Wall clock time and date at job start Tue Mar 31 2020 11:44:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46509 * 1 3 3 C 1.46494 * 119.99838 * 2 1 4 4 C 1.50704 * 109.46760 * 269.99606 * 3 2 1 5 5 H 1.07999 * 120.00321 * 0.02562 * 4 3 2 6 6 C 1.37876 * 119.99587 * 180.02562 * 4 3 2 7 7 N 1.31518 * 119.99921 * 180.02562 * 6 4 3 8 8 Si 1.86798 * 120.00422 * 0.02562 * 6 4 3 9 9 H 1.48493 * 109.47290 * 89.99737 * 8 6 4 10 10 H 1.48504 * 109.47235 * 210.00379 * 8 6 4 11 11 H 1.48510 * 109.46898 * 329.99959 * 8 6 4 12 12 C 1.39591 * 119.99401 * 179.97438 * 2 1 3 13 13 C 1.39051 * 119.92510 * 359.97438 * 12 2 1 14 14 C 1.37781 * 120.08075 * 179.97438 * 13 12 2 15 15 C 1.39727 * 119.91891 * 0.02562 * 14 13 12 16 16 C 1.47468 * 120.07735 * 179.97438 * 15 14 13 17 17 N 1.29755 * 119.99728 * 179.97438 * 16 15 14 18 18 N 1.40104 * 119.99956 * 180.02562 * 17 16 15 19 19 C 1.47424 * 125.64463 * 359.97421 * 18 17 16 20 20 C 1.54907 * 104.82861 * 204.15182 * 19 18 17 21 21 C 1.55157 * 101.58313 * 322.99335 * 20 19 18 22 22 C 1.47020 * 125.64500 * 180.02562 * 18 17 16 23 23 H 1.08992 * 110.01474 * 59.43183 * 22 18 17 24 24 C 1.52999 * 109.88252 * 298.32947 * 22 18 17 25 25 O 1.42905 * 109.46728 * 67.19939 * 24 22 18 26 26 C 1.39732 * 119.84262 * 0.27284 * 15 14 13 27 27 C 1.37786 * 119.91342 * 359.44544 * 26 15 14 28 28 H 1.09005 * 109.46754 * 269.99956 * 1 2 3 29 29 H 1.08996 * 109.47018 * 30.00296 * 1 2 3 30 30 H 1.08996 * 109.46849 * 150.00349 * 1 2 3 31 31 H 1.08994 * 109.47364 * 29.99765 * 3 2 1 32 32 H 1.09000 * 109.46884 * 150.00045 * 3 2 1 33 33 H 0.96993 * 120.00242 * 179.97438 * 7 6 4 34 34 H 1.08000 * 119.95638 * 359.95878 * 13 12 2 35 35 H 1.08006 * 120.03905 * 180.02562 * 14 13 12 36 36 H 1.07995 * 120.00146 * 0.02562 * 16 15 14 37 37 H 1.08996 * 110.36661 * 85.31771 * 19 18 17 38 38 H 1.08998 * 110.37077 * 322.98733 * 19 18 17 39 39 H 1.09002 * 111.00460 * 204.92067 * 20 19 18 40 40 H 1.08998 * 111.00982 * 81.06615 * 20 19 18 41 41 H 1.09000 * 110.72000 * 277.13610 * 21 20 19 42 42 H 1.08997 * 110.72138 * 153.86562 * 21 20 19 43 43 H 1.09000 * 109.47486 * 307.19878 * 24 22 18 44 44 H 1.09001 * 109.47362 * 187.19155 * 24 22 18 45 45 H 0.96696 * 114.00036 * 179.97438 * 25 24 22 46 46 H 1.07995 * 120.04185 * 179.70269 * 26 15 14 47 47 H 1.07997 * 119.95709 * 180.27509 * 27 26 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7036 -1.4209 5 1 2.0975 1.0960 -2.2418 6 6 3.1269 2.8773 -1.6728 7 7 3.3458 3.2572 -2.9128 8 14 3.7351 3.9280 -0.2531 9 1 5.1083 3.5058 0.1225 10 1 3.7508 5.3548 -0.6644 11 1 2.8292 3.7586 0.9115 12 6 2.1629 -1.2090 0.0005 13 6 1.4660 -2.4122 0.0016 14 6 2.1515 -3.6074 0.0016 15 6 3.5488 -3.6093 0.0011 16 6 4.2860 -4.8865 0.0017 17 7 5.5836 -4.8865 0.0006 18 7 6.2841 -6.0998 0.0006 19 6 5.6761 -7.4429 0.0023 20 6 6.7581 -8.3671 0.6143 21 6 8.0580 -7.7558 0.0279 22 6 7.7472 -6.2445 0.0001 23 1 8.1700 -5.7627 0.8816 24 6 8.3317 -5.6165 -1.2667 25 8 8.1410 -4.2007 -1.2281 26 6 4.2458 -2.3983 0.0063 27 6 3.5535 -1.2070 0.0004 28 1 -0.3633 0.0000 1.0277 29 1 -0.3633 0.8899 -0.5139 30 1 -0.3633 -0.8900 -0.5138 31 1 1.6085 2.0283 0.5138 32 1 3.1499 1.1383 0.5138 33 1 3.8225 4.0830 -3.0901 34 1 0.3860 -2.4099 0.0027 35 1 1.6095 -4.5416 0.0020 36 1 3.7460 -5.8217 0.0021 37 1 5.4425 -7.7547 -1.0157 38 1 4.7770 -7.4516 0.6184 39 1 6.6260 -9.3968 0.2818 40 1 6.7541 -8.3061 1.7026 41 1 8.2405 -8.1310 -0.9791 42 1 8.9085 -7.9625 0.6775 43 1 7.8278 -6.0272 -2.1417 44 1 9.3974 -5.8381 -1.3237 45 1 8.4884 -3.7358 -2.0015 46 1 5.3258 -2.3961 0.0108 47 1 4.0916 -0.2706 0.0000 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000841663714.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:44:35 Heat of formation + Delta-G solvation = 17.741136 kcal Electronic energy + Delta-G solvation = -25890.674036 eV Core-core repulsion = 22266.816380 eV Total energy + Delta-G solvation = -3623.857656 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.41613 -39.89238 -37.69715 -37.14561 -35.73871 -34.65052 -32.02700 -31.71780 -31.20327 -30.23260 -29.16705 -26.92082 -25.97973 -24.68534 -23.36815 -22.85958 -21.99772 -21.15985 -19.96696 -19.07671 -18.41704 -18.13359 -17.96507 -17.20352 -16.73551 -16.06176 -16.03503 -15.42916 -15.28110 -15.11202 -14.95347 -14.76368 -14.52089 -14.36736 -14.18960 -13.93197 -13.71295 -13.39706 -13.35197 -13.10547 -12.96326 -12.67003 -12.45537 -12.43133 -12.29710 -12.18009 -12.04535 -11.96379 -11.74143 -11.64386 -11.51112 -10.92550 -10.82249 -10.65570 -10.49941 -9.71082 -8.75841 -8.32982 -7.66085 -6.38153 0.35817 0.72321 1.34176 1.35732 1.45522 1.76197 1.85468 2.30771 2.53629 3.00987 3.22950 3.26132 3.64775 3.77817 3.94405 4.06257 4.11833 4.20373 4.23322 4.31574 4.41252 4.42052 4.52945 4.54458 4.61992 4.64577 4.72594 4.75314 4.80962 4.81250 4.90413 4.92678 4.97435 5.02659 5.04342 5.08758 5.19579 5.31781 5.35459 5.46133 5.58214 5.69208 5.89401 6.06497 6.17262 6.17901 6.59370 6.69714 6.85372 6.90607 7.27039 7.63411 8.84344 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.015733 B = 0.002869 C = 0.002524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1779.277016 B = 9755.867335 C =11091.168496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.624 5.624 3 C 0.229 3.771 4 C -0.535 4.535 5 H 0.026 0.974 6 C 0.012 3.988 7 N -0.946 5.946 8 Si 0.945 3.055 9 H -0.269 1.269 10 H -0.279 1.279 11 H -0.241 1.241 12 C 0.222 3.778 13 C -0.212 4.212 14 C -0.040 4.040 15 C -0.121 4.121 16 C 0.061 3.939 17 N -0.221 5.221 18 N -0.557 5.557 19 C 0.080 3.920 20 C -0.118 4.118 21 C -0.114 4.114 22 C 0.165 3.835 23 H 0.052 0.948 24 C 0.066 3.934 25 O -0.584 6.584 26 C -0.048 4.048 27 C -0.219 4.219 28 H 0.065 0.935 29 H 0.056 0.944 30 H 0.078 0.922 31 H 0.039 0.961 32 H 0.027 0.973 33 H 0.268 0.732 34 H 0.146 0.854 35 H 0.157 0.843 36 H 0.126 0.874 37 H 0.057 0.943 38 H 0.065 0.935 39 H 0.110 0.890 40 H 0.075 0.925 41 H 0.093 0.907 42 H 0.106 0.894 43 H 0.038 0.962 44 H 0.074 0.926 45 H 0.385 0.615 46 H 0.112 0.888 47 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.247 -25.481 8.335 27.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.331 5.331 3 C 0.106 3.894 4 C -0.574 4.574 5 H 0.044 0.956 6 C -0.186 4.186 7 N -0.586 5.586 8 Si 0.767 3.233 9 H -0.194 1.194 10 H -0.204 1.204 11 H -0.164 1.164 12 C 0.116 3.884 13 C -0.235 4.235 14 C -0.061 4.061 15 C -0.126 4.126 16 C -0.149 4.149 17 N -0.025 5.025 18 N -0.373 5.373 19 C -0.045 4.045 20 C -0.157 4.157 21 C -0.152 4.152 22 C 0.060 3.940 23 H 0.070 0.930 24 C -0.013 4.013 25 O -0.391 6.391 26 C -0.069 4.069 27 C -0.241 4.241 28 H 0.083 0.917 29 H 0.075 0.925 30 H 0.097 0.903 31 H 0.057 0.943 32 H 0.045 0.955 33 H 0.077 0.923 34 H 0.163 0.837 35 H 0.175 0.825 36 H 0.143 0.857 37 H 0.075 0.925 38 H 0.083 0.917 39 H 0.128 0.872 40 H 0.094 0.906 41 H 0.111 0.889 42 H 0.124 0.876 43 H 0.057 0.943 44 H 0.092 0.908 45 H 0.233 0.767 46 H 0.130 0.870 47 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 5.796 -24.808 8.807 26.955 hybrid contribution 0.154 0.877 -0.820 1.210 sum 5.950 -23.931 7.987 25.920 Atomic orbital electron populations 1.21703 0.78713 1.02808 1.01595 1.46740 1.05892 1.03214 1.77255 1.19370 0.92658 0.82522 0.94818 1.21663 1.36386 1.06652 0.92665 0.95557 1.25860 0.95501 0.98829 0.98437 1.70063 1.42784 1.24435 1.21365 0.85756 0.79791 0.77852 0.79861 1.19405 1.20422 1.16433 1.18300 0.91320 0.86790 0.92036 1.20767 1.00475 0.90132 1.12097 1.21112 0.91872 0.98145 0.95001 1.18171 0.93110 0.90317 1.10982 1.23892 0.90575 0.96752 1.03645 1.74512 1.09839 1.07822 1.10306 1.50942 1.04600 0.98742 1.83052 1.22575 0.98183 0.83457 1.00310 1.22687 0.92881 0.99366 1.00736 1.22650 0.99213 0.89658 1.03711 1.21483 0.78653 0.97314 0.96518 0.93006 1.22753 0.99498 0.81440 0.97596 1.86639 1.84716 1.19776 1.47957 1.20972 0.99154 0.91389 0.95366 1.20694 0.93307 0.98302 1.11833 0.91700 0.92479 0.90307 0.94300 0.95482 0.92334 0.83687 0.82496 0.85724 0.92463 0.91669 0.87213 0.90629 0.88861 0.87578 0.94322 0.90812 0.76669 0.87026 0.88149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 3.09 10.18 127.77 1.30 4.39 16 2 N -0.62 -26.35 2.99 -726.35 -2.17 -28.52 16 3 C 0.23 11.07 3.97 85.64 0.34 11.41 16 4 C -0.53 -31.32 9.94 25.60 0.25 -31.07 16 5 H 0.03 1.75 8.06 -2.91 -0.02 1.73 16 6 C 0.01 0.69 5.47 84.65 0.46 1.15 16 7 N -0.95 -60.01 13.96 21.45 0.30 -59.71 16 8 Si 0.94 44.02 27.47 68.60 1.88 45.90 16 9 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 10 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 11 H -0.24 -10.21 6.54 99.48 0.65 -9.56 16 12 C 0.22 9.02 6.56 38.30 0.25 9.27 16 13 C -0.21 -6.85 9.19 22.36 0.21 -6.64 16 14 C -0.04 -1.16 9.78 22.52 0.22 -0.94 16 15 C -0.12 -4.04 5.87 -20.12 -0.12 -4.16 16 16 C 0.06 1.82 10.38 87.43 0.91 2.72 16 17 N -0.22 -7.19 10.18 -52.18 -0.53 -7.73 16 18 N -0.56 -14.11 4.10 -484.30 -1.98 -16.10 16 19 C 0.08 1.37 6.51 86.85 0.57 1.94 16 20 C -0.12 -1.22 7.08 31.99 0.23 -1.00 16 21 C -0.11 -1.20 6.48 31.78 0.21 -0.99 16 22 C 0.16 3.38 3.65 45.34 0.17 3.55 16 23 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 24 C 0.07 1.34 6.54 71.98 0.47 1.81 16 25 O -0.58 -16.02 13.02 -148.98 -1.94 -17.96 16 26 C -0.05 -1.89 9.57 22.52 0.22 -1.68 16 27 C -0.22 -9.54 9.19 22.36 0.21 -9.34 16 28 H 0.06 1.76 8.14 -2.38 -0.02 1.74 16 29 H 0.06 1.98 8.07 -2.39 -0.02 1.96 16 30 H 0.08 2.22 6.18 -2.39 -0.01 2.20 16 31 H 0.04 1.79 7.13 -2.39 -0.02 1.77 16 32 H 0.03 1.32 5.61 -2.39 -0.01 1.31 16 33 H 0.27 15.78 8.31 -92.71 -0.77 15.01 16 34 H 0.15 3.82 6.12 -2.91 -0.02 3.81 16 35 H 0.16 3.13 8.06 -2.91 -0.02 3.10 16 36 H 0.13 2.93 6.58 -2.91 -0.02 2.91 16 37 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 38 H 0.06 1.10 7.18 -2.39 -0.02 1.09 16 39 H 0.11 0.59 8.14 -2.39 -0.02 0.57 16 40 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 41 H 0.09 0.74 7.85 -2.39 -0.02 0.72 16 42 H 0.11 0.71 8.14 -2.39 -0.02 0.70 16 43 H 0.04 0.79 8.14 -2.39 -0.02 0.77 16 44 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 45 H 0.39 7.62 9.12 -74.06 -0.68 6.95 16 46 H 0.11 4.58 7.55 -2.91 -0.02 4.56 16 47 H 0.10 4.84 6.12 -2.91 -0.02 4.82 16 Total: -1.00 -78.77 379.89 1.68 -77.10 By element: Atomic # 1 Polarization: 26.35 SS G_CDS: 0.24 Total: 26.59 kcal Atomic # 6 Polarization: -25.45 SS G_CDS: 5.88 Total: -19.57 kcal Atomic # 7 Polarization: -107.66 SS G_CDS: -4.39 Total: -112.05 kcal Atomic # 8 Polarization: -16.02 SS G_CDS: -1.94 Total: -17.96 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 1.88 Total: 45.90 kcal Total: -78.77 1.68 -77.10 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000841663714.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.840 kcal (2) G-P(sol) polarization free energy of solvation -78.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.098 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds