Wall clock time and date at job start Tue Mar 31 2020 11:41:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46908 * 111.00092 * 2 1 4 4 C 1.46895 * 111.00292 * 123.95711 * 2 1 3 5 5 C 1.52998 * 109.47126 * 66.04396 * 4 2 1 6 6 O 1.42897 * 109.47273 * 65.00278 * 5 4 2 7 7 C 1.36004 * 117.00512 * 179.97438 * 6 5 4 8 8 C 1.38694 * 119.98443 * 179.97438 * 7 6 5 9 9 C 1.38110 * 120.02060 * 180.02562 * 8 7 6 10 10 C 1.38856 * 119.97871 * 359.97218 * 9 8 7 11 11 N 1.39944 * 120.01877 * 180.02562 * 10 9 8 12 12 C 1.46500 * 120.00023 * 180.02562 * 11 10 9 13 13 C 1.52996 * 109.46949 * 179.97438 * 12 11 10 14 14 H 1.09000 * 109.47753 * 305.00252 * 13 12 11 15 15 C 1.47204 * 109.47042 * 65.00020 * 13 12 11 16 16 N 9.46250 * 138.28261 * 238.25079 * 5 1 2 17 17 C 1.52996 * 109.47153 * 184.99976 * 13 12 11 18 18 C 1.50702 * 109.47159 * 175.00123 * 17 13 12 19 19 H 1.08002 * 120.00299 * 0.02562 * 18 17 13 20 20 C 1.37884 * 119.99942 * 179.72211 * 18 17 13 21 21 N 1.31514 * 119.99698 * 0.28408 * 20 18 17 22 22 Si 1.86794 * 119.99837 * 180.27476 * 20 18 17 23 23 H 1.48504 * 109.47196 * 60.00645 * 22 20 18 24 24 H 1.48504 * 109.46887 * 180.02562 * 22 20 18 25 25 H 1.48502 * 109.47679 * 300.00280 * 22 20 18 26 26 C 1.38862 * 119.96552 * 0.28095 * 10 9 8 27 27 C 1.38117 * 119.97550 * 359.46990 * 26 10 9 28 28 H 1.08996 * 109.47015 * 296.04851 * 1 2 3 29 29 H 1.09004 * 109.46809 * 56.04267 * 1 2 3 30 30 H 1.08995 * 109.46994 * 176.04302 * 1 2 3 31 31 H 1.09000 * 109.47292 * 183.95560 * 3 2 1 32 32 H 1.09000 * 109.46792 * 303.95805 * 3 2 1 33 33 H 1.09000 * 109.46761 * 63.95789 * 3 2 1 34 34 H 1.09002 * 109.46813 * 306.04810 * 4 2 1 35 35 H 1.09000 * 109.47612 * 186.05017 * 4 2 1 36 36 H 1.08996 * 109.47327 * 305.00107 * 5 4 2 37 37 H 1.09003 * 109.47377 * 185.00349 * 5 4 2 38 38 H 1.08006 * 119.98638 * 0.02562 * 8 7 6 39 39 H 1.08002 * 120.00513 * 179.97438 * 9 8 7 40 40 H 0.97002 * 119.99373 * 0.02562 * 11 10 9 41 41 H 1.08997 * 109.46786 * 60.00129 * 12 11 10 42 42 H 1.08996 * 109.47381 * 300.00327 * 12 11 10 43 43 H 1.09004 * 109.47066 * 55.00326 * 17 13 12 44 44 H 1.08994 * 109.47405 * 295.00156 * 17 13 12 45 45 H 0.97005 * 119.99651 * 179.97438 * 21 20 18 46 46 H 1.07998 * 120.01139 * 179.70123 * 26 10 9 47 47 H 1.07994 * 119.98568 * 180.25273 * 27 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.9955 -0.7660 1.1375 5 6 1.6315 -2.2426 0.9702 6 8 2.2955 -2.7696 -0.1801 7 6 2.0781 -4.0799 -0.4726 8 6 2.6913 -4.6549 -1.5757 9 6 2.4706 -5.9853 -1.8737 10 6 1.6348 -6.7473 -1.0681 11 7 1.4110 -8.0956 -1.3690 12 6 0.5288 -8.8991 -0.5191 13 6 0.4563 -10.3265 -1.0648 14 1 0.1478 -10.3008 -2.1100 15 6 1.7810 -10.9598 -0.9598 16 7 2.7979 -11.4486 -0.8813 17 6 -0.5599 -11.1320 -0.2528 18 6 -0.7220 -12.4993 -0.8654 19 1 -0.1564 -12.7672 -1.7457 20 6 -1.5877 -13.4105 -0.2985 21 7 -2.2761 -13.0844 0.7735 22 14 -1.7828 -15.1080 -1.0534 23 1 -0.4722 -15.8063 -1.0468 24 1 -2.7656 -15.8915 -0.2624 25 1 -2.2661 -14.9757 -2.4513 26 6 1.0171 -6.1695 0.0331 27 6 1.2430 -4.8402 0.3326 28 1 -0.3633 0.4513 0.9232 29 1 -0.3633 0.5741 -0.8524 30 1 -0.3633 -1.0252 -0.0709 31 1 3.0828 1.3433 -0.0709 32 1 1.5897 1.9164 -0.8524 33 1 1.7044 1.8723 0.9233 34 1 1.5611 -0.3873 2.0627 35 1 3.0797 -0.6611 1.1756 36 1 0.5532 -2.3389 0.8432 37 1 1.9438 -2.7964 1.8555 38 1 3.3417 -4.0620 -2.2019 39 1 2.9479 -6.4327 -2.7330 40 1 1.8401 -8.4980 -2.1402 41 1 -0.4693 -8.4610 -0.5148 42 1 0.9216 -8.9178 0.4974 43 1 -1.5199 -10.6157 -0.2575 44 1 -0.2068 -11.2332 0.7733 45 1 -2.8854 -13.7254 1.1722 46 1 0.3631 -6.7602 0.6574 47 1 0.7659 -4.3918 1.1913 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000819453645.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:41:37 Heat of formation + Delta-G solvation = 15.073998 kcal Electronic energy + Delta-G solvation = -24880.239329 eV Core-core repulsion = 21256.266018 eV Total energy + Delta-G solvation = -3623.973311 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.10002 -38.55874 -37.51468 -36.69654 -34.77572 -33.51671 -31.74394 -31.06265 -30.38864 -28.23483 -27.96931 -26.22273 -24.88384 -23.88317 -22.54847 -21.88041 -21.29210 -20.90810 -18.22892 -17.34947 -16.66591 -16.63465 -16.57266 -15.88866 -15.51884 -15.16041 -14.85237 -14.74240 -14.52642 -14.27368 -13.83320 -13.40104 -13.30813 -13.09857 -12.95862 -12.80868 -12.69534 -12.53683 -12.32895 -12.20340 -12.10987 -12.10426 -11.80946 -11.49990 -11.40602 -11.15242 -10.99620 -10.82176 -10.65137 -10.59397 -10.37669 -9.69419 -9.38339 -9.33300 -8.90591 -8.72529 -8.51256 -6.96567 -6.15715 -4.19624 1.43236 1.76872 3.21516 3.27287 3.31959 3.34975 3.49453 3.53920 3.54823 3.69558 3.96269 4.35927 4.53752 4.65972 4.67497 4.79594 4.92075 4.94308 4.97204 5.02728 5.08838 5.16960 5.22370 5.24510 5.27553 5.39236 5.42510 5.49279 5.55627 5.60028 5.60990 5.65876 5.97390 6.03233 6.14815 6.27054 6.34132 6.43313 6.50404 6.58953 6.61138 6.75287 7.32971 7.40158 7.42430 7.60822 7.78304 7.89673 8.14467 8.31748 8.84125 9.46236 10.94974 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.027073 B = 0.001910 C = 0.001831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1033.980967 B =14655.296250 C =15288.804651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.540 5.540 3 C 0.025 3.975 4 C 0.055 3.945 5 C 0.065 3.935 6 O -0.304 6.304 7 C 0.064 3.936 8 C -0.102 4.102 9 C -0.161 4.161 10 C 0.191 3.809 11 N -0.750 5.750 12 C 0.133 3.867 13 C -0.003 4.003 14 H 0.108 0.892 15 C 0.239 3.761 16 N -0.467 5.467 17 C 0.034 3.966 18 C -0.530 4.530 19 H 0.056 0.944 20 C 0.064 3.936 21 N -0.890 5.890 22 Si 0.893 3.107 23 H -0.277 1.277 24 H -0.286 1.286 25 H -0.275 1.275 26 C -0.160 4.160 27 C -0.160 4.160 28 H 0.024 0.976 29 H 0.069 0.931 30 H 0.071 0.929 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.023 0.977 34 H 0.053 0.947 35 H 0.086 0.914 36 H 0.060 0.940 37 H 0.062 0.938 38 H 0.126 0.874 39 H 0.124 0.876 40 H 0.398 0.602 41 H 0.078 0.922 42 H 0.063 0.937 43 H 0.042 0.958 44 H 0.028 0.972 45 H 0.264 0.736 46 H 0.126 0.874 47 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.769 27.226 -0.266 27.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.264 5.264 3 C -0.123 4.123 4 C -0.073 4.073 5 C -0.011 4.011 6 O -0.218 6.218 7 C 0.018 3.982 8 C -0.121 4.121 9 C -0.183 4.183 10 C 0.088 3.912 11 N -0.381 5.381 12 C 0.008 3.992 13 C -0.025 4.025 14 H 0.125 0.875 15 C -0.078 4.078 16 N -0.143 5.143 17 C -0.004 4.004 18 C -0.568 4.568 19 H 0.075 0.925 20 C -0.139 4.139 21 N -0.528 5.528 22 Si 0.721 3.279 23 H -0.202 1.202 24 H -0.211 1.211 25 H -0.200 1.200 26 C -0.182 4.182 27 C -0.179 4.179 28 H 0.043 0.957 29 H 0.088 0.912 30 H 0.090 0.910 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.042 0.958 34 H 0.071 0.929 35 H 0.104 0.896 36 H 0.078 0.922 37 H 0.080 0.920 38 H 0.144 0.856 39 H 0.142 0.858 40 H 0.232 0.768 41 H 0.096 0.904 42 H 0.081 0.919 43 H 0.060 0.940 44 H 0.046 0.954 45 H 0.074 0.926 46 H 0.144 0.856 47 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 6.312 26.238 -0.401 26.989 hybrid contribution -0.919 -0.768 0.322 1.240 sum 5.393 25.470 -0.079 26.035 Atomic orbital electron populations 1.22476 0.87310 1.02627 1.00471 1.61923 1.07969 1.13694 1.42797 1.22388 1.00954 0.88571 1.00406 1.22190 1.01572 0.91740 0.91777 1.22730 0.97036 0.93473 0.87883 1.86124 1.67711 1.22318 1.45682 1.18723 0.99257 0.83545 0.96660 1.20075 1.01311 0.94280 0.96434 1.20399 1.02732 0.93592 1.01615 1.17766 0.94748 0.84666 0.94054 1.44842 1.53345 1.07301 1.32568 1.21483 0.94441 0.89099 0.94212 1.19475 0.86707 0.92169 1.04188 0.87453 1.28892 0.93907 0.92598 0.92392 1.80829 1.13945 1.09953 1.09595 1.19147 0.92206 0.94177 0.94913 1.21070 1.24884 0.98024 1.12857 0.92539 1.24949 0.95439 0.98699 0.94808 1.69923 1.26600 1.35732 1.20546 0.86632 0.78003 0.83987 0.79328 1.20239 1.21133 1.20016 1.20498 1.04022 0.95049 0.98673 1.20953 1.01381 0.94813 1.00754 0.95705 0.91189 0.91014 0.91217 0.91249 0.95816 0.92863 0.89579 0.92182 0.91958 0.85646 0.85799 0.76794 0.90376 0.91858 0.94008 0.95360 0.92644 0.85590 0.86082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.13 9.33 60.06 0.56 0.69 16 2 N -0.54 -4.38 4.97 -251.26 -1.25 -5.62 16 3 C 0.02 0.15 9.57 60.07 0.57 0.73 16 4 C 0.06 0.40 5.34 -3.83 -0.02 0.38 16 5 C 0.06 0.55 4.80 37.16 0.18 0.73 16 6 O -0.30 -3.57 10.09 -19.75 -0.20 -3.77 16 7 C 0.06 0.79 6.69 -39.24 -0.26 0.53 16 8 C -0.10 -1.24 9.98 -39.46 -0.39 -1.63 16 9 C -0.16 -1.96 9.89 -39.40 -0.39 -2.35 16 10 C 0.19 2.50 6.66 -83.69 -0.56 1.94 16 11 N -0.75 -9.83 5.53 -58.59 -0.32 -10.16 16 12 C 0.13 1.88 4.28 -4.04 -0.02 1.86 16 13 C 0.00 -0.06 2.26 -93.41 -0.21 -0.27 16 14 H 0.11 1.69 8.14 -51.93 -0.42 1.27 16 15 C 0.24 4.68 13.44 -20.92 -0.28 4.40 16 16 N -0.47 -10.03 18.50 41.96 0.78 -9.25 16 17 C 0.03 0.76 4.42 -27.88 -0.12 0.63 16 18 C -0.53 -13.71 8.60 -34.44 -0.30 -14.00 16 19 H 0.06 1.45 7.59 -52.49 -0.40 1.05 16 20 C 0.06 1.71 5.46 -17.82 -0.10 1.62 16 21 N -0.89 -24.92 13.29 55.43 0.74 -24.19 16 22 Si 0.89 20.93 29.54 -169.99 -5.02 15.91 16 23 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 24 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 25 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 26 C -0.16 -2.03 9.31 -39.39 -0.37 -2.39 16 27 C -0.16 -1.88 9.03 -39.46 -0.36 -2.24 16 28 H 0.02 0.15 8.14 -51.93 -0.42 -0.28 16 29 H 0.07 0.44 8.12 -51.93 -0.42 0.02 16 30 H 0.07 0.53 6.37 -51.93 -0.33 0.20 16 31 H 0.07 0.41 8.12 -51.93 -0.42 -0.01 16 32 H 0.07 0.39 8.12 -51.93 -0.42 -0.03 16 33 H 0.02 0.13 8.14 -51.93 -0.42 -0.30 16 34 H 0.05 0.30 8.12 -51.93 -0.42 -0.12 16 35 H 0.09 0.62 8.06 -51.93 -0.42 0.20 16 36 H 0.06 0.49 5.85 -51.93 -0.30 0.18 16 37 H 0.06 0.47 7.66 -51.93 -0.40 0.07 16 38 H 0.13 1.35 8.06 -52.48 -0.42 0.93 16 39 H 0.12 1.30 8.06 -52.49 -0.42 0.88 16 40 H 0.40 4.93 8.23 -40.82 -0.34 4.59 16 41 H 0.08 1.02 7.94 -51.93 -0.41 0.61 16 42 H 0.06 0.92 7.96 -51.93 -0.41 0.51 16 43 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 44 H 0.03 0.68 8.14 -51.93 -0.42 0.25 16 45 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 46 H 0.13 1.51 6.73 -52.49 -0.35 1.15 16 47 H 0.12 1.17 6.29 -52.49 -0.33 0.84 16 LS Contribution 392.57 15.07 5.92 5.92 Total: -1.00 -30.65 392.57 -8.90 -39.55 By element: Atomic # 1 Polarization: 8.45 SS G_CDS: -7.48 Total: 0.98 kcal Atomic # 6 Polarization: -7.31 SS G_CDS: -2.06 Total: -9.36 kcal Atomic # 7 Polarization: -49.16 SS G_CDS: -0.06 Total: -49.22 kcal Atomic # 8 Polarization: -3.57 SS G_CDS: -0.20 Total: -3.77 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -30.65 -8.90 -39.55 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000819453645.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.623 kcal (2) G-P(sol) polarization free energy of solvation -30.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.549 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds