CDS: -7.55 Total: -124.21 kcal Atomic # 8 Polarization: -29.88 SS G_CDS: -0.07 Total: -29.95 kcal Atomic # 14 Polarization: 45.40 SS G_CDS: 1.69 Total: 47.09 kcal Total: -70.72 0.57 -70.15 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000797412518.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.480 kcal (2) G-P(sol) polarization free energy of solvation -70.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.152 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds