Wall clock time and date at job start Tue Mar 31 2020 11:19:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46964 * 111.00380 * 2 1 4 4 C 1.53050 * 109.36694 * 183.18696 * 3 2 1 5 5 N 1.46958 * 109.36503 * 301.59859 * 4 3 2 6 6 C 1.39893 * 111.00018 * 183.18810 * 5 4 3 7 7 C 1.38715 * 120.09985 * 299.72866 * 6 5 4 8 8 C 1.38220 * 119.99550 * 179.67299 * 7 6 5 9 9 C 1.38284 * 120.19369 * 0.62145 * 8 7 6 10 10 C 1.38233 * 120.19589 * 359.67943 * 9 8 7 11 11 C 1.38669 * 120.00697 * 359.97438 * 10 9 8 12 12 N 1.40152 * 120.09855 * 180.02562 * 11 10 9 13 13 C 1.34776 * 119.99867 * 325.35971 * 12 11 10 14 14 O 1.21301 * 119.99982 * 4.46476 * 13 12 11 15 15 C 1.50698 * 119.99889 * 184.45278 * 13 12 11 16 16 C 1.52998 * 109.46825 * 180.02562 * 15 13 12 17 17 C 1.50710 * 109.47047 * 180.02562 * 16 15 13 18 18 H 1.07998 * 119.99797 * 359.97438 * 17 16 15 19 19 C 1.37876 * 120.00032 * 179.97438 * 17 16 15 20 20 N 1.31513 * 119.99832 * 179.97438 * 19 17 16 21 21 Si 1.86802 * 120.00063 * 0.02562 * 19 17 16 22 22 H 1.48499 * 109.46958 * 89.99490 * 21 19 17 23 23 H 1.48492 * 109.47013 * 209.99381 * 21 19 17 24 24 H 1.48499 * 109.47124 * 329.99766 * 21 19 17 25 25 C 1.46955 * 110.88009 * 59.32246 * 5 4 3 26 26 C 1.46958 * 111.00410 * 123.79808 * 2 1 3 27 27 H 1.08995 * 109.46669 * 60.00148 * 1 2 3 28 28 H 1.08997 * 109.46761 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47081 * 299.99950 * 1 2 3 30 30 H 1.09004 * 109.48462 * 63.21719 * 3 2 1 31 31 H 1.08993 * 109.50339 * 303.16974 * 3 2 1 32 32 H 1.08999 * 109.48700 * 181.63354 * 4 3 2 33 33 H 1.08997 * 109.50565 * 61.57837 * 4 3 2 34 34 H 1.08004 * 120.00365 * 359.97438 * 7 6 5 35 35 H 1.08005 * 119.90469 * 180.29240 * 8 7 6 36 36 H 1.07994 * 119.90257 * 179.69477 * 9 8 7 37 37 H 1.08006 * 119.99885 * 180.02562 * 10 9 8 38 38 H 0.96999 * 120.00150 * 145.37038 * 12 11 10 39 39 H 1.08998 * 109.47450 * 300.00372 * 15 13 12 40 40 H 1.09004 * 109.46880 * 60.00693 * 15 13 12 41 41 H 1.09004 * 109.47368 * 300.00054 * 16 15 13 42 42 H 1.09004 * 109.47260 * 60.00393 * 16 15 13 43 43 H 0.97004 * 119.99685 * 180.02562 * 20 19 17 44 44 H 1.08996 * 109.48886 * 60.64511 * 25 5 4 45 45 H 1.09005 * 109.48882 * 180.71405 * 25 5 4 46 46 H 1.09002 * 109.48820 * 296.78514 * 26 2 1 47 47 H 1.09011 * 109.48727 * 56.83996 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9957 1.3720 0.0000 4 6 3.5235 1.3291 -0.0803 5 7 4.0501 0.5659 1.0598 6 6 5.4491 0.5658 1.0599 7 6 6.1448 0.0309 -0.0144 8 6 7.5269 0.0381 -0.0152 9 6 8.2203 0.5659 1.0586 10 6 7.5351 1.0955 2.1360 11 6 6.1484 1.0990 2.1423 12 7 5.4518 1.6359 3.2335 13 6 5.9500 1.5091 4.4793 14 8 7.0391 1.0024 4.6484 15 6 5.1541 1.9970 5.6623 16 6 5.9405 1.7364 6.9485 17 6 5.1443 2.2237 8.1317 18 1 4.1746 2.6746 7.9812 19 6 5.6539 2.0939 9.4062 20 7 4.9593 2.5197 10.4386 21 14 7.3315 1.3146 9.6665 22 1 8.3783 2.3670 9.6228 23 1 7.3637 0.6390 10.9885 24 1 7.5861 0.3184 8.5951 25 6 3.5235 -0.8061 1.0598 26 6 1.9957 -0.7632 1.1401 27 1 -0.3632 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.6938 1.8774 0.9174 31 1 1.6014 1.9132 -0.8600 32 1 3.9179 2.3448 -0.0512 33 1 3.8257 0.8482 -1.0106 34 1 5.6064 -0.3869 -0.8524 35 1 8.0671 -0.3746 -0.8545 36 1 9.3002 0.5646 1.0552 37 1 8.0798 1.5073 2.9728 38 1 4.6111 2.0986 3.0921 39 1 4.9696 3.0664 5.5600 40 1 4.2028 1.4665 5.7039 41 1 6.1254 0.6670 7.0511 42 1 6.8917 2.2671 6.9068 43 1 5.3180 2.4287 11.3353 44 1 3.8254 -1.3115 0.1425 45 1 3.9178 -1.3470 1.9201 46 1 1.6938 -0.2820 2.0704 47 1 1.6013 -1.7790 1.1111 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000812834748.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:19:58 Heat of formation + Delta-G solvation = 6.987204 kcal Electronic energy + Delta-G solvation = -26664.497563 eV Core-core repulsion = 23040.173582 eV Total energy + Delta-G solvation = -3624.323981 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.79359 -39.47357 -38.13754 -35.50114 -34.49840 -33.52493 -31.43092 -31.26366 -30.46546 -29.61708 -27.49809 -26.04245 -24.22527 -23.89783 -23.08931 -21.85013 -20.94105 -19.96611 -19.61295 -17.84437 -17.19066 -16.93197 -16.09456 -15.63441 -15.46498 -15.37116 -15.16255 -15.09745 -14.80222 -14.44490 -14.11981 -13.93057 -13.56090 -13.29639 -12.99087 -12.84576 -12.58521 -12.53094 -12.45086 -12.03218 -11.92337 -11.72199 -11.58736 -11.43118 -11.24860 -11.03709 -10.98550 -10.20294 -10.18368 -10.05576 -9.79578 -9.30355 -9.20142 -8.86998 -8.76822 -8.62322 -8.52134 -7.98975 -6.04131 -4.03093 1.19356 1.34277 2.99469 3.34037 3.37068 3.43861 3.50801 3.54375 3.60470 3.76781 4.49801 4.53244 4.69310 4.84015 4.86212 4.98988 5.00128 5.03555 5.08539 5.21099 5.21336 5.24761 5.31318 5.35689 5.45622 5.46805 5.52547 5.53698 5.59029 5.71952 5.75250 5.87457 6.02766 6.04887 6.22358 6.26864 6.48348 6.55239 6.60283 6.63173 6.65922 6.74879 6.86033 7.27846 7.34083 7.40586 7.69794 7.77202 8.46321 8.55485 8.98686 9.58716 11.08654 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.013009 B = 0.003364 C = 0.002800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2151.768679 B = 8320.193102 C = 9998.289812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.546 5.546 3 C 0.056 3.944 4 C 0.061 3.939 5 N -0.500 5.500 6 C 0.050 3.950 7 C -0.129 4.129 8 C -0.136 4.136 9 C -0.102 4.102 10 C -0.121 4.121 11 C 0.183 3.817 12 N -0.670 5.670 13 C 0.510 3.490 14 O -0.524 6.524 15 C -0.120 4.120 16 C 0.002 3.998 17 C -0.525 4.525 18 H 0.073 0.927 19 C 0.069 3.931 20 N -0.903 5.903 21 Si 0.877 3.123 22 H -0.277 1.277 23 H -0.288 1.288 24 H -0.261 1.261 25 C 0.065 3.935 26 C 0.055 3.945 27 H 0.068 0.932 28 H 0.068 0.932 29 H 0.028 0.972 30 H 0.046 0.954 31 H 0.080 0.920 32 H 0.081 0.919 33 H 0.047 0.953 34 H 0.119 0.881 35 H 0.119 0.881 36 H 0.124 0.876 37 H 0.144 0.856 38 H 0.414 0.586 39 H 0.088 0.912 40 H 0.089 0.911 41 H 0.024 0.976 42 H 0.020 0.980 43 H 0.263 0.737 44 H 0.046 0.954 45 H 0.082 0.918 46 H 0.047 0.953 47 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.528 -4.276 -26.756 27.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.271 5.271 3 C -0.073 4.073 4 C -0.066 4.066 5 N -0.221 5.221 6 C -0.046 4.046 7 C -0.150 4.150 8 C -0.155 4.155 9 C -0.121 4.121 10 C -0.142 4.142 11 C 0.086 3.914 12 N -0.315 5.315 13 C 0.300 3.700 14 O -0.399 6.399 15 C -0.159 4.159 16 C -0.036 4.036 17 C -0.563 4.563 18 H 0.091 0.909 19 C -0.132 4.132 20 N -0.542 5.542 21 Si 0.704 3.296 22 H -0.202 1.202 23 H -0.214 1.214 24 H -0.185 1.185 25 C -0.062 4.062 26 C -0.073 4.073 27 H 0.086 0.914 28 H 0.087 0.913 29 H 0.047 0.953 30 H 0.064 0.936 31 H 0.098 0.902 32 H 0.099 0.901 33 H 0.065 0.935 34 H 0.137 0.863 35 H 0.137 0.863 36 H 0.142 0.858 37 H 0.162 0.838 38 H 0.250 0.750 39 H 0.106 0.894 40 H 0.107 0.893 41 H 0.042 0.958 42 H 0.038 0.962 43 H 0.073 0.927 44 H 0.065 0.935 45 H 0.100 0.900 46 H 0.065 0.935 47 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -3.819 -4.613 -26.328 27.001 hybrid contribution 0.329 -0.190 0.158 0.411 sum -3.490 -4.803 -26.171 26.836 Atomic orbital electron populations 1.22345 0.87013 1.02165 1.00813 1.62180 1.07990 1.13953 1.43001 1.22192 0.94260 0.89437 1.01367 1.22240 0.94137 0.98554 0.91679 1.59650 1.04408 1.14764 1.43326 1.18461 0.88293 1.02366 0.95524 1.21352 0.94887 1.00482 0.98263 1.20942 0.93781 1.01877 0.98919 1.21095 0.99969 0.97867 0.93126 1.21379 0.92542 1.00996 0.99300 1.17703 0.90862 0.95546 0.87294 1.43738 1.26055 1.56694 1.05013 1.21784 0.86960 0.77448 0.83843 1.90645 1.21135 1.42756 1.85356 1.21680 0.99780 1.02028 0.92457 1.19379 0.95552 0.97691 0.90968 1.21095 1.05201 1.40308 0.89711 0.90914 1.24969 0.97426 0.94845 0.95973 1.69911 1.38208 1.47289 0.98773 0.86797 0.84717 0.80458 0.77596 1.20227 1.21438 1.18528 1.22193 0.94028 0.88309 1.01626 1.22205 0.94263 0.98659 0.92156 0.91367 0.91340 0.95331 0.93598 0.90163 0.90074 0.93502 0.86275 0.86293 0.85826 0.83796 0.74969 0.89359 0.89281 0.95777 0.96210 0.92701 0.93536 0.89963 0.93476 0.90077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.17 9.60 60.06 0.58 0.75 16 2 N -0.55 -4.68 4.97 -242.75 -1.21 -5.88 16 3 C 0.06 0.45 5.62 -3.76 -0.02 0.43 16 4 C 0.06 0.54 5.32 -3.77 -0.02 0.52 16 5 N -0.50 -5.24 4.17 -170.78 -0.71 -5.95 16 6 C 0.05 0.60 4.74 -83.55 -0.40 0.20 16 7 C -0.13 -1.39 8.64 -39.41 -0.34 -1.73 16 8 C -0.14 -1.42 10.04 -39.57 -0.40 -1.82 16 9 C -0.10 -1.21 10.04 -39.57 -0.40 -1.61 16 10 C -0.12 -1.76 8.70 -39.42 -0.34 -2.11 16 11 C 0.18 2.58 6.33 -83.44 -0.53 2.05 16 12 N -0.67 -9.67 5.17 -9.71 -0.05 -9.72 16 13 C 0.51 9.22 7.68 -10.99 -0.08 9.14 16 14 O -0.52 -11.21 13.40 5.54 0.07 -11.14 16 15 C -0.12 -2.29 5.64 -27.88 -0.16 -2.44 16 16 C 0.00 0.05 3.33 -27.88 -0.09 -0.04 16 17 C -0.53 -14.93 9.66 -34.44 -0.33 -15.27 16 18 H 0.07 2.16 7.99 -52.49 -0.42 1.74 16 19 C 0.07 2.04 5.47 -17.82 -0.10 1.95 16 20 N -0.90 -27.92 13.96 55.43 0.77 -27.15 16 21 Si 0.88 22.50 27.47 -169.99 -4.67 17.84 16 22 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 23 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 24 H -0.26 -6.66 6.54 56.52 0.37 -6.29 16 25 C 0.07 0.65 5.35 -3.77 -0.02 0.63 16 26 C 0.06 0.50 5.62 -3.77 -0.02 0.48 16 27 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.07 0.43 8.13 -51.93 -0.42 0.01 16 29 H 0.03 0.20 8.14 -51.93 -0.42 -0.22 16 30 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.08 0.69 8.13 -51.93 -0.42 0.27 16 33 H 0.05 0.42 7.26 -51.93 -0.38 0.04 16 34 H 0.12 1.10 7.06 -52.48 -0.37 0.73 16 35 H 0.12 0.96 8.06 -52.48 -0.42 0.54 16 36 H 0.12 1.22 8.06 -52.49 -0.42 0.79 16 37 H 0.14 2.37 6.20 -52.48 -0.33 2.04 16 38 H 0.41 5.06 8.51 -40.82 -0.35 4.71 16 39 H 0.09 1.55 8.14 -51.93 -0.42 1.12 16 40 H 0.09 1.60 8.14 -51.93 -0.42 1.17 16 41 H 0.02 0.62 7.16 -51.93 -0.37 0.25 16 42 H 0.02 0.50 7.53 -51.93 -0.39 0.11 16 43 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 44 H 0.05 0.46 7.43 -51.93 -0.39 0.08 16 45 H 0.08 0.91 8.13 -51.93 -0.42 0.49 16 46 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 47 H 0.08 0.64 8.13 -51.92 -0.42 0.22 16 LS Contribution 374.74 15.07 5.65 5.65 Total: -1.00 -32.96 374.74 -10.46 -43.42 By element: Atomic # 1 Polarization: 9.46 SS G_CDS: -7.65 Total: 1.81 kcal Atomic # 6 Polarization: -6.20 SS G_CDS: -2.67 Total: -8.87 kcal Atomic # 7 Polarization: -47.51 SS G_CDS: -1.19 Total: -48.71 kcal Atomic # 8 Polarization: -11.21 SS G_CDS: 0.07 Total: -11.14 kcal Atomic # 14 Polarization: 22.50 SS G_CDS: -4.67 Total: 17.84 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -32.96 -10.46 -43.42 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812834748.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.411 kcal (2) G-P(sol) polarization free energy of solvation -32.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.424 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds