Wall clock time and date at job start Tue Mar 31 2020 11:44:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46509 * 1 3 3 C 1.46494 * 119.99838 * 2 1 4 4 C 1.50704 * 109.46760 * 269.99606 * 3 2 1 5 5 H 1.07999 * 120.00321 * 0.02562 * 4 3 2 6 6 C 1.37876 * 119.99587 * 180.02562 * 4 3 2 7 7 N 1.31518 * 119.99921 * 180.02562 * 6 4 3 8 8 Si 1.86798 * 120.00422 * 0.02562 * 6 4 3 9 9 H 1.48493 * 109.47290 * 89.99737 * 8 6 4 10 10 H 1.48504 * 109.47235 * 210.00379 * 8 6 4 11 11 H 1.48510 * 109.46898 * 329.99959 * 8 6 4 12 12 C 1.39591 * 119.99401 * 179.97438 * 2 1 3 13 13 C 1.39051 * 119.92510 * 359.97438 * 12 2 1 14 14 C 1.37781 * 120.08075 * 179.97438 * 13 12 2 15 15 C 1.39727 * 119.91891 * 0.02562 * 14 13 12 16 16 C 1.47468 * 120.07735 * 179.97438 * 15 14 13 17 17 N 1.29755 * 119.99728 * 179.97438 * 16 15 14 18 18 N 1.40104 * 119.99956 * 180.02562 * 17 16 15 19 19 C 1.47424 * 125.64463 * 359.97421 * 18 17 16 20 20 C 1.54907 * 104.82861 * 204.15182 * 19 18 17 21 21 C 1.55157 * 101.58313 * 322.99335 * 20 19 18 22 22 C 1.47020 * 125.64500 * 180.02562 * 18 17 16 23 23 H 1.08992 * 110.01474 * 59.43183 * 22 18 17 24 24 C 1.52999 * 109.88252 * 298.32947 * 22 18 17 25 25 O 1.42905 * 109.46728 * 67.19939 * 24 22 18 26 26 C 1.39732 * 119.84262 * 0.27284 * 15 14 13 27 27 C 1.37786 * 119.91342 * 359.44544 * 26 15 14 28 28 H 1.09005 * 109.46754 * 269.99956 * 1 2 3 29 29 H 1.08996 * 109.47018 * 30.00296 * 1 2 3 30 30 H 1.08996 * 109.46849 * 150.00349 * 1 2 3 31 31 H 1.08994 * 109.47364 * 29.99765 * 3 2 1 32 32 H 1.09000 * 109.46884 * 150.00045 * 3 2 1 33 33 H 0.96993 * 120.00242 * 179.97438 * 7 6 4 34 34 H 1.08000 * 119.95638 * 359.95878 * 13 12 2 35 35 H 1.08006 * 120.03905 * 180.02562 * 14 13 12 36 36 H 1.07995 * 120.00146 * 0.02562 * 16 15 14 37 37 H 1.08996 * 110.36661 * 85.31771 * 19 18 17 38 38 H 1.08998 * 110.37077 * 322.98733 * 19 18 17 39 39 H 1.09002 * 111.00460 * 204.92067 * 20 19 18 40 40 H 1.08998 * 111.00982 * 81.06615 * 20 19 18 41 41 H 1.09000 * 110.72000 * 277.13610 * 21 20 19 42 42 H 1.08997 * 110.72138 * 153.86562 * 21 20 19 43 43 H 1.09000 * 109.47486 * 307.19878 * 24 22 18 44 44 H 1.09001 * 109.47362 * 187.19155 * 24 22 18 45 45 H 0.96696 * 114.00036 * 179.97438 * 25 24 22 46 46 H 1.07995 * 120.04185 * 179.70269 * 26 15 14 47 47 H 1.07997 * 119.95709 * 180.27509 * 27 26 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7036 -1.4209 5 1 2.0975 1.0960 -2.2418 6 6 3.1269 2.8773 -1.6728 7 7 3.3458 3.2572 -2.9128 8 14 3.7351 3.9280 -0.2531 9 1 5.1083 3.5058 0.1225 10 1 3.7508 5.3548 -0.6644 11 1 2.8292 3.7586 0.9115 12 6 2.1629 -1.2090 0.0005 13 6 1.4660 -2.4122 0.0016 14 6 2.1515 -3.6074 0.0016 15 6 3.5488 -3.6093 0.0011 16 6 4.2860 -4.8865 0.0017 17 7 5.5836 -4.8865 0.0006 18 7 6.2841 -6.0998 0.0006 19 6 5.6761 -7.4429 0.0023 20 6 6.7581 -8.3671 0.6143 21 6 8.0580 -7.7558 0.0279 22 6 7.7472 -6.2445 0.0001 23 1 8.1700 -5.7627 0.8816 24 6 8.3317 -5.6165 -1.2667 25 8 8.1410 -4.2007 -1.2281 26 6 4.2458 -2.3983 0.0063 27 6 3.5535 -1.2070 0.0004 28 1 -0.3633 0.0000 1.0277 29 1 -0.3633 0.8899 -0.5139 30 1 -0.3633 -0.8900 -0.5138 31 1 1.6085 2.0283 0.5138 32 1 3.1499 1.1383 0.5138 33 1 3.8225 4.0830 -3.0901 34 1 0.3860 -2.4099 0.0027 35 1 1.6095 -4.5416 0.0020 36 1 3.7460 -5.8217 0.0021 37 1 5.4425 -7.7547 -1.0157 38 1 4.7770 -7.4516 0.6184 39 1 6.6260 -9.3968 0.2818 40 1 6.7541 -8.3061 1.7026 41 1 8.2405 -8.1310 -0.9791 42 1 8.9085 -7.9625 0.6775 43 1 7.8278 -6.0272 -2.1417 44 1 9.3974 -5.8381 -1.3237 45 1 8.4884 -3.7358 -2.0015 46 1 5.3258 -2.3961 0.0108 47 1 4.0916 -0.2706 0.0000 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000841663714.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:44:36 Heat of formation + Delta-G solvation = 41.133677 kcal Electronic energy + Delta-G solvation = -25889.659659 eV Core-core repulsion = 22266.816380 eV Total energy + Delta-G solvation = -3622.843279 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.19282 -38.84508 -36.45596 -36.00378 -34.52944 -32.58111 -30.56225 -30.54086 -30.35070 -28.57932 -27.93869 -25.58716 -24.93127 -23.16628 -22.11340 -21.55655 -21.04672 -19.86691 -18.83256 -17.45056 -17.00927 -16.91496 -16.68049 -16.33349 -15.05272 -14.76607 -14.58622 -14.27483 -14.20549 -13.79777 -13.77029 -13.59038 -13.28548 -12.97061 -12.81297 -12.68926 -12.37902 -12.29835 -12.00223 -11.61109 -11.59766 -11.46659 -11.44150 -11.17470 -11.15992 -11.01365 -10.86529 -10.57383 -10.21593 -10.10454 -10.00508 -9.58987 -9.52478 -9.01070 -8.62985 -8.28957 -7.59751 -6.23402 -6.11594 -4.11829 1.68755 2.15126 2.70063 3.13602 3.25180 3.32332 3.33512 3.97111 4.05902 4.27420 4.35277 4.46357 4.65635 4.67817 4.91979 5.10183 5.13557 5.16938 5.18782 5.26692 5.30956 5.36616 5.39386 5.48211 5.54013 5.56929 5.74011 5.76520 5.79549 5.95160 5.98877 6.05478 6.16192 6.24582 6.40243 6.41392 6.58157 6.77703 6.80885 6.95833 7.07024 7.22477 7.31433 7.53631 7.56358 7.69042 8.05267 8.34432 8.53084 8.70674 8.95766 9.48005 11.01255 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.015733 B = 0.002869 C = 0.002524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1779.277016 B = 9755.867335 C =11091.168496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.097 3.903 2 N -0.608 5.608 3 C 0.219 3.781 4 C -0.534 4.534 5 H 0.077 0.923 6 C 0.073 3.927 7 N -0.895 5.895 8 Si 0.872 3.128 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.265 1.265 12 C 0.249 3.751 13 C -0.221 4.221 14 C -0.051 4.051 15 C -0.126 4.126 16 C 0.072 3.928 17 N -0.191 5.191 18 N -0.550 5.550 19 C 0.088 3.912 20 C -0.127 4.127 21 C -0.125 4.125 22 C 0.179 3.821 23 H 0.072 0.928 24 C 0.069 3.931 25 O -0.551 6.551 26 C -0.036 4.036 27 C -0.193 4.193 28 H 0.037 0.963 29 H 0.069 0.931 30 H 0.059 0.941 31 H 0.028 0.972 32 H 0.029 0.971 33 H 0.265 0.735 34 H 0.117 0.883 35 H 0.113 0.887 36 H 0.099 0.901 37 H 0.052 0.948 38 H 0.064 0.936 39 H 0.081 0.919 40 H 0.075 0.925 41 H 0.077 0.923 42 H 0.085 0.915 43 H 0.041 0.959 44 H 0.045 0.955 45 H 0.374 0.626 46 H 0.125 0.875 47 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.554 -22.373 6.577 23.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.313 5.313 3 C 0.097 3.903 4 C -0.573 4.573 5 H 0.095 0.905 6 C -0.130 4.130 7 N -0.533 5.533 8 Si 0.699 3.301 9 H -0.198 1.198 10 H -0.210 1.210 11 H -0.190 1.190 12 C 0.141 3.859 13 C -0.244 4.244 14 C -0.072 4.072 15 C -0.131 4.131 16 C -0.138 4.138 17 N 0.007 4.993 18 N -0.367 5.367 19 C -0.038 4.038 20 C -0.166 4.166 21 C -0.164 4.164 22 C 0.074 3.926 23 H 0.090 0.910 24 C -0.011 4.011 25 O -0.355 6.355 26 C -0.057 4.057 27 C -0.215 4.215 28 H 0.056 0.944 29 H 0.088 0.912 30 H 0.077 0.923 31 H 0.046 0.954 32 H 0.047 0.953 33 H 0.075 0.925 34 H 0.135 0.865 35 H 0.131 0.869 36 H 0.116 0.884 37 H 0.071 0.929 38 H 0.082 0.918 39 H 0.100 0.900 40 H 0.094 0.906 41 H 0.096 0.904 42 H 0.103 0.897 43 H 0.059 0.941 44 H 0.063 0.937 45 H 0.220 0.780 46 H 0.143 0.857 47 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 6.117 -21.647 7.043 23.572 hybrid contribution -0.043 0.129 -0.183 0.228 sum 6.075 -21.518 6.860 23.388 Atomic orbital electron populations 1.21523 0.80942 1.02429 0.99796 1.46762 1.04522 1.04050 1.75932 1.19692 0.92023 0.80642 0.97893 1.21467 1.36950 1.07277 0.91576 0.90522 1.24895 0.95380 0.97255 0.95469 1.69900 1.41250 1.23490 1.18663 0.86917 0.80045 0.80132 0.83054 1.19808 1.20999 1.19008 1.18050 0.91501 0.85853 0.90529 1.20431 0.99100 0.91056 1.13816 1.20678 0.92492 0.96850 0.97189 1.17878 0.92074 0.90384 1.12802 1.23932 0.90607 0.96727 1.02536 1.74677 1.08935 1.04668 1.11053 1.50676 1.03544 0.98539 1.83896 1.22335 0.97128 0.84688 0.99662 1.22676 0.94337 0.98718 1.00896 1.22624 0.98479 0.93106 1.02204 1.21137 0.79766 0.94457 0.97247 0.91014 1.22594 0.97742 0.82894 0.97839 1.86675 1.84132 1.17910 1.46773 1.21040 0.99636 0.90753 0.94222 1.20807 0.92424 0.98856 1.09409 0.94419 0.91210 0.92258 0.95369 0.95319 0.92518 0.86464 0.86939 0.88393 0.92948 0.91788 0.90012 0.90584 0.90409 0.89683 0.94067 0.93705 0.78045 0.85733 0.85219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.64 10.18 59.85 0.61 2.25 16 2 N -0.61 -12.73 2.99 -180.93 -0.54 -13.27 16 3 C 0.22 5.18 3.97 -5.20 -0.02 5.15 16 4 C -0.53 -14.92 9.94 -34.44 -0.34 -15.26 16 5 H 0.08 2.40 8.06 -52.49 -0.42 1.97 16 6 C 0.07 2.07 5.47 -17.82 -0.10 1.97 16 7 N -0.89 -27.18 13.96 55.43 0.77 -26.40 16 8 Si 0.87 20.91 27.47 -169.99 -4.67 16.24 16 9 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 10 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 11 H -0.27 -6.05 6.54 56.52 0.37 -5.68 16 12 C 0.25 5.01 6.56 -83.72 -0.55 4.46 16 13 C -0.22 -3.78 9.19 -39.45 -0.36 -4.15 16 14 C -0.05 -0.79 9.78 -39.19 -0.38 -1.18 16 15 C -0.13 -2.15 5.87 -105.02 -0.62 -2.77 16 16 C 0.07 1.11 10.38 -14.67 -0.15 0.96 16 17 N -0.19 -3.12 10.18 32.16 0.33 -2.79 16 18 N -0.55 -7.28 4.10 -104.43 -0.43 -7.71 16 19 C 0.09 0.87 6.51 -2.53 -0.02 0.85 16 20 C -0.13 -0.88 7.08 -24.58 -0.17 -1.05 16 21 C -0.13 -0.86 6.48 -24.90 -0.16 -1.02 16 22 C 0.18 1.94 3.65 -66.95 -0.24 1.70 16 23 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 24 C 0.07 0.73 6.54 37.16 0.24 0.97 16 25 O -0.55 -7.36 13.02 -35.23 -0.46 -7.82 16 26 C -0.04 -0.67 9.57 -39.19 -0.37 -1.05 16 27 C -0.19 -3.99 9.19 -39.44 -0.36 -4.35 16 28 H 0.04 0.56 8.14 -51.93 -0.42 0.13 16 29 H 0.07 1.22 8.07 -51.93 -0.42 0.80 16 30 H 0.06 0.89 6.18 -51.93 -0.32 0.57 16 31 H 0.03 0.66 7.13 -51.93 -0.37 0.29 16 32 H 0.03 0.68 5.61 -51.93 -0.29 0.39 16 33 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 34 H 0.12 1.76 6.12 -52.49 -0.32 1.44 16 35 H 0.11 1.40 8.06 -52.48 -0.42 0.98 16 36 H 0.10 1.28 6.58 -52.49 -0.35 0.94 16 37 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.06 0.62 7.18 -51.93 -0.37 0.25 16 39 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 40 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.08 0.46 7.85 -51.93 -0.41 0.05 16 42 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 44 H 0.04 0.36 8.14 -51.93 -0.42 -0.07 16 45 H 0.37 3.51 9.12 45.56 0.42 3.93 16 46 H 0.12 2.37 7.55 -52.49 -0.40 1.97 16 47 H 0.13 2.87 6.12 -52.49 -0.32 2.55 16 LS Contribution 379.89 15.07 5.72 5.72 Total: -1.00 -33.81 379.89 -8.82 -42.63 By element: Atomic # 1 Polarization: 12.45 SS G_CDS: -6.55 Total: 5.91 kcal Atomic # 6 Polarization: -9.50 SS G_CDS: -3.01 Total: -12.51 kcal Atomic # 7 Polarization: -50.31 SS G_CDS: 0.13 Total: -50.18 kcal Atomic # 8 Polarization: -7.36 SS G_CDS: -0.46 Total: -7.82 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -4.67 Total: 16.24 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -33.81 -8.82 -42.63 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000841663714.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.760 kcal (2) G-P(sol) polarization free energy of solvation -33.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.626 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds