Wall clock time and date at job start Tue Mar 31 2020 11:19:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46958 * 111.00165 * 2 1 4 4 C 1.53045 * 109.36555 * 183.19088 * 3 2 1 5 5 N 1.46954 * 109.36392 * 301.59617 * 4 3 2 6 6 C 1.39891 * 111.00311 * 183.18792 * 5 4 3 7 7 C 1.38888 * 120.00897 * 180.02562 * 6 5 4 8 8 C 1.38065 * 119.99862 * 179.97438 * 7 6 5 9 9 C 1.38848 * 120.00374 * 359.97438 * 8 7 6 10 10 N 1.40148 * 119.99504 * 180.02562 * 9 8 7 11 11 C 1.34775 * 119.99826 * 35.08101 * 10 9 8 12 12 O 1.21292 * 120.00401 * 355.65545 * 11 10 9 13 13 C 1.50705 * 119.99816 * 175.65127 * 11 10 9 14 14 C 1.53000 * 109.47032 * 180.02562 * 13 11 10 15 15 C 1.50697 * 109.47208 * 180.02562 * 14 13 11 16 16 H 1.08004 * 120.00165 * 359.97438 * 15 14 13 17 17 C 1.37876 * 120.00265 * 179.97438 * 15 14 13 18 18 N 1.31516 * 119.99823 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 120.00184 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.47287 * 59.99852 * 19 17 15 21 21 H 1.48496 * 109.47160 * 180.02562 * 19 17 15 22 22 H 1.48504 * 109.46890 * 300.00142 * 19 17 15 23 23 C 1.38859 * 120.00736 * 0.27250 * 9 8 7 24 24 C 1.38061 * 120.00219 * 359.49806 * 23 9 8 25 25 C 1.46961 * 110.88167 * 59.32183 * 5 4 3 26 26 C 1.46954 * 111.00117 * 123.79849 * 2 1 3 27 27 H 1.08997 * 109.47059 * 59.99873 * 1 2 3 28 28 H 1.08996 * 109.47034 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47126 * 300.00053 * 1 2 3 30 30 H 1.08996 * 109.48710 * 63.22085 * 3 2 1 31 31 H 1.09004 * 109.50400 * 303.16467 * 3 2 1 32 32 H 1.09003 * 109.49197 * 181.62942 * 4 3 2 33 33 H 1.09002 * 109.50852 * 61.57333 * 4 3 2 34 34 H 1.08004 * 119.99742 * 359.97438 * 7 6 5 35 35 H 1.07994 * 119.99523 * 179.97438 * 8 7 6 36 36 H 0.97000 * 120.00156 * 215.35098 * 10 9 8 37 37 H 1.09007 * 109.47054 * 299.99889 * 13 11 10 38 38 H 1.08996 * 109.47222 * 59.99613 * 13 11 10 39 39 H 1.09007 * 109.47094 * 299.99845 * 14 13 11 40 40 H 1.08996 * 109.47449 * 59.99732 * 14 13 11 41 41 H 0.97000 * 120.00033 * 180.02562 * 18 17 15 42 42 H 1.08005 * 119.99397 * 179.72212 * 23 9 8 43 43 H 1.08004 * 119.99944 * 180.25248 * 24 23 9 44 44 H 1.09005 * 109.48823 * 60.64641 * 25 5 4 45 45 H 1.08995 * 109.49203 * 180.71082 * 25 5 4 46 46 H 1.09001 * 109.49100 * 296.78171 * 26 2 1 47 47 H 1.09003 * 109.48733 * 56.84022 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9957 1.3720 0.0000 4 6 3.5234 1.3291 -0.0804 5 7 4.0501 0.5659 1.0597 6 6 5.4490 0.5658 1.0597 7 6 6.1436 -0.1037 2.0589 8 6 7.5243 -0.1040 2.0584 9 6 8.2184 0.5644 1.0588 10 7 9.6199 0.5635 1.0581 11 6 10.2932 -0.5258 1.4784 12 8 9.6889 -1.4752 1.9309 13 6 11.7969 -0.5642 1.3861 14 6 12.3069 -1.9024 1.9247 15 6 13.8106 -1.9406 1.8330 16 1 14.3487 -1.0952 1.4304 17 6 14.4994 -3.0549 2.2631 18 7 13.8441 -4.0846 2.7529 19 14 16.3634 -3.1019 2.1500 20 1 16.9363 -1.9932 2.9549 21 1 16.8584 -4.4008 2.6727 22 1 16.7773 -2.9494 0.7320 23 6 7.5242 1.2381 0.0626 24 6 6.1436 1.2347 0.0601 25 6 3.5235 -0.8061 1.0598 26 6 1.9957 -0.7632 1.1401 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.6938 1.8773 0.9173 31 1 1.6014 1.9132 -0.8601 32 1 3.9178 2.3448 -0.0513 33 1 3.8257 0.8481 -1.0107 34 1 5.6037 -0.6240 2.8362 35 1 8.0643 -0.6243 2.8355 36 1 10.1053 1.3481 0.7589 37 1 12.1000 -0.4528 0.3450 38 1 12.2181 0.2497 1.9762 39 1 12.0038 -2.0143 2.9658 40 1 11.8857 -2.7160 1.3343 41 1 14.3287 -4.8684 3.0558 42 1 8.0644 1.7618 -0.7123 43 1 5.6037 1.7553 -0.7170 44 1 3.8254 -1.3116 0.1424 45 1 3.9178 -1.3470 1.9200 46 1 1.6938 -0.2821 2.0704 47 1 1.6013 -1.7789 1.1110 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000812454800.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:19:53 Heat of formation + Delta-G solvation = -18.071397 kcal Electronic energy + Delta-G solvation = -25587.288901 eV Core-core repulsion = 21961.878297 eV Total energy + Delta-G solvation = -3625.410604 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.70899 -40.85527 -39.07274 -36.81783 -35.57003 -34.94136 -33.02583 -32.64934 -31.46578 -30.58479 -28.44117 -27.23707 -25.41514 -24.94754 -23.96509 -23.11366 -22.33733 -21.22994 -20.69345 -18.98367 -18.72904 -18.01273 -17.55082 -16.76790 -16.47617 -16.40037 -16.22288 -16.07880 -15.74250 -15.52015 -15.27757 -14.88311 -14.82940 -14.53143 -14.28031 -14.14397 -13.69062 -13.52855 -13.41545 -13.24784 -13.01691 -12.77845 -12.68145 -12.51368 -12.43683 -12.30502 -11.96099 -11.91481 -11.84946 -11.64504 -11.34067 -11.28212 -10.71329 -10.55809 -10.18992 -9.90501 -9.36808 -8.50900 -8.17861 -6.32019 0.27663 0.42388 1.42536 1.46976 1.54658 1.64283 2.13097 2.44177 2.61773 2.91627 2.93807 3.15195 3.74363 3.83662 3.96686 3.99441 4.00774 4.14766 4.22460 4.31754 4.38192 4.44065 4.48245 4.53213 4.55299 4.60112 4.63010 4.65553 4.75850 4.82020 4.82694 4.94248 5.01022 5.03033 5.08129 5.10243 5.24508 5.42124 5.48708 5.54101 5.62240 5.78972 5.85202 5.93253 6.03584 6.06321 6.16918 6.31240 6.52264 6.86189 7.25360 7.38262 8.94505 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.036478 B = 0.001979 C = 0.001909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 767.399771 B =14144.733801 C =14666.842613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.559 5.559 3 C 0.058 3.942 4 C 0.050 3.950 5 N -0.494 5.494 6 C 0.090 3.910 7 C -0.129 4.129 8 C -0.120 4.120 9 C 0.106 3.894 10 N -0.662 5.662 11 C 0.510 3.490 12 O -0.567 6.567 13 C -0.116 4.116 14 C 0.041 3.959 15 C -0.544 4.544 16 H 0.078 0.922 17 C -0.008 4.008 18 N -0.938 5.938 19 Si 0.974 3.026 20 H -0.262 1.262 21 H -0.289 1.289 22 H -0.262 1.262 23 C -0.111 4.111 24 C -0.147 4.147 25 C 0.058 3.942 26 C 0.060 3.940 27 H 0.079 0.921 28 H 0.073 0.927 29 H 0.028 0.972 30 H 0.039 0.961 31 H 0.101 0.899 32 H 0.100 0.900 33 H 0.053 0.947 34 H 0.127 0.873 35 H 0.109 0.891 36 H 0.428 0.572 37 H 0.109 0.891 38 H 0.110 0.890 39 H -0.017 1.017 40 H -0.018 1.018 41 H 0.263 0.737 42 H 0.157 0.843 43 H 0.157 0.843 44 H 0.041 0.959 45 H 0.083 0.917 46 H 0.041 0.959 47 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.621 16.468 -8.510 31.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.284 5.284 3 C -0.070 4.070 4 C -0.076 4.076 5 N -0.210 5.210 6 C -0.008 4.008 7 C -0.150 4.150 8 C -0.141 4.141 9 C 0.011 3.989 10 N -0.309 5.309 11 C 0.300 3.700 12 O -0.445 6.445 13 C -0.156 4.156 14 C 0.004 3.996 15 C -0.582 4.582 16 H 0.096 0.904 17 C -0.205 4.205 18 N -0.578 5.578 19 Si 0.798 3.202 20 H -0.187 1.187 21 H -0.215 1.215 22 H -0.187 1.187 23 C -0.132 4.132 24 C -0.168 4.168 25 C -0.067 4.067 26 C -0.068 4.068 27 H 0.098 0.902 28 H 0.092 0.908 29 H 0.046 0.954 30 H 0.057 0.943 31 H 0.119 0.881 32 H 0.118 0.882 33 H 0.071 0.929 34 H 0.145 0.855 35 H 0.127 0.873 36 H 0.267 0.733 37 H 0.128 0.872 38 H 0.128 0.872 39 H 0.002 0.998 40 H 0.001 0.999 41 H 0.071 0.929 42 H 0.174 0.826 43 H 0.175 0.825 44 H 0.060 0.940 45 H 0.101 0.899 46 H 0.059 0.941 47 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -26.060 15.604 -8.136 31.446 hybrid contribution 1.119 -0.400 0.528 1.300 sum -24.942 15.204 -7.608 30.185 Atomic orbital electron populations 1.22384 0.85683 1.02790 1.01308 1.62195 1.09255 1.14248 1.42749 1.22226 0.93527 0.89333 1.01933 1.22450 0.95016 0.99175 0.91000 1.59399 1.04138 1.14671 1.42798 1.18988 0.88601 0.98351 0.94889 1.20692 0.92807 1.02114 0.99375 1.21115 0.94446 1.00214 0.98322 1.18005 0.83073 1.01552 0.96222 1.43506 1.04423 1.17470 1.65514 1.21594 0.91554 0.81311 0.75547 1.90661 1.70981 1.37750 1.45082 1.21658 0.88027 1.01274 1.04633 1.18698 0.94957 0.91646 0.94338 1.21686 0.92513 1.02239 1.41727 0.90430 1.26147 1.04515 0.95174 0.94672 1.70173 1.38045 1.06483 1.43053 0.85366 0.78297 0.77394 0.79132 1.18663 1.21453 1.18682 1.21054 0.94261 1.00983 0.96913 1.21365 0.93737 1.03280 0.98461 1.22320 0.95274 0.87494 1.01658 1.22162 0.93053 0.99513 0.92058 0.90229 0.90781 0.95358 0.94262 0.88095 0.88172 0.92885 0.85510 0.87266 0.73322 0.87247 0.87224 0.99829 0.99917 0.92887 0.82588 0.82530 0.94024 0.89850 0.94067 0.88858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 9.60 127.69 1.23 1.48 16 2 N -0.56 -7.87 4.97 -921.96 -4.58 -12.45 16 3 C 0.06 0.72 5.62 86.31 0.49 1.20 16 4 C 0.05 0.72 4.30 86.31 0.37 1.10 16 5 N -0.49 -9.57 4.76 -694.61 -3.31 -12.87 16 6 C 0.09 2.06 5.64 38.17 0.22 2.27 16 7 C -0.13 -3.56 9.19 22.38 0.21 -3.36 16 8 C -0.12 -3.93 8.69 22.37 0.19 -3.73 16 9 C 0.11 3.04 6.30 38.11 0.24 3.28 16 10 N -0.66 -18.65 5.34 -303.35 -1.62 -20.27 16 11 C 0.51 19.77 7.67 87.66 0.67 20.44 16 12 O -0.57 -27.74 13.43 -3.07 -0.04 -27.78 16 13 C -0.12 -4.57 5.64 29.85 0.17 -4.40 16 14 C 0.04 2.29 4.26 29.85 0.13 2.41 16 15 C -0.54 -30.79 9.11 25.60 0.23 -30.56 16 16 H 0.08 3.96 7.74 -2.91 -0.02 3.94 16 17 C -0.01 -0.44 5.46 84.65 0.46 0.02 16 18 N -0.94 -59.66 13.29 21.45 0.28 -59.38 16 19 Si 0.97 44.24 29.54 68.60 2.03 46.26 16 20 H -0.26 -11.21 7.11 99.48 0.71 -10.50 16 21 H -0.29 -13.07 7.11 99.48 0.71 -12.36 16 22 H -0.26 -11.22 7.11 99.48 0.71 -10.51 16 23 C -0.11 -2.37 9.96 22.38 0.22 -2.15 16 24 C -0.15 -2.92 8.81 22.38 0.20 -2.72 16 25 C 0.06 1.09 5.38 86.31 0.46 1.56 16 26 C 0.06 0.91 5.62 86.31 0.49 1.39 16 27 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 28 H 0.07 0.66 8.13 -2.39 -0.02 0.64 16 29 H 0.03 0.27 8.14 -2.39 -0.02 0.25 16 30 H 0.04 0.53 8.14 -2.39 -0.02 0.51 16 31 H 0.10 0.89 8.14 -2.38 -0.02 0.87 16 32 H 0.10 1.17 7.17 -2.39 -0.02 1.15 16 33 H 0.05 0.80 7.58 -2.39 -0.02 0.78 16 34 H 0.13 3.27 7.18 -2.91 -0.02 3.25 16 35 H 0.11 4.28 6.23 -2.91 -0.02 4.26 16 36 H 0.43 8.23 8.82 -92.71 -0.82 7.41 16 37 H 0.11 3.72 8.14 -2.38 -0.02 3.70 16 38 H 0.11 3.71 8.14 -2.39 -0.02 3.69 16 39 H -0.02 -1.05 8.10 -2.38 -0.02 -1.07 16 40 H -0.02 -1.11 8.10 -2.39 -0.02 -1.13 16 41 H 0.26 15.69 8.31 -92.71 -0.77 14.92 16 42 H 0.16 2.29 8.06 -2.91 -0.02 2.27 16 43 H 0.16 2.15 5.80 -2.91 -0.02 2.13 16 44 H 0.04 0.87 8.14 -2.38 -0.02 0.85 16 45 H 0.08 1.60 6.82 -2.39 -0.02 1.58 16 46 H 0.04 0.64 8.14 -2.39 -0.02 0.62 16 47 H 0.09 1.19 8.13 -2.39 -0.02 1.18 16 Total: -1.00 -78.07 375.20 -1.12 -79.19 By element: Atomic # 1 Polarization: 18.91 SS G_CDS: 0.15 Total: 19.05 kcal Atomic # 6 Polarization: -17.73 SS G_CDS: 5.97 Total: -11.76 kcal Atomic # 7 Polarization: -95.75 SS G_CDS: -9.22 Total: -104.97 kcal Atomic # 8 Polarization: -27.74 SS G_CDS: -0.04 Total: -27.78 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 2.03 Total: 46.26 kcal Total: -78.07 -1.12 -79.19 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812454800.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.120 kcal (2) G-P(sol) polarization free energy of solvation -78.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.191 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds