Wall clock time and date at job start Tue Mar 31 2020 11:19:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46958 * 111.00165 * 2 1 4 4 C 1.53045 * 109.36555 * 183.19088 * 3 2 1 5 5 N 1.46954 * 109.36392 * 301.59617 * 4 3 2 6 6 C 1.39891 * 111.00311 * 183.18792 * 5 4 3 7 7 C 1.38888 * 120.00897 * 180.02562 * 6 5 4 8 8 C 1.38065 * 119.99862 * 179.97438 * 7 6 5 9 9 C 1.38848 * 120.00374 * 359.97438 * 8 7 6 10 10 N 1.40148 * 119.99504 * 180.02562 * 9 8 7 11 11 C 1.34775 * 119.99826 * 35.08101 * 10 9 8 12 12 O 1.21292 * 120.00401 * 355.65545 * 11 10 9 13 13 C 1.50705 * 119.99816 * 175.65127 * 11 10 9 14 14 C 1.53000 * 109.47032 * 180.02562 * 13 11 10 15 15 C 1.50697 * 109.47208 * 180.02562 * 14 13 11 16 16 H 1.08004 * 120.00165 * 359.97438 * 15 14 13 17 17 C 1.37876 * 120.00265 * 179.97438 * 15 14 13 18 18 N 1.31516 * 119.99823 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 120.00184 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.47287 * 59.99852 * 19 17 15 21 21 H 1.48496 * 109.47160 * 180.02562 * 19 17 15 22 22 H 1.48504 * 109.46890 * 300.00142 * 19 17 15 23 23 C 1.38859 * 120.00736 * 0.27250 * 9 8 7 24 24 C 1.38061 * 120.00219 * 359.49806 * 23 9 8 25 25 C 1.46961 * 110.88167 * 59.32183 * 5 4 3 26 26 C 1.46954 * 111.00117 * 123.79849 * 2 1 3 27 27 H 1.08997 * 109.47059 * 59.99873 * 1 2 3 28 28 H 1.08996 * 109.47034 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47126 * 300.00053 * 1 2 3 30 30 H 1.08996 * 109.48710 * 63.22085 * 3 2 1 31 31 H 1.09004 * 109.50400 * 303.16467 * 3 2 1 32 32 H 1.09003 * 109.49197 * 181.62942 * 4 3 2 33 33 H 1.09002 * 109.50852 * 61.57333 * 4 3 2 34 34 H 1.08004 * 119.99742 * 359.97438 * 7 6 5 35 35 H 1.07994 * 119.99523 * 179.97438 * 8 7 6 36 36 H 0.97000 * 120.00156 * 215.35098 * 10 9 8 37 37 H 1.09007 * 109.47054 * 299.99889 * 13 11 10 38 38 H 1.08996 * 109.47222 * 59.99613 * 13 11 10 39 39 H 1.09007 * 109.47094 * 299.99845 * 14 13 11 40 40 H 1.08996 * 109.47449 * 59.99732 * 14 13 11 41 41 H 0.97000 * 120.00033 * 180.02562 * 18 17 15 42 42 H 1.08005 * 119.99397 * 179.72212 * 23 9 8 43 43 H 1.08004 * 119.99944 * 180.25248 * 24 23 9 44 44 H 1.09005 * 109.48823 * 60.64641 * 25 5 4 45 45 H 1.08995 * 109.49203 * 180.71082 * 25 5 4 46 46 H 1.09001 * 109.49100 * 296.78171 * 26 2 1 47 47 H 1.09003 * 109.48733 * 56.84022 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9957 1.3720 0.0000 4 6 3.5234 1.3291 -0.0804 5 7 4.0501 0.5659 1.0597 6 6 5.4490 0.5658 1.0597 7 6 6.1436 -0.1037 2.0589 8 6 7.5243 -0.1040 2.0584 9 6 8.2184 0.5644 1.0588 10 7 9.6199 0.5635 1.0581 11 6 10.2932 -0.5258 1.4784 12 8 9.6889 -1.4752 1.9309 13 6 11.7969 -0.5642 1.3861 14 6 12.3069 -1.9024 1.9247 15 6 13.8106 -1.9406 1.8330 16 1 14.3487 -1.0952 1.4304 17 6 14.4994 -3.0549 2.2631 18 7 13.8441 -4.0846 2.7529 19 14 16.3634 -3.1019 2.1500 20 1 16.9363 -1.9932 2.9549 21 1 16.8584 -4.4008 2.6727 22 1 16.7773 -2.9494 0.7320 23 6 7.5242 1.2381 0.0626 24 6 6.1436 1.2347 0.0601 25 6 3.5235 -0.8061 1.0598 26 6 1.9957 -0.7632 1.1401 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.6938 1.8773 0.9173 31 1 1.6014 1.9132 -0.8601 32 1 3.9178 2.3448 -0.0513 33 1 3.8257 0.8481 -1.0107 34 1 5.6037 -0.6240 2.8362 35 1 8.0643 -0.6243 2.8355 36 1 10.1053 1.3481 0.7589 37 1 12.1000 -0.4528 0.3450 38 1 12.2181 0.2497 1.9762 39 1 12.0038 -2.0143 2.9658 40 1 11.8857 -2.7160 1.3343 41 1 14.3287 -4.8684 3.0558 42 1 8.0644 1.7618 -0.7123 43 1 5.6037 1.7553 -0.7170 44 1 3.8254 -1.3116 0.1424 45 1 3.9178 -1.3470 1.9200 46 1 1.6938 -0.2821 2.0704 47 1 1.6013 -1.7789 1.1110 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000812454800.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:19:54 Heat of formation + Delta-G solvation = 5.933783 kcal Electronic energy + Delta-G solvation = -25586.247958 eV Core-core repulsion = 21961.878297 eV Total energy + Delta-G solvation = -3624.369661 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.68575 -39.71721 -38.08083 -35.85521 -33.78220 -33.50291 -31.86118 -31.11534 -30.58652 -29.64618 -27.30607 -25.58784 -24.63512 -24.16566 -22.51371 -22.02313 -21.15106 -20.10668 -19.56656 -17.89760 -17.08790 -16.88776 -15.92111 -15.62652 -15.52179 -15.43333 -15.14390 -15.10837 -14.59025 -14.47002 -14.16731 -13.93430 -13.50501 -13.39063 -12.91062 -12.82316 -12.78136 -12.33732 -12.19763 -12.18382 -12.03502 -11.66299 -11.55597 -11.27182 -11.19781 -11.05501 -10.92792 -10.64118 -10.21222 -9.99650 -9.69852 -9.25617 -9.19771 -9.09542 -8.84376 -8.77239 -8.34017 -7.49147 -5.97857 -4.02615 1.33362 1.44363 3.06975 3.33595 3.34388 3.38719 3.40662 3.48605 3.54139 3.90570 4.43135 4.46059 4.58017 4.66073 4.83597 4.91831 4.93875 4.97164 5.10649 5.11279 5.14452 5.31740 5.36648 5.37092 5.40660 5.43863 5.48571 5.49237 5.56821 5.65027 5.70575 5.98691 6.06931 6.12827 6.15360 6.19143 6.48810 6.54344 6.56569 6.62579 6.81515 6.83644 6.94955 7.27563 7.70802 7.73764 7.81908 8.03939 8.35029 8.62791 9.05209 9.61055 11.12994 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.036478 B = 0.001979 C = 0.001909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 767.399771 B =14144.733801 C =14666.842613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.547 5.547 3 C 0.056 3.944 4 C 0.053 3.947 5 N -0.489 5.489 6 C 0.084 3.916 7 C -0.118 4.118 8 C -0.097 4.097 9 C 0.134 3.866 10 N -0.686 5.686 11 C 0.509 3.491 12 O -0.515 6.515 13 C -0.129 4.129 14 C 0.037 3.963 15 C -0.529 4.529 16 H 0.056 0.944 17 C 0.058 3.942 18 N -0.889 5.889 19 Si 0.894 3.106 20 H -0.277 1.277 21 H -0.287 1.287 22 H -0.277 1.277 23 C -0.126 4.126 24 C -0.151 4.151 25 C 0.058 3.942 26 C 0.055 3.945 27 H 0.069 0.931 28 H 0.069 0.931 29 H 0.026 0.974 30 H 0.043 0.957 31 H 0.082 0.918 32 H 0.086 0.914 33 H 0.054 0.946 34 H 0.125 0.875 35 H 0.143 0.857 36 H 0.407 0.593 37 H 0.083 0.917 38 H 0.083 0.917 39 H 0.024 0.976 40 H 0.024 0.976 41 H 0.262 0.738 42 H 0.124 0.876 43 H 0.126 0.874 44 H 0.053 0.947 45 H 0.088 0.912 46 H 0.044 0.956 47 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.354 13.683 -6.305 29.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.272 5.272 3 C -0.073 4.073 4 C -0.075 4.075 5 N -0.205 5.205 6 C -0.013 4.013 7 C -0.139 4.139 8 C -0.118 4.118 9 C 0.039 3.961 10 N -0.333 5.333 11 C 0.299 3.701 12 O -0.389 6.389 13 C -0.169 4.169 14 C -0.001 4.001 15 C -0.567 4.567 16 H 0.074 0.926 17 C -0.144 4.144 18 N -0.528 5.528 19 Si 0.722 3.278 20 H -0.202 1.202 21 H -0.213 1.213 22 H -0.202 1.202 23 C -0.147 4.147 24 C -0.172 4.172 25 C -0.068 4.068 26 C -0.073 4.073 27 H 0.087 0.913 28 H 0.088 0.912 29 H 0.045 0.955 30 H 0.062 0.938 31 H 0.100 0.900 32 H 0.105 0.895 33 H 0.072 0.928 34 H 0.143 0.857 35 H 0.161 0.839 36 H 0.243 0.757 37 H 0.101 0.899 38 H 0.101 0.899 39 H 0.043 0.957 40 H 0.043 0.957 41 H 0.071 0.929 42 H 0.142 0.858 43 H 0.144 0.856 44 H 0.071 0.929 45 H 0.106 0.894 46 H 0.062 0.938 47 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -25.767 12.742 -5.899 29.344 hybrid contribution 1.216 0.438 -0.151 1.301 sum -24.551 13.180 -6.050 28.514 Atomic orbital electron populations 1.22346 0.86948 1.02240 1.00737 1.62164 1.08024 1.13948 1.43024 1.22202 0.94324 0.89432 1.01300 1.22324 0.94184 0.98939 0.92024 1.59412 1.05192 1.14199 1.41740 1.18825 0.87596 0.99386 0.95489 1.20669 0.93499 1.01305 0.98399 1.21261 0.93470 0.99099 0.97983 1.17836 0.83393 0.99881 0.95040 1.43930 1.04121 1.18191 1.67010 1.21809 0.91779 0.80840 0.75706 1.90662 1.70246 1.35494 1.42502 1.21906 0.87266 1.04595 1.03117 1.18911 0.95017 0.88995 0.97151 1.21165 0.91732 1.01583 1.42253 0.92605 1.25025 0.98440 0.95654 0.95237 1.69984 1.35572 1.05563 1.41644 0.86637 0.85626 0.77220 0.78354 1.20232 1.21274 1.20249 1.20756 0.93914 1.02499 0.97568 1.20992 0.93836 1.03967 0.98392 1.22325 0.94057 0.87978 1.02440 1.22218 0.94335 0.98781 0.91956 0.91266 0.91234 0.95531 0.93829 0.89970 0.89526 0.92757 0.85727 0.83914 0.75728 0.89885 0.89885 0.95725 0.95738 0.92855 0.85826 0.85587 0.92903 0.89369 0.93761 0.89837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 9.60 60.07 0.58 0.73 16 2 N -0.55 -4.37 4.97 -242.76 -1.21 -5.57 16 3 C 0.06 0.41 5.62 -3.77 -0.02 0.39 16 4 C 0.05 0.45 4.30 -3.77 -0.02 0.43 16 5 N -0.49 -5.05 4.76 -170.90 -0.81 -5.87 16 6 C 0.08 1.01 5.64 -83.70 -0.47 0.54 16 7 C -0.12 -1.57 9.19 -39.40 -0.36 -1.93 16 8 C -0.10 -1.51 8.69 -39.42 -0.34 -1.85 16 9 C 0.13 1.94 6.30 -83.60 -0.53 1.42 16 10 N -0.69 -9.94 5.34 -9.81 -0.05 -9.99 16 11 C 0.51 9.63 7.67 -10.98 -0.08 9.55 16 12 O -0.52 -11.77 13.43 5.55 0.07 -11.70 16 13 C -0.13 -2.54 5.64 -27.88 -0.16 -2.70 16 14 C 0.04 0.98 4.26 -27.88 -0.12 0.86 16 15 C -0.53 -14.86 9.11 -34.44 -0.31 -15.18 16 16 H 0.06 1.47 7.74 -52.48 -0.41 1.06 16 17 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 18 N -0.89 -27.27 13.29 55.43 0.74 -26.53 16 19 Si 0.89 21.56 29.54 -169.99 -5.02 16.54 16 20 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 21 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 22 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 23 C -0.13 -1.51 9.96 -39.42 -0.39 -1.90 16 24 C -0.15 -1.69 8.81 -39.41 -0.35 -2.04 16 25 C 0.06 0.55 5.38 -3.76 -0.02 0.53 16 26 C 0.06 0.44 5.62 -3.77 -0.02 0.42 16 27 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 28 H 0.07 0.37 8.13 -51.93 -0.42 -0.05 16 29 H 0.03 0.15 8.14 -51.93 -0.42 -0.27 16 30 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.09 0.65 7.17 -51.93 -0.37 0.28 16 33 H 0.05 0.49 7.58 -51.93 -0.39 0.10 16 34 H 0.12 1.49 7.18 -52.48 -0.38 1.11 16 35 H 0.14 2.52 6.23 -52.49 -0.33 2.19 16 36 H 0.41 4.41 8.82 -40.82 -0.36 4.05 16 37 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 38 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 39 H 0.02 0.71 8.10 -51.93 -0.42 0.29 16 40 H 0.02 0.71 8.10 -51.93 -0.42 0.29 16 41 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 42 H 0.12 1.18 8.06 -52.48 -0.42 0.76 16 43 H 0.13 1.13 5.80 -52.48 -0.30 0.82 16 44 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 45 H 0.09 0.82 6.82 -51.93 -0.35 0.46 16 46 H 0.04 0.37 8.14 -51.93 -0.42 -0.06 16 47 H 0.08 0.58 8.13 -51.93 -0.42 0.15 16 LS Contribution 375.20 15.07 5.65 5.65 Total: -1.00 -33.87 375.20 -10.86 -44.73 By element: Atomic # 1 Polarization: 9.41 SS G_CDS: -7.52 Total: 1.89 kcal Atomic # 6 Polarization: -6.44 SS G_CDS: -2.72 Total: -9.16 kcal Atomic # 7 Polarization: -46.63 SS G_CDS: -1.34 Total: -47.96 kcal Atomic # 8 Polarization: -11.77 SS G_CDS: 0.07 Total: -11.70 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -33.87 -10.86 -44.73 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812454800.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.665 kcal (2) G-P(sol) polarization free energy of solvation -33.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.732 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds