Wall clock time and date at job start Tue Mar 31 2020 11:41:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46903 * 110.99825 * 2 1 4 4 C 1.46896 * 111.00160 * 123.95765 * 2 1 3 5 5 C 1.53001 * 109.47396 * 66.04696 * 4 2 1 6 6 O 1.42898 * 109.47278 * 65.00174 * 5 4 2 7 7 C 1.35996 * 117.00279 * 180.02562 * 6 5 4 8 8 C 1.38694 * 119.98625 * 179.97438 * 7 6 5 9 9 C 1.38111 * 120.02446 * 180.02562 * 8 7 6 10 10 C 1.38857 * 119.97707 * 0.25986 * 9 8 7 11 11 N 1.39944 * 120.01819 * 179.69711 * 10 9 8 12 12 C 1.46493 * 119.99974 * 180.02562 * 11 10 9 13 13 C 1.53002 * 109.47402 * 180.02562 * 12 11 10 14 14 H 1.09003 * 109.47273 * 54.99462 * 13 12 11 15 15 C 1.47204 * 109.46784 * 294.99946 * 13 12 11 16 16 N 9.45876 * 111.01837 * 234.99256 * 5 1 2 17 17 C 1.52999 * 109.47590 * 175.00053 * 13 12 11 18 18 C 1.50699 * 109.47166 * 184.99804 * 17 13 12 19 19 H 1.07996 * 119.99740 * 0.02562 * 18 17 13 20 20 C 1.37879 * 119.99911 * 179.97438 * 18 17 13 21 21 N 1.31510 * 119.99819 * 179.97438 * 20 18 17 22 22 Si 1.86803 * 119.99968 * 0.02562 * 20 18 17 23 23 H 1.48490 * 109.47179 * 89.99483 * 22 20 18 24 24 H 1.48494 * 109.46687 * 209.99586 * 22 20 18 25 25 H 1.48497 * 109.46768 * 329.99013 * 22 20 18 26 26 C 1.38867 * 119.96484 * 359.48327 * 10 9 8 27 27 C 1.38109 * 119.97425 * 0.51585 * 26 10 9 28 28 H 1.08998 * 109.46836 * 296.04341 * 1 2 3 29 29 H 1.09000 * 109.47314 * 56.04941 * 1 2 3 30 30 H 1.08998 * 109.47136 * 176.04367 * 1 2 3 31 31 H 1.09004 * 109.46817 * 183.95108 * 3 2 1 32 32 H 1.09000 * 109.47099 * 303.95231 * 3 2 1 33 33 H 1.08996 * 109.46906 * 63.95801 * 3 2 1 34 34 H 1.09000 * 109.47140 * 306.04180 * 4 2 1 35 35 H 1.09008 * 109.47313 * 186.04659 * 4 2 1 36 36 H 1.08997 * 109.46656 * 304.99819 * 5 4 2 37 37 H 1.09001 * 109.47136 * 185.00586 * 5 4 2 38 38 H 1.07999 * 119.98667 * 359.97438 * 8 7 6 39 39 H 1.08002 * 120.00866 * 179.97438 * 9 8 7 40 40 H 0.97000 * 119.99776 * 359.97438 * 11 10 9 41 41 H 1.09003 * 109.47091 * 299.99884 * 12 11 10 42 42 H 1.09004 * 109.47739 * 59.99503 * 12 11 10 43 43 H 1.09004 * 109.46808 * 304.99664 * 17 13 12 44 44 H 1.08996 * 109.47312 * 64.99537 * 17 13 12 45 45 H 0.96998 * 119.99768 * 180.02562 * 21 20 18 46 46 H 1.07990 * 120.01167 * 180.23185 * 26 10 9 47 47 H 1.08000 * 119.98554 * 179.72455 * 27 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9954 -0.7660 1.1375 5 6 1.6315 -2.2427 0.9702 6 8 2.2956 -2.7696 -0.1801 7 6 2.0774 -4.0796 -0.4731 8 6 2.6906 -4.6547 -1.5762 9 6 2.4691 -5.9848 -1.8748 10 6 1.6278 -6.7450 -1.0733 11 7 1.3978 -8.0912 -1.3787 12 6 0.5097 -8.8927 -0.5331 13 6 0.4321 -10.3185 -1.0825 14 1 1.4378 -10.7299 -1.1692 15 6 -0.2061 -10.2991 -2.4089 16 7 -0.6972 -10.2851 -3.4303 17 6 -0.3941 -11.1872 -0.1319 18 6 -0.3684 -12.6170 -0.6076 19 1 0.1823 -12.8797 -1.4986 20 6 -1.0473 -13.5896 0.0953 21 7 -1.0254 -14.8372 -0.3201 22 14 -1.9994 -13.1351 1.6369 23 1 -3.3933 -12.7777 1.2705 24 1 -2.0134 -14.2911 2.5688 25 1 -1.3480 -11.9752 2.2969 26 6 1.0184 -6.1699 0.0341 27 6 1.2411 -4.8397 0.3311 28 1 -0.3633 0.4512 0.9233 29 1 -0.3634 0.5739 -0.8525 30 1 -0.3633 -1.0252 -0.0709 31 1 3.0828 1.3432 -0.0708 32 1 1.5897 1.9163 -0.8525 33 1 1.7044 1.8723 0.9233 34 1 1.5612 -0.3873 2.0627 35 1 3.0798 -0.6611 1.1755 36 1 0.5533 -2.3389 0.8432 37 1 1.9439 -2.7964 1.8556 38 1 3.3409 -4.0619 -2.2024 39 1 2.9464 -6.4322 -2.7341 40 1 1.8257 -8.4933 -2.1507 41 1 0.9005 -8.9165 0.4842 42 1 -0.4862 -8.4496 -0.5293 43 1 0.0281 -11.1306 0.8715 44 1 -1.4232 -10.8287 -0.1138 45 1 -1.5033 -15.5214 0.1742 46 1 0.3670 -6.7615 0.6602 47 1 0.7638 -4.3911 1.1898 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000819453644.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:41:33 Heat of formation + Delta-G solvation = 19.208695 kcal Electronic energy + Delta-G solvation = -24950.546680 eV Core-core repulsion = 21326.752663 eV Total energy + Delta-G solvation = -3623.794017 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.15430 -38.61828 -37.57527 -36.75449 -34.80963 -33.51759 -31.88111 -31.11972 -30.46833 -28.52182 -28.00346 -26.51380 -24.92596 -23.94747 -22.52365 -21.69012 -21.28812 -20.94065 -18.28342 -17.43034 -16.98857 -16.68970 -16.66186 -16.02729 -15.56079 -15.25664 -14.90009 -14.79067 -14.45973 -14.15624 -13.90231 -13.53549 -13.42043 -13.12195 -13.05415 -12.86588 -12.74855 -12.56510 -12.54515 -12.32656 -12.18357 -12.13711 -11.92670 -11.57421 -11.52404 -11.42425 -11.05379 -10.94423 -10.66645 -10.42508 -10.11659 -9.90514 -9.45010 -9.41254 -8.96097 -8.75632 -8.67902 -7.03010 -6.16857 -4.18561 1.37662 1.71137 3.16813 3.22686 3.29729 3.30881 3.42659 3.47773 3.51029 3.62685 3.90585 4.32557 4.49760 4.56559 4.62460 4.75757 4.87004 4.89104 4.93811 4.98206 5.04245 5.13380 5.14522 5.17633 5.21318 5.33727 5.38140 5.46849 5.48611 5.50497 5.56959 5.59456 5.83508 5.95092 6.04671 6.15020 6.16942 6.35335 6.44276 6.55800 6.57864 6.69774 6.83834 6.99661 7.32979 7.53602 7.57152 7.82882 8.25382 8.34530 8.85446 9.42258 10.96027 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.022473 B = 0.002044 C = 0.001951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1245.639653 B =13694.745561 C =14349.358938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.540 5.540 3 C 0.025 3.975 4 C 0.055 3.945 5 C 0.065 3.935 6 O -0.304 6.304 7 C 0.065 3.935 8 C -0.101 4.101 9 C -0.159 4.159 10 C 0.190 3.810 11 N -0.749 5.749 12 C 0.131 3.869 13 C 0.007 3.993 14 H 0.113 0.887 15 C 0.235 3.765 16 N -0.458 5.458 17 C -0.002 4.002 18 C -0.531 4.531 19 H 0.074 0.926 20 C 0.072 3.928 21 N -0.895 5.895 22 Si 0.878 3.122 23 H -0.276 1.276 24 H -0.286 1.286 25 H -0.262 1.262 26 C -0.160 4.160 27 C -0.160 4.160 28 H 0.024 0.976 29 H 0.069 0.931 30 H 0.071 0.929 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.023 0.977 34 H 0.053 0.947 35 H 0.086 0.914 36 H 0.060 0.940 37 H 0.063 0.937 38 H 0.126 0.874 39 H 0.125 0.875 40 H 0.399 0.601 41 H 0.078 0.922 42 H 0.063 0.937 43 H 0.041 0.959 44 H 0.023 0.977 45 H 0.265 0.735 46 H 0.125 0.875 47 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.269 29.701 5.796 31.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.264 5.264 3 C -0.123 4.123 4 C -0.073 4.073 5 C -0.011 4.011 6 O -0.218 6.218 7 C 0.019 3.981 8 C -0.121 4.121 9 C -0.182 4.182 10 C 0.087 3.913 11 N -0.380 5.380 12 C 0.005 3.995 13 C -0.015 4.015 14 H 0.131 0.869 15 C -0.082 4.082 16 N -0.135 5.135 17 C -0.041 4.041 18 C -0.569 4.569 19 H 0.092 0.908 20 C -0.131 4.131 21 N -0.532 5.532 22 Si 0.705 3.295 23 H -0.202 1.202 24 H -0.212 1.212 25 H -0.186 1.186 26 C -0.183 4.183 27 C -0.180 4.180 28 H 0.043 0.957 29 H 0.088 0.912 30 H 0.089 0.911 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.042 0.958 34 H 0.071 0.929 35 H 0.105 0.895 36 H 0.078 0.922 37 H 0.081 0.919 38 H 0.144 0.856 39 H 0.143 0.857 40 H 0.234 0.766 41 H 0.096 0.904 42 H 0.081 0.919 43 H 0.059 0.941 44 H 0.041 0.959 45 H 0.075 0.925 46 H 0.143 0.857 47 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 6.605 29.354 3.901 30.340 hybrid contribution -0.767 0.051 1.830 1.985 sum 5.837 29.405 5.731 30.522 Atomic orbital electron populations 1.22475 0.87326 1.02599 1.00486 1.61920 1.07955 1.13730 1.42785 1.22388 1.00967 0.88542 1.00420 1.22192 1.01596 0.91711 0.91784 1.22733 0.97010 0.93514 0.87860 1.86128 1.67630 1.22331 1.45698 1.18728 0.99141 0.83567 0.96644 1.20089 1.01333 0.94264 0.96373 1.20411 1.02582 0.93617 1.01558 1.17757 0.94809 0.84692 0.94012 1.44788 1.52983 1.07631 1.32629 1.21496 0.94098 0.89271 0.94611 1.19213 1.01074 0.95269 0.85894 0.86879 1.28845 0.93258 0.91869 0.94229 1.80950 1.09700 1.09735 1.13076 1.19617 0.94851 0.95325 0.94346 1.20986 1.33322 0.89876 1.12730 0.90773 1.24989 0.95795 0.94812 0.97469 1.69898 1.42525 1.00939 1.39882 0.86811 0.80819 0.78504 0.83393 1.20217 1.21184 1.18645 1.20469 1.04160 0.95069 0.98611 1.20947 1.01404 0.94769 1.00848 0.95698 0.91177 0.91063 0.91191 0.91240 0.95806 0.92861 0.89542 0.92234 0.91933 0.85578 0.85707 0.76626 0.90397 0.91854 0.94083 0.95888 0.92471 0.85714 0.86101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.13 9.33 60.06 0.56 0.69 16 2 N -0.54 -4.28 4.97 -251.26 -1.25 -5.52 16 3 C 0.02 0.15 9.57 60.07 0.57 0.72 16 4 C 0.06 0.38 5.34 -3.83 -0.02 0.36 16 5 C 0.06 0.53 4.80 37.16 0.18 0.70 16 6 O -0.30 -3.45 10.09 -19.73 -0.20 -3.65 16 7 C 0.07 0.78 6.69 -39.24 -0.26 0.51 16 8 C -0.10 -1.19 9.98 -39.46 -0.39 -1.58 16 9 C -0.16 -1.86 9.89 -39.40 -0.39 -2.25 16 10 C 0.19 2.38 6.66 -83.69 -0.56 1.82 16 11 N -0.75 -9.34 5.53 -58.59 -0.32 -9.67 16 12 C 0.13 1.71 4.28 -4.04 -0.02 1.70 16 13 C 0.01 0.12 2.26 -93.40 -0.21 -0.09 16 14 H 0.11 1.73 8.14 -51.93 -0.42 1.31 16 15 C 0.24 4.54 13.44 -20.84 -0.28 4.26 16 16 N -0.46 -9.83 18.52 42.05 0.78 -9.06 16 17 C 0.00 -0.05 3.49 -27.88 -0.10 -0.15 16 18 C -0.53 -13.88 9.15 -34.44 -0.32 -14.20 16 19 H 0.07 2.13 7.84 -52.49 -0.41 1.72 16 20 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 21 N -0.89 -26.53 13.96 55.43 0.77 -25.76 16 22 Si 0.88 20.14 27.47 -169.99 -4.67 15.47 16 23 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 24 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 25 H -0.26 -5.50 6.54 56.52 0.37 -5.13 16 26 C -0.16 -1.92 9.31 -39.40 -0.37 -2.29 16 27 C -0.16 -1.80 9.03 -39.46 -0.36 -2.15 16 28 H 0.02 0.14 8.14 -51.93 -0.42 -0.28 16 29 H 0.07 0.44 8.12 -51.93 -0.42 0.02 16 30 H 0.07 0.52 6.37 -51.93 -0.33 0.19 16 31 H 0.07 0.40 8.12 -51.93 -0.42 -0.03 16 32 H 0.07 0.38 8.12 -51.93 -0.42 -0.04 16 33 H 0.02 0.12 8.14 -51.93 -0.42 -0.30 16 34 H 0.05 0.28 8.12 -51.93 -0.42 -0.14 16 35 H 0.09 0.59 8.06 -51.92 -0.42 0.17 16 36 H 0.06 0.46 5.85 -51.93 -0.30 0.16 16 37 H 0.06 0.43 7.66 -51.93 -0.40 0.04 16 38 H 0.13 1.31 8.06 -52.49 -0.42 0.89 16 39 H 0.13 1.26 8.06 -52.49 -0.42 0.84 16 40 H 0.40 4.75 8.23 -40.82 -0.34 4.42 16 41 H 0.08 0.92 7.94 -51.93 -0.41 0.50 16 42 H 0.06 0.84 7.96 -51.93 -0.41 0.43 16 43 H 0.04 0.78 7.20 -51.93 -0.37 0.41 16 44 H 0.02 0.47 7.57 -51.93 -0.39 0.08 16 45 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 46 H 0.12 1.38 6.73 -52.49 -0.35 1.02 16 47 H 0.12 1.10 6.29 -52.49 -0.33 0.77 16 LS Contribution 388.99 15.07 5.86 5.86 Total: -1.00 -31.93 388.99 -8.52 -40.45 By element: Atomic # 1 Polarization: 9.37 SS G_CDS: -7.44 Total: 1.93 kcal Atomic # 6 Polarization: -8.01 SS G_CDS: -2.05 Total: -10.06 kcal Atomic # 7 Polarization: -49.98 SS G_CDS: -0.02 Total: -50.00 kcal Atomic # 8 Polarization: -3.45 SS G_CDS: -0.20 Total: -3.65 kcal Atomic # 14 Polarization: 20.14 SS G_CDS: -4.67 Total: 15.47 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -31.93 -8.52 -40.45 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000819453644.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.660 kcal (2) G-P(sol) polarization free energy of solvation -31.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.452 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds