Wall clock time and date at job start Tue Mar 31 2020 11:19:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46964 * 111.00380 * 2 1 4 4 C 1.53050 * 109.36694 * 183.18696 * 3 2 1 5 5 N 1.46958 * 109.36503 * 301.59859 * 4 3 2 6 6 C 1.39893 * 111.00018 * 183.18810 * 5 4 3 7 7 C 1.38715 * 120.09985 * 299.72866 * 6 5 4 8 8 C 1.38220 * 119.99550 * 179.67299 * 7 6 5 9 9 C 1.38284 * 120.19369 * 0.62145 * 8 7 6 10 10 C 1.38233 * 120.19589 * 359.67943 * 9 8 7 11 11 C 1.38669 * 120.00697 * 359.97438 * 10 9 8 12 12 N 1.40152 * 120.09855 * 180.02562 * 11 10 9 13 13 C 1.34776 * 119.99867 * 325.35971 * 12 11 10 14 14 O 1.21301 * 119.99982 * 4.46476 * 13 12 11 15 15 C 1.50698 * 119.99889 * 184.45278 * 13 12 11 16 16 C 1.52998 * 109.46825 * 180.02562 * 15 13 12 17 17 C 1.50710 * 109.47047 * 180.02562 * 16 15 13 18 18 H 1.07998 * 119.99797 * 359.97438 * 17 16 15 19 19 C 1.37876 * 120.00032 * 179.97438 * 17 16 15 20 20 N 1.31513 * 119.99832 * 179.97438 * 19 17 16 21 21 Si 1.86802 * 120.00063 * 0.02562 * 19 17 16 22 22 H 1.48499 * 109.46958 * 89.99490 * 21 19 17 23 23 H 1.48492 * 109.47013 * 209.99381 * 21 19 17 24 24 H 1.48499 * 109.47124 * 329.99766 * 21 19 17 25 25 C 1.46955 * 110.88009 * 59.32246 * 5 4 3 26 26 C 1.46958 * 111.00410 * 123.79808 * 2 1 3 27 27 H 1.08995 * 109.46669 * 60.00148 * 1 2 3 28 28 H 1.08997 * 109.46761 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47081 * 299.99950 * 1 2 3 30 30 H 1.09004 * 109.48462 * 63.21719 * 3 2 1 31 31 H 1.08993 * 109.50339 * 303.16974 * 3 2 1 32 32 H 1.08999 * 109.48700 * 181.63354 * 4 3 2 33 33 H 1.08997 * 109.50565 * 61.57837 * 4 3 2 34 34 H 1.08004 * 120.00365 * 359.97438 * 7 6 5 35 35 H 1.08005 * 119.90469 * 180.29240 * 8 7 6 36 36 H 1.07994 * 119.90257 * 179.69477 * 9 8 7 37 37 H 1.08006 * 119.99885 * 180.02562 * 10 9 8 38 38 H 0.96999 * 120.00150 * 145.37038 * 12 11 10 39 39 H 1.08998 * 109.47450 * 300.00372 * 15 13 12 40 40 H 1.09004 * 109.46880 * 60.00693 * 15 13 12 41 41 H 1.09004 * 109.47368 * 300.00054 * 16 15 13 42 42 H 1.09004 * 109.47260 * 60.00393 * 16 15 13 43 43 H 0.97004 * 119.99685 * 180.02562 * 20 19 17 44 44 H 1.08996 * 109.48886 * 60.64511 * 25 5 4 45 45 H 1.09005 * 109.48882 * 180.71405 * 25 5 4 46 46 H 1.09002 * 109.48820 * 296.78514 * 26 2 1 47 47 H 1.09011 * 109.48727 * 56.83996 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9957 1.3720 0.0000 4 6 3.5235 1.3291 -0.0803 5 7 4.0501 0.5659 1.0598 6 6 5.4491 0.5658 1.0599 7 6 6.1448 0.0309 -0.0144 8 6 7.5269 0.0381 -0.0152 9 6 8.2203 0.5659 1.0586 10 6 7.5351 1.0955 2.1360 11 6 6.1484 1.0990 2.1423 12 7 5.4518 1.6359 3.2335 13 6 5.9500 1.5091 4.4793 14 8 7.0391 1.0024 4.6484 15 6 5.1541 1.9970 5.6623 16 6 5.9405 1.7364 6.9485 17 6 5.1443 2.2237 8.1317 18 1 4.1746 2.6746 7.9812 19 6 5.6539 2.0939 9.4062 20 7 4.9593 2.5197 10.4386 21 14 7.3315 1.3146 9.6665 22 1 8.3783 2.3670 9.6228 23 1 7.3637 0.6390 10.9885 24 1 7.5861 0.3184 8.5951 25 6 3.5235 -0.8061 1.0598 26 6 1.9957 -0.7632 1.1401 27 1 -0.3632 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.6938 1.8774 0.9174 31 1 1.6014 1.9132 -0.8600 32 1 3.9179 2.3448 -0.0512 33 1 3.8257 0.8482 -1.0106 34 1 5.6064 -0.3869 -0.8524 35 1 8.0671 -0.3746 -0.8545 36 1 9.3002 0.5646 1.0552 37 1 8.0798 1.5073 2.9728 38 1 4.6111 2.0986 3.0921 39 1 4.9696 3.0664 5.5600 40 1 4.2028 1.4665 5.7039 41 1 6.1254 0.6670 7.0511 42 1 6.8917 2.2671 6.9068 43 1 5.3180 2.4287 11.3353 44 1 3.8254 -1.3115 0.1425 45 1 3.9178 -1.3470 1.9201 46 1 1.6938 -0.2820 2.0704 47 1 1.6013 -1.7790 1.1111 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000812834748.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:19:57 Heat of formation + Delta-G solvation = -15.435960 kcal Electronic energy + Delta-G solvation = -26665.469905 eV Core-core repulsion = 23040.173582 eV Total energy + Delta-G solvation = -3625.296322 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.82173 -40.56579 -39.08922 -36.27106 -35.79839 -35.50367 -33.39463 -31.96565 -31.30771 -30.75443 -28.42732 -27.70941 -24.94541 -24.60204 -24.33871 -23.05310 -22.28047 -21.16630 -20.63333 -19.26182 -18.74067 -17.85874 -17.67299 -16.78627 -16.29236 -16.22595 -16.17610 -15.99096 -15.90526 -15.75053 -15.40458 -15.03497 -14.78686 -14.61116 -14.44518 -14.25915 -13.63363 -13.49194 -13.43460 -13.18193 -12.92923 -12.75850 -12.71968 -12.57223 -12.29361 -12.13552 -11.98043 -11.92843 -11.80857 -11.78464 -11.42003 -11.31270 -10.78705 -10.75040 -9.75521 -9.59243 -9.32062 -9.04724 -8.32201 -6.35262 0.24758 0.36755 1.32806 1.34828 1.49692 1.62588 2.13280 2.34308 2.68173 2.81621 2.96292 3.03537 3.80944 3.86670 3.99922 4.04564 4.17790 4.18120 4.27741 4.29970 4.31589 4.38925 4.44185 4.50796 4.56554 4.60450 4.64384 4.67298 4.80071 4.81374 4.88008 4.95786 4.97639 5.02969 5.05211 5.27742 5.32370 5.37555 5.42080 5.53950 5.58097 5.61660 5.82345 5.85312 6.04396 6.06852 6.22203 6.37205 6.50374 6.71019 7.19213 7.30057 8.83481 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.013009 B = 0.003364 C = 0.002800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2151.768679 B = 8320.193102 C = 9998.289812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.552 5.552 3 C 0.058 3.942 4 C 0.064 3.936 5 N -0.508 5.508 6 C 0.056 3.944 7 C -0.127 4.127 8 C -0.124 4.124 9 C -0.107 4.107 10 C -0.143 4.143 11 C 0.153 3.847 12 N -0.652 5.652 13 C 0.515 3.485 14 O -0.562 6.562 15 C -0.112 4.112 16 C 0.007 3.993 17 C -0.529 4.529 18 H 0.050 0.950 19 C 0.014 3.986 20 N -0.943 5.943 21 Si 0.939 3.061 22 H -0.268 1.268 23 H -0.278 1.278 24 H -0.262 1.262 25 C 0.068 3.932 26 C 0.059 3.941 27 H 0.079 0.921 28 H 0.074 0.926 29 H 0.024 0.976 30 H 0.037 0.963 31 H 0.097 0.903 32 H 0.084 0.916 33 H 0.051 0.949 34 H 0.140 0.860 35 H 0.151 0.849 36 H 0.141 0.859 37 H 0.117 0.883 38 H 0.424 0.576 39 H 0.105 0.895 40 H 0.102 0.898 41 H 0.010 0.990 42 H 0.011 0.989 43 H 0.267 0.733 44 H 0.052 0.948 45 H 0.067 0.933 46 H 0.033 0.967 47 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.432 -5.089 -29.655 30.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.277 5.277 3 C -0.070 4.070 4 C -0.063 4.063 5 N -0.230 5.230 6 C -0.040 4.040 7 C -0.148 4.148 8 C -0.143 4.143 9 C -0.125 4.125 10 C -0.163 4.163 11 C 0.058 3.942 12 N -0.297 5.297 13 C 0.305 3.695 14 O -0.441 6.441 15 C -0.152 4.152 16 C -0.031 4.031 17 C -0.567 4.567 18 H 0.068 0.932 19 C -0.184 4.184 20 N -0.584 5.584 21 Si 0.763 3.237 22 H -0.193 1.193 23 H -0.204 1.204 24 H -0.186 1.186 25 C -0.058 4.058 26 C -0.069 4.069 27 H 0.098 0.902 28 H 0.093 0.907 29 H 0.042 0.958 30 H 0.055 0.945 31 H 0.115 0.885 32 H 0.102 0.898 33 H 0.069 0.931 34 H 0.158 0.842 35 H 0.169 0.831 36 H 0.159 0.841 37 H 0.135 0.865 38 H 0.262 0.738 39 H 0.123 0.877 40 H 0.120 0.880 41 H 0.028 0.972 42 H 0.030 0.970 43 H 0.076 0.924 44 H 0.070 0.930 45 H 0.085 0.915 46 H 0.052 0.948 47 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -3.755 -5.413 -29.276 30.008 hybrid contribution 0.221 0.071 0.938 0.967 sum -3.534 -5.342 -28.338 29.053 Atomic orbital electron populations 1.22389 0.86007 1.02742 1.01149 1.62221 1.08938 1.14057 1.42437 1.22209 0.93779 0.89380 1.01677 1.22266 0.94543 0.98416 0.91046 1.59629 1.03685 1.15233 1.44493 1.18518 0.89053 1.01461 0.94935 1.21624 0.95219 0.99671 0.98240 1.21307 0.93850 1.00142 0.98989 1.21322 1.01009 0.97456 0.92726 1.21314 0.92937 1.02421 0.99677 1.17877 0.91010 0.97499 0.87845 1.43380 1.26126 1.56046 1.04130 1.21400 0.86247 0.77186 0.84675 1.90636 1.22594 1.44807 1.86015 1.21481 0.99508 1.03460 0.90753 1.19214 0.95329 0.96291 0.92263 1.21408 1.04650 1.39493 0.91162 0.93190 1.25797 1.01105 0.95562 0.95910 1.70024 1.40094 1.48878 0.99378 0.85825 0.80443 0.79731 0.77698 1.19285 1.20392 1.18582 1.22144 0.94634 0.87909 1.01131 1.22153 0.93592 0.99278 0.91861 0.90208 0.90711 0.95781 0.94505 0.88488 0.89774 0.93060 0.84181 0.83111 0.84088 0.86499 0.73755 0.87667 0.88014 0.97159 0.97023 0.92362 0.93011 0.91497 0.94824 0.89035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.30 9.60 127.69 1.23 1.52 16 2 N -0.55 -8.28 4.97 -921.92 -4.58 -12.85 16 3 C 0.06 0.81 5.62 86.31 0.49 1.30 16 4 C 0.06 0.98 5.32 86.31 0.46 1.44 16 5 N -0.51 -9.85 4.17 -694.21 -2.89 -12.74 16 6 C 0.06 1.26 4.74 38.26 0.18 1.44 16 7 C -0.13 -2.36 8.64 22.38 0.19 -2.17 16 8 C -0.12 -2.21 10.04 22.28 0.22 -1.99 16 9 C -0.11 -2.37 10.04 22.28 0.22 -2.14 16 10 C -0.14 -4.15 8.70 22.37 0.19 -3.95 16 11 C 0.15 4.26 6.33 38.21 0.24 4.50 16 12 N -0.65 -18.69 5.17 -303.02 -1.57 -20.25 16 13 C 0.52 18.80 7.68 87.66 0.67 19.47 16 14 O -0.56 -24.62 13.40 -3.10 -0.04 -24.66 16 15 C -0.11 -4.30 5.64 29.85 0.17 -4.13 16 16 C 0.01 0.35 3.33 29.85 0.10 0.45 16 17 C -0.53 -30.63 9.66 25.60 0.25 -30.38 16 18 H 0.05 3.04 7.99 -2.91 -0.02 3.02 16 19 C 0.01 0.83 5.47 84.65 0.46 1.30 16 20 N -0.94 -59.23 13.96 21.45 0.30 -58.93 16 21 Si 0.94 46.90 27.47 68.60 1.88 48.79 16 22 H -0.27 -12.92 7.11 99.48 0.71 -12.21 16 23 H -0.28 -13.37 7.11 99.48 0.71 -12.66 16 24 H -0.26 -13.00 6.54 99.48 0.65 -12.35 16 25 C 0.07 1.27 5.35 86.31 0.46 1.73 16 26 C 0.06 0.98 5.62 86.31 0.49 1.47 16 27 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 28 H 0.07 0.79 8.13 -2.39 -0.02 0.77 16 29 H 0.02 0.31 8.14 -2.39 -0.02 0.29 16 30 H 0.04 0.59 8.14 -2.38 -0.02 0.57 16 31 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 32 H 0.08 1.25 8.13 -2.39 -0.02 1.23 16 33 H 0.05 0.76 7.26 -2.39 -0.02 0.74 16 34 H 0.14 2.04 7.06 -2.91 -0.02 2.02 16 35 H 0.15 1.76 8.06 -2.91 -0.02 1.74 16 36 H 0.14 2.53 8.06 -2.91 -0.02 2.51 16 37 H 0.12 4.02 6.20 -2.91 -0.02 4.00 16 38 H 0.42 10.09 8.51 -92.71 -0.79 9.30 16 39 H 0.11 3.64 8.14 -2.39 -0.02 3.62 16 40 H 0.10 3.61 8.14 -2.39 -0.02 3.60 16 41 H 0.01 0.53 7.16 -2.38 -0.02 0.51 16 42 H 0.01 0.59 7.53 -2.39 -0.02 0.57 16 43 H 0.27 15.69 8.31 -92.71 -0.77 14.92 16 44 H 0.05 0.90 7.43 -2.39 -0.02 0.89 16 45 H 0.07 1.44 8.13 -2.38 -0.02 1.42 16 46 H 0.03 0.65 8.14 -2.39 -0.02 0.63 16 47 H 0.09 1.31 8.13 -2.38 -0.02 1.29 16 Total: -1.00 -71.87 374.74 -0.76 -72.62 By element: Atomic # 1 Polarization: 18.06 SS G_CDS: 0.11 Total: 18.17 kcal Atomic # 6 Polarization: -16.16 SS G_CDS: 6.03 Total: -10.14 kcal Atomic # 7 Polarization: -96.04 SS G_CDS: -8.74 Total: -104.78 kcal Atomic # 8 Polarization: -24.62 SS G_CDS: -0.04 Total: -24.66 kcal Atomic # 14 Polarization: 46.90 SS G_CDS: 1.88 Total: 48.79 kcal Total: -71.87 -0.76 -72.62 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812834748.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.188 kcal (2) G-P(sol) polarization free energy of solvation -71.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.624 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds