Wall clock time and date at job start Tue Mar 31 2020 11:41:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46908 * 111.00092 * 2 1 4 4 C 1.46895 * 111.00292 * 123.95711 * 2 1 3 5 5 C 1.52998 * 109.47126 * 66.04396 * 4 2 1 6 6 O 1.42897 * 109.47273 * 65.00278 * 5 4 2 7 7 C 1.36004 * 117.00512 * 179.97438 * 6 5 4 8 8 C 1.38694 * 119.98443 * 179.97438 * 7 6 5 9 9 C 1.38110 * 120.02060 * 180.02562 * 8 7 6 10 10 C 1.38856 * 119.97871 * 359.97218 * 9 8 7 11 11 N 1.39944 * 120.01877 * 180.02562 * 10 9 8 12 12 C 1.46500 * 120.00023 * 180.02562 * 11 10 9 13 13 C 1.52996 * 109.46949 * 179.97438 * 12 11 10 14 14 H 1.09000 * 109.47753 * 305.00252 * 13 12 11 15 15 C 1.47204 * 109.47042 * 65.00020 * 13 12 11 16 16 N 9.46250 * 138.28261 * 238.25079 * 5 1 2 17 17 C 1.52996 * 109.47153 * 184.99976 * 13 12 11 18 18 C 1.50702 * 109.47159 * 175.00123 * 17 13 12 19 19 H 1.08002 * 120.00299 * 0.02562 * 18 17 13 20 20 C 1.37884 * 119.99942 * 179.72211 * 18 17 13 21 21 N 1.31514 * 119.99698 * 0.28408 * 20 18 17 22 22 Si 1.86794 * 119.99837 * 180.27476 * 20 18 17 23 23 H 1.48504 * 109.47196 * 60.00645 * 22 20 18 24 24 H 1.48504 * 109.46887 * 180.02562 * 22 20 18 25 25 H 1.48502 * 109.47679 * 300.00280 * 22 20 18 26 26 C 1.38862 * 119.96552 * 0.28095 * 10 9 8 27 27 C 1.38117 * 119.97550 * 359.46990 * 26 10 9 28 28 H 1.08996 * 109.47015 * 296.04851 * 1 2 3 29 29 H 1.09004 * 109.46809 * 56.04267 * 1 2 3 30 30 H 1.08995 * 109.46994 * 176.04302 * 1 2 3 31 31 H 1.09000 * 109.47292 * 183.95560 * 3 2 1 32 32 H 1.09000 * 109.46792 * 303.95805 * 3 2 1 33 33 H 1.09000 * 109.46761 * 63.95789 * 3 2 1 34 34 H 1.09002 * 109.46813 * 306.04810 * 4 2 1 35 35 H 1.09000 * 109.47612 * 186.05017 * 4 2 1 36 36 H 1.08996 * 109.47327 * 305.00107 * 5 4 2 37 37 H 1.09003 * 109.47377 * 185.00349 * 5 4 2 38 38 H 1.08006 * 119.98638 * 0.02562 * 8 7 6 39 39 H 1.08002 * 120.00513 * 179.97438 * 9 8 7 40 40 H 0.97002 * 119.99373 * 0.02562 * 11 10 9 41 41 H 1.08997 * 109.46786 * 60.00129 * 12 11 10 42 42 H 1.08996 * 109.47381 * 300.00327 * 12 11 10 43 43 H 1.09004 * 109.47066 * 55.00326 * 17 13 12 44 44 H 1.08994 * 109.47405 * 295.00156 * 17 13 12 45 45 H 0.97005 * 119.99651 * 179.97438 * 21 20 18 46 46 H 1.07998 * 120.01139 * 179.70123 * 26 10 9 47 47 H 1.07994 * 119.98568 * 180.25273 * 27 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.9955 -0.7660 1.1375 5 6 1.6315 -2.2426 0.9702 6 8 2.2955 -2.7696 -0.1801 7 6 2.0781 -4.0799 -0.4726 8 6 2.6913 -4.6549 -1.5757 9 6 2.4706 -5.9853 -1.8737 10 6 1.6348 -6.7473 -1.0681 11 7 1.4110 -8.0956 -1.3690 12 6 0.5288 -8.8991 -0.5191 13 6 0.4563 -10.3265 -1.0648 14 1 0.1478 -10.3008 -2.1100 15 6 1.7810 -10.9598 -0.9598 16 7 2.7979 -11.4486 -0.8813 17 6 -0.5599 -11.1320 -0.2528 18 6 -0.7220 -12.4993 -0.8654 19 1 -0.1564 -12.7672 -1.7457 20 6 -1.5877 -13.4105 -0.2985 21 7 -2.2761 -13.0844 0.7735 22 14 -1.7828 -15.1080 -1.0534 23 1 -0.4722 -15.8063 -1.0468 24 1 -2.7656 -15.8915 -0.2624 25 1 -2.2661 -14.9757 -2.4513 26 6 1.0171 -6.1695 0.0331 27 6 1.2430 -4.8402 0.3326 28 1 -0.3633 0.4513 0.9232 29 1 -0.3633 0.5741 -0.8524 30 1 -0.3633 -1.0252 -0.0709 31 1 3.0828 1.3433 -0.0709 32 1 1.5897 1.9164 -0.8524 33 1 1.7044 1.8723 0.9233 34 1 1.5611 -0.3873 2.0627 35 1 3.0797 -0.6611 1.1756 36 1 0.5532 -2.3389 0.8432 37 1 1.9438 -2.7964 1.8555 38 1 3.3417 -4.0620 -2.2019 39 1 2.9479 -6.4327 -2.7330 40 1 1.8401 -8.4980 -2.1402 41 1 -0.4693 -8.4610 -0.5148 42 1 0.9216 -8.9178 0.4974 43 1 -1.5199 -10.6157 -0.2575 44 1 -0.2068 -11.2332 0.7733 45 1 -2.8854 -13.7254 1.1722 46 1 0.3631 -6.7602 0.6574 47 1 0.7659 -4.3918 1.1913 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000819453645.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:41:36 Heat of formation + Delta-G solvation = -3.197683 kcal Electronic energy + Delta-G solvation = -24881.031649 eV Core-core repulsion = 21256.266018 eV Total energy + Delta-G solvation = -3624.765631 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.97508 -39.48254 -38.52937 -37.72965 -36.12361 -35.20153 -33.30907 -31.94057 -31.14813 -29.47820 -28.47167 -27.65606 -25.55875 -25.15669 -23.82865 -23.16191 -22.26734 -21.61214 -19.09276 -18.68639 -18.40376 -17.80210 -17.26609 -16.94485 -16.50523 -16.15564 -15.91932 -15.55481 -15.51178 -15.35704 -14.96605 -14.76441 -14.41584 -14.25255 -14.16316 -13.91780 -13.76961 -13.46784 -13.41639 -13.21500 -13.13402 -13.06443 -12.92498 -12.62099 -12.54636 -12.52957 -12.41772 -12.14597 -12.06476 -11.73273 -11.50847 -11.41311 -11.22420 -10.55068 -10.32348 -9.83118 -9.24725 -8.19834 -7.93601 -6.27914 0.50820 0.81764 1.41651 1.43134 1.49859 1.94419 1.97141 2.39796 2.45427 2.63148 3.00853 3.04338 3.14779 3.20492 3.90031 3.98093 4.06077 4.08708 4.14711 4.28104 4.32291 4.41225 4.47077 4.49901 4.52704 4.64327 4.66838 4.67767 4.74392 4.77354 4.87672 4.88198 4.94757 5.04664 5.06505 5.14653 5.28820 5.45778 5.47405 5.57953 5.60230 5.77917 5.82035 6.07975 6.11060 6.16858 6.42735 6.71622 6.73723 6.85556 6.93309 7.40643 8.90682 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.027073 B = 0.001910 C = 0.001831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1033.980967 B =14655.296250 C =15288.804651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.563 5.563 3 C 0.026 3.974 4 C 0.057 3.943 5 C 0.059 3.941 6 O -0.318 6.318 7 C 0.058 3.942 8 C -0.112 4.112 9 C -0.162 4.162 10 C 0.175 3.825 11 N -0.749 5.749 12 C 0.146 3.854 13 C 0.011 3.989 14 H 0.129 0.871 15 C 0.252 3.748 16 N -0.501 5.501 17 C 0.039 3.961 18 C -0.541 4.541 19 H 0.055 0.945 20 C 0.012 3.988 21 N -0.921 5.921 22 Si 0.948 3.052 23 H -0.282 1.282 24 H -0.283 1.283 25 H -0.263 1.263 26 C -0.170 4.170 27 C -0.162 4.162 28 H 0.035 0.965 29 H 0.071 0.929 30 H 0.063 0.937 31 H 0.069 0.931 32 H 0.072 0.928 33 H 0.033 0.967 34 H 0.072 0.928 35 H 0.084 0.916 36 H 0.064 0.936 37 H 0.073 0.927 38 H 0.135 0.865 39 H 0.138 0.862 40 H 0.401 0.599 41 H 0.093 0.907 42 H 0.058 0.942 43 H 0.041 0.959 44 H 0.004 0.996 45 H 0.264 0.736 46 H 0.131 0.869 47 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.649 28.334 -0.703 28.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.288 5.288 3 C -0.122 4.122 4 C -0.071 4.071 5 C -0.016 4.016 6 O -0.233 6.233 7 C 0.012 3.988 8 C -0.131 4.131 9 C -0.184 4.184 10 C 0.073 3.927 11 N -0.381 5.381 12 C 0.020 3.980 13 C -0.011 4.011 14 H 0.147 0.853 15 C -0.065 4.065 16 N -0.178 5.178 17 C 0.000 4.000 18 C -0.579 4.579 19 H 0.074 0.926 20 C -0.187 4.187 21 N -0.561 5.561 22 Si 0.773 3.227 23 H -0.208 1.208 24 H -0.209 1.209 25 H -0.188 1.188 26 C -0.193 4.193 27 C -0.181 4.181 28 H 0.053 0.947 29 H 0.090 0.910 30 H 0.082 0.918 31 H 0.088 0.912 32 H 0.090 0.910 33 H 0.051 0.949 34 H 0.090 0.910 35 H 0.102 0.898 36 H 0.082 0.918 37 H 0.091 0.909 38 H 0.153 0.847 39 H 0.156 0.844 40 H 0.236 0.764 41 H 0.111 0.889 42 H 0.076 0.924 43 H 0.059 0.941 44 H 0.023 0.977 45 H 0.073 0.927 46 H 0.149 0.851 47 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 6.199 27.369 -0.850 28.075 hybrid contribution -0.859 -1.020 0.478 1.417 sum 5.339 26.349 -0.371 26.887 Atomic orbital electron populations 1.22456 0.86879 1.02271 1.01131 1.61918 1.08611 1.14767 1.43497 1.22394 1.00931 0.87836 1.01033 1.22200 1.01595 0.90870 0.92387 1.22956 0.97132 0.94308 0.87247 1.86112 1.68225 1.21948 1.46999 1.18912 0.99153 0.84003 0.96747 1.20293 1.01591 0.94503 0.96754 1.20575 1.02391 0.93594 1.01871 1.17902 0.95513 0.84590 0.94669 1.44678 1.53500 1.07322 1.32603 1.21271 0.95556 0.87328 0.93836 1.19379 0.84124 0.92929 1.04691 0.85303 1.29306 0.94065 0.91795 0.91324 1.80834 1.15179 1.11007 1.10800 1.18966 0.93437 0.93499 0.94083 1.21514 1.24101 0.99642 1.12654 0.92628 1.25693 0.95615 1.02035 0.95360 1.70018 1.27484 1.36803 1.21776 0.85764 0.77566 0.80172 0.79149 1.20771 1.20855 1.18790 1.20672 1.04247 0.95566 0.98783 1.21144 1.01212 0.94520 1.01239 0.94659 0.90971 0.91797 0.91210 0.90950 0.94874 0.91014 0.89751 0.91802 0.90895 0.84700 0.84417 0.76381 0.88896 0.92388 0.94071 0.97737 0.92703 0.85147 0.84286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 9.33 127.69 1.19 1.45 16 2 N -0.56 -8.40 4.97 -948.86 -4.71 -13.11 16 3 C 0.03 0.28 9.57 127.69 1.22 1.51 16 4 C 0.06 0.74 5.34 86.30 0.46 1.20 16 5 C 0.06 0.92 4.80 71.98 0.35 1.27 16 6 O -0.32 -7.13 10.09 -93.59 -0.94 -8.08 16 7 C 0.06 1.37 6.69 22.49 0.15 1.52 16 8 C -0.11 -2.60 9.98 22.35 0.22 -2.38 16 9 C -0.16 -3.73 9.89 22.39 0.22 -3.51 16 10 C 0.18 4.36 6.66 38.14 0.25 4.62 16 11 N -0.75 -18.47 5.53 -339.28 -1.88 -20.34 16 12 C 0.15 3.90 4.28 86.38 0.37 4.27 16 13 C 0.01 0.35 2.26 -12.60 -0.03 0.32 16 14 H 0.13 3.77 8.14 -2.39 -0.02 3.75 16 15 C 0.25 9.63 13.44 89.50 1.20 10.83 16 16 N -0.50 -21.29 18.50 19.95 0.37 -20.92 16 17 C 0.04 1.71 4.42 29.85 0.13 1.84 16 18 C -0.54 -27.67 8.60 25.60 0.22 -27.45 16 19 H 0.06 2.80 7.59 -2.91 -0.02 2.77 16 20 C 0.01 0.66 5.46 84.66 0.46 1.12 16 21 N -0.92 -51.74 13.29 21.45 0.28 -51.45 16 22 Si 0.95 42.59 29.54 68.60 2.03 44.62 16 23 H -0.28 -12.80 7.11 99.48 0.71 -12.10 16 24 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 25 H -0.26 -11.25 7.11 99.48 0.71 -10.55 16 26 C -0.17 -4.09 9.31 22.39 0.21 -3.89 16 27 C -0.16 -3.60 9.03 22.35 0.20 -3.40 16 28 H 0.03 0.36 8.14 -2.39 -0.02 0.34 16 29 H 0.07 0.84 8.12 -2.39 -0.02 0.82 16 30 H 0.06 0.88 6.37 -2.39 -0.02 0.87 16 31 H 0.07 0.74 8.12 -2.39 -0.02 0.72 16 32 H 0.07 0.73 8.12 -2.39 -0.02 0.71 16 33 H 0.03 0.30 8.14 -2.39 -0.02 0.28 16 34 H 0.07 0.66 8.12 -2.39 -0.02 0.64 16 35 H 0.08 1.11 8.06 -2.39 -0.02 1.09 16 36 H 0.06 0.94 5.85 -2.39 -0.01 0.93 16 37 H 0.07 0.97 7.66 -2.39 -0.02 0.95 16 38 H 0.14 2.77 8.06 -2.91 -0.02 2.75 16 39 H 0.14 2.68 8.06 -2.91 -0.02 2.66 16 40 H 0.40 9.27 8.23 -92.71 -0.76 8.51 16 41 H 0.09 2.25 7.94 -2.39 -0.02 2.24 16 42 H 0.06 1.63 7.96 -2.39 -0.02 1.61 16 43 H 0.04 1.81 8.14 -2.38 -0.02 1.79 16 44 H 0.00 0.21 8.14 -2.39 -0.02 0.19 16 45 H 0.26 14.17 8.31 -92.70 -0.77 13.40 16 46 H 0.13 2.94 6.73 -2.91 -0.02 2.92 16 47 H 0.14 2.46 6.29 -2.91 -0.02 2.44 16 Total: -1.00 -64.21 392.57 2.18 -62.03 By element: Atomic # 1 Polarization: 17.74 SS G_CDS: 0.20 Total: 17.94 kcal Atomic # 6 Polarization: -17.52 SS G_CDS: 6.84 Total: -10.69 kcal Atomic # 7 Polarization: -99.89 SS G_CDS: -5.93 Total: -105.82 kcal Atomic # 8 Polarization: -7.13 SS G_CDS: -0.94 Total: -8.08 kcal Atomic # 14 Polarization: 42.59 SS G_CDS: 2.03 Total: 44.62 kcal Total: -64.21 2.18 -62.03 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000819453645.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.831 kcal (2) G-P(sol) polarization free energy of solvation -64.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.029 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds