Wall clock time and date at job start Tue Mar 31 2020 11:41:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46903 * 110.99825 * 2 1 4 4 C 1.46896 * 111.00160 * 123.95765 * 2 1 3 5 5 C 1.53001 * 109.47396 * 66.04696 * 4 2 1 6 6 O 1.42898 * 109.47278 * 65.00174 * 5 4 2 7 7 C 1.35996 * 117.00279 * 180.02562 * 6 5 4 8 8 C 1.38694 * 119.98625 * 179.97438 * 7 6 5 9 9 C 1.38111 * 120.02446 * 180.02562 * 8 7 6 10 10 C 1.38857 * 119.97707 * 0.25986 * 9 8 7 11 11 N 1.39944 * 120.01819 * 179.69711 * 10 9 8 12 12 C 1.46493 * 119.99974 * 180.02562 * 11 10 9 13 13 C 1.53002 * 109.47402 * 180.02562 * 12 11 10 14 14 H 1.09003 * 109.47273 * 54.99462 * 13 12 11 15 15 C 1.47204 * 109.46784 * 294.99946 * 13 12 11 16 16 N 9.45876 * 111.01837 * 234.99256 * 5 1 2 17 17 C 1.52999 * 109.47590 * 175.00053 * 13 12 11 18 18 C 1.50699 * 109.47166 * 184.99804 * 17 13 12 19 19 H 1.07996 * 119.99740 * 0.02562 * 18 17 13 20 20 C 1.37879 * 119.99911 * 179.97438 * 18 17 13 21 21 N 1.31510 * 119.99819 * 179.97438 * 20 18 17 22 22 Si 1.86803 * 119.99968 * 0.02562 * 20 18 17 23 23 H 1.48490 * 109.47179 * 89.99483 * 22 20 18 24 24 H 1.48494 * 109.46687 * 209.99586 * 22 20 18 25 25 H 1.48497 * 109.46768 * 329.99013 * 22 20 18 26 26 C 1.38867 * 119.96484 * 359.48327 * 10 9 8 27 27 C 1.38109 * 119.97425 * 0.51585 * 26 10 9 28 28 H 1.08998 * 109.46836 * 296.04341 * 1 2 3 29 29 H 1.09000 * 109.47314 * 56.04941 * 1 2 3 30 30 H 1.08998 * 109.47136 * 176.04367 * 1 2 3 31 31 H 1.09004 * 109.46817 * 183.95108 * 3 2 1 32 32 H 1.09000 * 109.47099 * 303.95231 * 3 2 1 33 33 H 1.08996 * 109.46906 * 63.95801 * 3 2 1 34 34 H 1.09000 * 109.47140 * 306.04180 * 4 2 1 35 35 H 1.09008 * 109.47313 * 186.04659 * 4 2 1 36 36 H 1.08997 * 109.46656 * 304.99819 * 5 4 2 37 37 H 1.09001 * 109.47136 * 185.00586 * 5 4 2 38 38 H 1.07999 * 119.98667 * 359.97438 * 8 7 6 39 39 H 1.08002 * 120.00866 * 179.97438 * 9 8 7 40 40 H 0.97000 * 119.99776 * 359.97438 * 11 10 9 41 41 H 1.09003 * 109.47091 * 299.99884 * 12 11 10 42 42 H 1.09004 * 109.47739 * 59.99503 * 12 11 10 43 43 H 1.09004 * 109.46808 * 304.99664 * 17 13 12 44 44 H 1.08996 * 109.47312 * 64.99537 * 17 13 12 45 45 H 0.96998 * 119.99768 * 180.02562 * 21 20 18 46 46 H 1.07990 * 120.01167 * 180.23185 * 26 10 9 47 47 H 1.08000 * 119.98554 * 179.72455 * 27 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9954 -0.7660 1.1375 5 6 1.6315 -2.2427 0.9702 6 8 2.2956 -2.7696 -0.1801 7 6 2.0774 -4.0796 -0.4731 8 6 2.6906 -4.6547 -1.5762 9 6 2.4691 -5.9848 -1.8748 10 6 1.6278 -6.7450 -1.0733 11 7 1.3978 -8.0912 -1.3787 12 6 0.5097 -8.8927 -0.5331 13 6 0.4321 -10.3185 -1.0825 14 1 1.4378 -10.7299 -1.1692 15 6 -0.2061 -10.2991 -2.4089 16 7 -0.6972 -10.2851 -3.4303 17 6 -0.3941 -11.1872 -0.1319 18 6 -0.3684 -12.6170 -0.6076 19 1 0.1823 -12.8797 -1.4986 20 6 -1.0473 -13.5896 0.0953 21 7 -1.0254 -14.8372 -0.3201 22 14 -1.9994 -13.1351 1.6369 23 1 -3.3933 -12.7777 1.2705 24 1 -2.0134 -14.2911 2.5688 25 1 -1.3480 -11.9752 2.2969 26 6 1.0184 -6.1699 0.0341 27 6 1.2411 -4.8397 0.3311 28 1 -0.3633 0.4512 0.9233 29 1 -0.3634 0.5739 -0.8525 30 1 -0.3633 -1.0252 -0.0709 31 1 3.0828 1.3432 -0.0708 32 1 1.5897 1.9163 -0.8525 33 1 1.7044 1.8723 0.9233 34 1 1.5612 -0.3873 2.0627 35 1 3.0798 -0.6611 1.1755 36 1 0.5533 -2.3389 0.8432 37 1 1.9439 -2.7964 1.8556 38 1 3.3409 -4.0619 -2.2024 39 1 2.9464 -6.4322 -2.7341 40 1 1.8257 -8.4933 -2.1507 41 1 0.9005 -8.9165 0.4842 42 1 -0.4862 -8.4496 -0.5293 43 1 0.0281 -11.1306 0.8715 44 1 -1.4232 -10.8287 -0.1138 45 1 -1.5033 -15.5214 0.1742 46 1 0.3670 -6.7615 0.6602 47 1 0.7638 -4.3911 1.1898 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000819453644.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:41:32 Heat of formation + Delta-G solvation = -1.558204 kcal Electronic energy + Delta-G solvation = -24951.447200 eV Core-core repulsion = 21326.752663 eV Total energy + Delta-G solvation = -3624.694538 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.96968 -39.48813 -38.53994 -37.73028 -36.11265 -35.14449 -33.49838 -31.93276 -31.19047 -29.75318 -28.48521 -27.80061 -25.55635 -25.08350 -23.53327 -23.13425 -22.23994 -21.61402 -19.09766 -18.94547 -18.57695 -17.78877 -17.26585 -17.01577 -16.36444 -16.10246 -15.84753 -15.58627 -15.50890 -15.30952 -15.14098 -14.81572 -14.50558 -14.32365 -14.14633 -13.97618 -13.85146 -13.49499 -13.40098 -13.25313 -13.20060 -13.07950 -12.96800 -12.64344 -12.60299 -12.52536 -12.17044 -11.98647 -11.74256 -11.71523 -11.68155 -11.43093 -11.33929 -10.73549 -10.31204 -9.82399 -9.25327 -8.24450 -7.92660 -6.30550 0.51632 0.82516 1.45163 1.45758 1.56741 1.91695 1.95256 2.41625 2.45061 2.62414 3.01110 3.04378 3.10613 3.18324 3.89382 3.93231 4.06264 4.09411 4.14790 4.27467 4.29502 4.41280 4.46997 4.49028 4.53237 4.56722 4.65862 4.67480 4.73873 4.76729 4.84513 4.87644 4.90357 5.03940 5.04867 5.15614 5.22814 5.28693 5.42220 5.47405 5.58387 5.63267 5.82937 6.07855 6.10057 6.23797 6.44642 6.71012 6.74377 6.79128 6.91338 7.34077 8.92204 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.022473 B = 0.002044 C = 0.001951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1245.639653 B =13694.745561 C =14349.358938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.564 5.564 3 C 0.026 3.974 4 C 0.057 3.943 5 C 0.059 3.941 6 O -0.320 6.320 7 C 0.057 3.943 8 C -0.114 4.114 9 C -0.164 4.164 10 C 0.176 3.824 11 N -0.752 5.752 12 C 0.142 3.858 13 C 0.016 3.984 14 H 0.126 0.874 15 C 0.248 3.752 16 N -0.503 5.503 17 C -0.002 4.002 18 C -0.532 4.532 19 H 0.030 0.970 20 C 0.002 3.998 21 N -0.954 5.954 22 Si 0.946 3.054 23 H -0.278 1.278 24 H -0.292 1.292 25 H -0.219 1.219 26 C -0.167 4.167 27 C -0.162 4.162 28 H 0.036 0.964 29 H 0.070 0.930 30 H 0.063 0.937 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.033 0.967 34 H 0.072 0.928 35 H 0.085 0.915 36 H 0.062 0.938 37 H 0.076 0.924 38 H 0.132 0.868 39 H 0.135 0.865 40 H 0.400 0.600 41 H 0.103 0.897 42 H 0.066 0.934 43 H 0.070 0.930 44 H 0.029 0.971 45 H 0.264 0.736 46 H 0.137 0.863 47 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.192 32.233 8.336 34.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.289 5.289 3 C -0.122 4.122 4 C -0.071 4.071 5 C -0.016 4.016 6 O -0.234 6.234 7 C 0.011 3.989 8 C -0.133 4.133 9 C -0.186 4.186 10 C 0.074 3.926 11 N -0.383 5.383 12 C 0.017 3.983 13 C -0.006 4.006 14 H 0.143 0.857 15 C -0.069 4.069 16 N -0.180 5.180 17 C -0.041 4.041 18 C -0.570 4.570 19 H 0.048 0.952 20 C -0.195 4.195 21 N -0.594 5.594 22 Si 0.769 3.231 23 H -0.203 1.203 24 H -0.218 1.218 25 H -0.141 1.141 26 C -0.190 4.190 27 C -0.181 4.181 28 H 0.054 0.946 29 H 0.089 0.911 30 H 0.082 0.918 31 H 0.088 0.912 32 H 0.089 0.911 33 H 0.052 0.948 34 H 0.090 0.910 35 H 0.103 0.897 36 H 0.081 0.919 37 H 0.094 0.906 38 H 0.150 0.850 39 H 0.152 0.848 40 H 0.235 0.765 41 H 0.121 0.879 42 H 0.085 0.915 43 H 0.088 0.912 44 H 0.047 0.953 45 H 0.073 0.927 46 H 0.155 0.845 47 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 6.549 31.938 6.442 33.233 hybrid contribution -0.681 -0.697 0.950 1.361 sum 5.868 31.240 7.392 32.635 Atomic orbital electron populations 1.22449 0.86955 1.02216 1.01100 1.61916 1.08551 1.14790 1.43618 1.22391 1.00951 0.87843 1.01005 1.22212 1.01629 0.90925 0.92328 1.22960 0.97045 0.94288 0.87319 1.86114 1.68180 1.22059 1.47065 1.18918 0.99171 0.84016 0.96765 1.20277 1.01745 0.94506 0.96804 1.20568 1.02532 0.93674 1.01860 1.17887 0.95471 0.84625 0.94628 1.44693 1.53124 1.07731 1.32773 1.21382 0.94769 0.86766 0.95426 1.19264 1.00543 0.97237 0.83567 0.85669 1.29492 0.92337 0.90460 0.94569 1.80953 1.11139 1.11380 1.14567 1.19575 0.96186 0.92044 0.96290 1.21384 1.31567 0.93127 1.10928 0.95206 1.26048 0.97296 0.94524 1.01592 1.70086 1.44653 1.02578 1.42117 0.85719 0.79082 0.79437 0.78822 1.20336 1.21779 1.14073 1.20687 1.04197 0.95502 0.98579 1.21163 1.01083 0.94562 1.01288 0.94591 0.91131 0.91838 0.91161 0.91080 0.94827 0.90964 0.89691 0.91941 0.90570 0.84988 0.84750 0.76545 0.87920 0.91549 0.91158 0.95253 0.92697 0.84516 0.84126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 9.33 127.69 1.19 1.44 16 2 N -0.56 -8.12 4.97 -948.85 -4.71 -12.83 16 3 C 0.03 0.27 9.57 127.69 1.22 1.50 16 4 C 0.06 0.68 5.34 86.30 0.46 1.14 16 5 C 0.06 0.85 4.80 71.98 0.35 1.19 16 6 O -0.32 -6.82 10.09 -93.51 -0.94 -7.77 16 7 C 0.06 1.28 6.69 22.49 0.15 1.43 16 8 C -0.11 -2.56 9.98 22.35 0.22 -2.33 16 9 C -0.16 -3.63 9.89 22.39 0.22 -3.41 16 10 C 0.18 4.04 6.66 38.14 0.25 4.29 16 11 N -0.75 -17.01 5.53 -339.27 -1.88 -18.89 16 12 C 0.14 3.24 4.28 86.38 0.37 3.61 16 13 C 0.02 0.48 2.26 -12.60 -0.03 0.45 16 14 H 0.13 3.58 8.14 -2.39 -0.02 3.56 16 15 C 0.25 9.39 13.44 89.47 1.20 10.60 16 16 N -0.50 -21.70 18.52 19.98 0.37 -21.33 16 17 C 0.00 -0.07 3.49 29.85 0.10 0.03 16 18 C -0.53 -27.77 9.15 25.60 0.23 -27.53 16 19 H 0.03 1.77 7.84 -2.91 -0.02 1.74 16 20 C 0.00 0.12 5.47 84.66 0.46 0.58 16 21 N -0.95 -58.21 13.96 21.45 0.30 -57.91 16 22 Si 0.95 40.26 27.47 68.60 1.88 42.14 16 23 H -0.28 -11.80 7.11 99.48 0.71 -11.09 16 24 H -0.29 -12.58 7.11 99.48 0.71 -11.87 16 25 H -0.22 -7.73 6.54 99.48 0.65 -7.08 16 26 C -0.17 -3.55 9.31 22.39 0.21 -3.34 16 27 C -0.16 -3.25 9.03 22.35 0.20 -3.04 16 28 H 0.04 0.35 8.14 -2.39 -0.02 0.33 16 29 H 0.07 0.82 8.12 -2.39 -0.02 0.80 16 30 H 0.06 0.85 6.37 -2.39 -0.02 0.84 16 31 H 0.07 0.71 8.12 -2.38 -0.02 0.69 16 32 H 0.07 0.70 8.12 -2.39 -0.02 0.68 16 33 H 0.03 0.28 8.14 -2.39 -0.02 0.26 16 34 H 0.07 0.59 8.12 -2.39 -0.02 0.57 16 35 H 0.08 1.02 8.06 -2.38 -0.02 1.00 16 36 H 0.06 0.85 5.85 -2.39 -0.01 0.84 16 37 H 0.08 0.86 7.66 -2.39 -0.02 0.85 16 38 H 0.13 2.67 8.06 -2.91 -0.02 2.65 16 39 H 0.13 2.58 8.06 -2.91 -0.02 2.56 16 40 H 0.40 8.87 8.23 -92.71 -0.76 8.11 16 41 H 0.10 1.91 7.94 -2.39 -0.02 1.89 16 42 H 0.07 1.52 7.96 -2.39 -0.02 1.50 16 43 H 0.07 2.33 7.20 -2.38 -0.02 2.31 16 44 H 0.03 1.10 7.57 -2.39 -0.02 1.08 16 45 H 0.26 15.16 8.31 -92.71 -0.77 14.39 16 46 H 0.14 2.51 6.73 -2.92 -0.02 2.49 16 47 H 0.14 2.15 6.29 -2.91 -0.02 2.13 16 Total: -1.00 -70.75 388.99 1.99 -68.75 By element: Atomic # 1 Polarization: 21.07 SS G_CDS: 0.15 Total: 21.22 kcal Atomic # 6 Polarization: -20.22 SS G_CDS: 6.82 Total: -13.39 kcal Atomic # 7 Polarization: -105.04 SS G_CDS: -5.92 Total: -110.96 kcal Atomic # 8 Polarization: -6.82 SS G_CDS: -0.94 Total: -7.77 kcal Atomic # 14 Polarization: 40.26 SS G_CDS: 1.88 Total: 42.14 kcal Total: -70.75 1.99 -68.75 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000819453644.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.196 kcal (2) G-P(sol) polarization free energy of solvation -70.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.754 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds