Wall clock time and date at job start Tue Mar 31 2020 11:44:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42903 * 113.99768 * 2 1 4 4 C 1.53008 * 109.46860 * 179.97438 * 3 2 1 5 5 N 1.46899 * 109.46792 * 65.00539 * 4 3 2 6 6 C 1.46891 * 111.00391 * 66.04467 * 5 4 3 7 7 C 1.47206 * 109.47235 * 193.95273 * 6 5 4 8 8 N 5.25281 * 118.57280 * 270.89213 * 2 1 3 9 9 C 1.46904 * 110.99966 * 189.99864 * 5 4 3 10 10 C 1.50693 * 109.47328 * 169.99737 * 9 5 4 11 11 C 1.38293 * 119.92589 * 89.99967 * 10 9 5 12 12 C 1.38102 * 120.07322 * 180.02562 * 11 10 9 13 13 C 1.38904 * 119.92935 * 0.02562 * 12 11 10 14 14 N 1.39674 * 120.07613 * 179.97438 * 13 12 11 15 15 C 1.46501 * 120.00040 * 359.97438 * 14 13 12 16 16 C 1.46506 * 119.99862 * 179.97438 * 14 13 12 17 17 C 1.50699 * 109.46928 * 90.00234 * 16 14 13 18 18 H 1.08003 * 119.99963 * 0.02562 * 17 16 14 19 19 C 1.37873 * 119.99865 * 179.97438 * 17 16 14 20 20 N 1.31514 * 120.00518 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 119.99987 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.47000 * 60.00482 * 21 19 17 23 23 H 1.48506 * 109.47330 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.47185 * 300.00291 * 21 19 17 25 25 C 1.38916 * 119.85171 * 0.24753 * 13 12 11 26 26 C 1.38110 * 119.91982 * 359.49716 * 25 13 12 27 27 H 1.08997 * 109.47381 * 299.99865 * 1 2 3 28 28 H 1.09001 * 109.47314 * 59.99938 * 1 2 3 29 29 H 1.09002 * 109.47025 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47081 * 60.00596 * 3 2 1 31 31 H 1.08992 * 109.47380 * 299.99668 * 3 2 1 32 32 H 1.08997 * 109.47267 * 305.00229 * 4 3 2 33 33 H 1.09002 * 109.46709 * 185.00205 * 4 3 2 34 34 H 1.09004 * 109.47239 * 313.94861 * 6 5 4 35 35 H 1.09001 * 109.47469 * 73.95616 * 6 5 4 36 36 H 1.08999 * 109.46906 * 49.99951 * 9 5 4 37 37 H 1.09000 * 109.46737 * 289.99782 * 9 5 4 38 38 H 1.08000 * 119.95995 * 0.04477 * 11 10 9 39 39 H 1.08005 * 120.03290 * 179.97438 * 12 11 10 40 40 H 1.08999 * 109.46532 * 269.99757 * 15 14 13 41 41 H 1.09000 * 109.46877 * 29.99781 * 15 14 13 42 42 H 1.09000 * 109.47251 * 149.99887 * 15 14 13 43 43 H 1.09004 * 109.47073 * 210.00062 * 16 14 13 44 44 H 1.09000 * 109.47212 * 330.00145 * 16 14 13 45 45 H 0.96992 * 120.00316 * 179.97438 * 20 19 17 46 46 H 1.07998 * 120.04002 * 179.72626 * 25 13 12 47 47 H 1.07995 * 119.95873 * 180.25408 * 26 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 7 3.9778 0.5624 -1.2544 6 6 3.6968 1.4348 -2.4022 7 6 3.8358 0.6650 -3.6493 8 7 3.9413 0.0718 -4.6125 9 6 5.4036 0.2134 -1.1950 10 6 5.7630 -0.6356 -2.3870 11 6 6.1954 -0.0361 -3.5558 12 6 6.5251 -0.8111 -4.6502 13 6 6.4215 -2.1943 -4.5763 14 7 6.7536 -2.9812 -5.6815 15 6 7.2113 -2.3478 -6.9207 16 6 6.6443 -4.4400 -5.6016 17 6 5.2637 -4.8645 -6.0316 18 1 4.5403 -4.1220 -6.3347 19 6 4.9246 -6.2008 -6.0393 20 7 5.8056 -7.1051 -5.6708 21 14 3.2131 -6.7270 -6.5717 22 1 2.9728 -6.2880 -7.9698 23 1 3.1022 -8.2057 -6.4908 24 1 2.2035 -6.1057 -5.6773 25 6 5.9814 -2.7931 -3.4026 26 6 5.6583 -2.0123 -2.3101 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.6886 1.8463 0.8900 31 1 1.6886 1.8464 -0.8899 32 1 3.8508 0.5685 0.8426 33 1 3.9784 2.1766 0.0903 34 1 2.6804 1.8209 -2.3250 35 1 4.4018 2.2661 -2.4080 36 1 5.6036 -0.3428 -0.2792 37 1 6.0014 1.1248 -1.2045 38 1 6.2756 1.0395 -3.6126 39 1 6.8623 -0.3422 -5.5628 40 1 6.3534 -2.1361 -7.5588 41 1 7.7267 -1.4169 -6.6840 42 1 7.8944 -3.0191 -7.4411 43 1 7.3856 -4.8964 -6.2575 44 1 6.8201 -4.7618 -4.5751 45 1 5.5668 -8.0451 -5.6758 46 1 5.8955 -3.8680 -3.3433 47 1 5.3200 -2.4774 -1.3960 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000835069278.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:44:24 Heat of formation + Delta-G solvation = 46.405742 kcal Electronic energy + Delta-G solvation = -26783.540340 eV Core-core repulsion = 23160.925675 eV Total energy + Delta-G solvation = -3622.614665 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.61825 -38.40071 -37.28063 -35.57356 -35.24716 -32.65850 -31.05228 -30.30615 -29.59924 -27.87497 -27.60766 -26.41646 -25.21779 -23.78318 -22.14504 -21.58963 -21.30106 -19.53216 -17.90975 -16.77292 -16.60513 -16.40193 -16.24743 -15.65356 -15.38092 -14.96400 -14.62702 -14.34776 -14.18630 -13.75321 -13.68448 -13.56125 -13.02628 -12.96085 -12.80336 -12.69638 -12.27170 -12.06462 -11.96163 -11.93369 -11.68156 -11.61190 -11.38430 -11.25887 -11.16572 -10.99296 -10.74592 -10.60618 -10.58172 -10.16552 -9.80993 -9.77009 -9.63255 -8.72210 -8.44406 -8.42055 -7.99932 -6.36911 -5.93368 -4.08703 2.21616 2.24067 3.07552 3.30317 3.34790 3.37683 3.43249 3.65618 4.01124 4.24553 4.31801 4.49333 4.71560 4.77209 4.87620 4.91752 5.08874 5.12184 5.21225 5.24177 5.29042 5.30030 5.33806 5.43043 5.57727 5.60650 5.62543 5.64289 5.79006 5.88038 6.10293 6.21548 6.38906 6.45887 6.53275 6.71528 6.75991 6.86928 7.05007 7.08967 7.13574 7.28064 7.35443 7.44984 7.70291 7.89808 8.08827 8.24436 8.36489 8.58469 9.00684 9.57727 11.03419 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.012345 B = 0.003792 C = 0.003223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2267.648685 B = 7381.978390 C = 8686.115132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.370 6.370 3 C 0.061 3.939 4 C 0.058 3.942 5 N -0.523 5.523 6 C 0.152 3.848 7 C 0.192 3.808 8 N -0.391 5.391 9 C 0.112 3.888 10 C -0.184 4.184 11 C -0.064 4.064 12 C -0.205 4.205 13 C 0.253 3.747 14 N -0.615 5.615 15 C 0.102 3.898 16 C 0.251 3.749 17 C -0.528 4.528 18 H 0.058 0.942 19 C 0.062 3.938 20 N -0.897 5.897 21 Si 0.895 3.105 22 H -0.277 1.277 23 H -0.286 1.286 24 H -0.275 1.275 25 C -0.191 4.191 26 C -0.045 4.045 27 H 0.036 0.964 28 H 0.038 0.962 29 H 0.085 0.915 30 H 0.052 0.948 31 H 0.050 0.950 32 H 0.091 0.909 33 H 0.053 0.947 34 H 0.107 0.893 35 H 0.071 0.929 36 H 0.081 0.919 37 H 0.038 0.962 38 H 0.099 0.901 39 H 0.108 0.892 40 H 0.040 0.960 41 H 0.051 0.949 42 H 0.060 0.940 43 H 0.029 0.971 44 H 0.035 0.965 45 H 0.264 0.736 46 H 0.129 0.871 47 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.869 20.860 12.790 24.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.289 6.289 3 C -0.017 4.017 4 C -0.070 4.070 5 N -0.248 5.248 6 C 0.022 3.978 7 C -0.126 4.126 8 N -0.068 5.068 9 C -0.015 4.015 10 C -0.188 4.188 11 C -0.084 4.084 12 C -0.228 4.228 13 C 0.146 3.854 14 N -0.320 5.320 15 C -0.042 4.042 16 C 0.131 3.869 17 C -0.567 4.567 18 H 0.077 0.923 19 C -0.140 4.140 20 N -0.537 5.537 21 Si 0.723 3.277 22 H -0.203 1.203 23 H -0.212 1.212 24 H -0.201 1.201 25 C -0.214 4.214 26 C -0.065 4.065 27 H 0.054 0.946 28 H 0.057 0.943 29 H 0.103 0.897 30 H 0.070 0.930 31 H 0.068 0.932 32 H 0.109 0.891 33 H 0.071 0.929 34 H 0.125 0.875 35 H 0.089 0.911 36 H 0.100 0.900 37 H 0.056 0.944 38 H 0.117 0.883 39 H 0.126 0.874 40 H 0.058 0.942 41 H 0.070 0.930 42 H 0.078 0.922 43 H 0.047 0.953 44 H 0.053 0.947 45 H 0.073 0.927 46 H 0.147 0.853 47 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -3.781 19.028 11.119 22.360 hybrid contribution -0.909 0.712 0.056 1.156 sum -4.690 19.740 11.174 23.163 Atomic orbital electron populations 1.22730 0.81627 1.02859 0.99391 1.88063 1.18895 1.26728 1.95168 1.22638 0.93525 0.85641 0.99847 1.22152 0.93636 0.98450 0.92718 1.61909 1.19442 1.42370 1.01105 1.19418 1.03092 0.91600 0.83712 1.28370 0.94663 0.94954 0.94660 1.81383 1.06730 1.05714 1.12984 1.20918 0.85470 0.97374 0.97692 1.19026 1.10473 0.93855 0.95413 1.20464 0.97571 0.97535 0.92783 1.20301 1.11255 0.92073 0.99216 1.17869 0.90291 0.89913 0.87370 1.47077 1.68172 1.07337 1.09459 1.21428 0.98450 0.97142 0.87167 1.19275 0.96727 0.73008 0.97905 1.21560 0.98382 0.92084 1.44657 0.92327 1.24936 0.97381 0.96425 0.95244 1.69918 1.34434 1.01309 1.48003 0.86596 0.84660 0.77199 0.79263 1.20278 1.21187 1.20095 1.20851 1.07139 1.00715 0.92690 1.20571 0.95946 0.92562 0.97410 0.94551 0.94297 0.89652 0.93004 0.93220 0.89103 0.92861 0.87534 0.91106 0.90013 0.94406 0.88328 0.87439 0.94157 0.93002 0.92169 0.95310 0.94704 0.92682 0.85315 0.87140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 11.01 101.05 1.11 1.37 16 2 O -0.37 -4.12 10.65 -35.23 -0.38 -4.49 16 3 C 0.06 0.45 6.02 37.16 0.22 0.68 16 4 C 0.06 0.43 5.34 -3.82 -0.02 0.41 16 5 N -0.52 -5.59 4.50 -239.58 -1.08 -6.66 16 6 C 0.15 1.46 5.27 -6.61 -0.03 1.43 16 7 C 0.19 2.84 11.19 -20.75 -0.23 2.61 16 8 N -0.39 -7.34 15.60 42.16 0.66 -6.68 16 9 C 0.11 1.27 5.11 -4.98 -0.03 1.25 16 10 C -0.18 -2.91 4.08 -104.59 -0.43 -3.33 16 11 C -0.06 -1.04 5.78 -39.61 -0.23 -1.27 16 12 C -0.21 -3.91 7.87 -39.38 -0.31 -4.22 16 13 C 0.25 5.54 6.55 -83.79 -0.55 4.99 16 14 N -0.61 -14.22 2.99 -180.99 -0.54 -14.76 16 15 C 0.10 1.98 10.23 59.85 0.61 2.59 16 16 C 0.25 6.65 4.95 -5.19 -0.03 6.62 16 17 C -0.53 -15.33 9.39 -34.44 -0.32 -15.65 16 18 H 0.06 1.77 7.81 -52.48 -0.41 1.36 16 19 C 0.06 1.79 5.46 -17.82 -0.10 1.70 16 20 N -0.90 -26.70 13.29 55.43 0.74 -25.96 16 21 Si 0.90 22.53 29.54 -169.99 -5.02 17.51 16 22 H -0.28 -6.90 7.11 56.52 0.40 -6.49 16 23 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 24 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 25 C -0.19 -4.19 9.20 -39.38 -0.36 -4.56 16 26 C -0.05 -0.84 9.69 -39.61 -0.38 -1.22 16 27 H 0.04 0.23 8.14 -51.93 -0.42 -0.19 16 28 H 0.04 0.30 8.14 -51.93 -0.42 -0.13 16 29 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.05 0.29 8.14 -51.93 -0.42 -0.14 16 31 H 0.05 0.32 6.12 -51.93 -0.32 0.01 16 32 H 0.09 0.69 7.93 -51.93 -0.41 0.28 16 33 H 0.05 0.26 8.12 -51.93 -0.42 -0.16 16 34 H 0.11 0.79 5.91 -51.93 -0.31 0.48 16 35 H 0.07 0.49 7.99 -51.93 -0.41 0.08 16 36 H 0.08 0.88 7.87 -51.93 -0.41 0.47 16 37 H 0.04 0.36 7.95 -51.93 -0.41 -0.05 16 38 H 0.10 1.37 7.67 -52.49 -0.40 0.97 16 39 H 0.11 1.95 6.14 -52.48 -0.32 1.63 16 40 H 0.04 0.80 8.14 -51.93 -0.42 0.37 16 41 H 0.05 0.87 6.20 -51.93 -0.32 0.54 16 42 H 0.06 1.10 7.89 -51.93 -0.41 0.69 16 43 H 0.03 0.79 7.89 -51.93 -0.41 0.38 16 44 H 0.04 0.97 6.21 -51.93 -0.32 0.65 16 45 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 46 H 0.13 3.12 6.15 -52.49 -0.32 2.79 16 47 H 0.11 1.87 8.06 -52.49 -0.42 1.45 16 LS Contribution 379.97 15.07 5.73 5.73 Total: -1.00 -34.48 379.97 -8.25 -42.74 By element: Atomic # 1 Polarization: 6.49 SS G_CDS: -7.29 Total: -0.80 kcal Atomic # 6 Polarization: -5.54 SS G_CDS: -1.07 Total: -6.62 kcal Atomic # 7 Polarization: -53.84 SS G_CDS: -0.22 Total: -54.06 kcal Atomic # 8 Polarization: -4.12 SS G_CDS: -0.38 Total: -4.49 kcal Atomic # 14 Polarization: 22.53 SS G_CDS: -5.02 Total: 17.51 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -34.48 -8.25 -42.74 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835069278.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.141 kcal (2) G-P(sol) polarization free energy of solvation -34.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.736 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds