Wall clock time and date at job start Tue Mar 31 2020 11:22:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46901 * 110.99996 * 2 1 4 4 C 1.52789 * 109.42362 * 187.11598 * 3 2 1 5 5 N 1.47084 * 108.76178 * 306.42425 * 4 3 2 6 6 C 1.34778 * 120.87765 * 231.11965 * 5 4 3 7 7 O 1.21584 * 120.00109 * 185.09660 * 6 5 4 8 8 N 1.34783 * 120.00149 * 5.09870 * 6 5 4 9 9 C 1.46493 * 119.99999 * 174.90819 * 8 6 5 10 10 C 1.50698 * 109.47154 * 180.02562 * 9 8 6 11 11 H 1.08000 * 120.00180 * 359.97438 * 10 9 8 12 12 C 1.37881 * 120.00114 * 180.27658 * 10 9 8 13 13 N 1.31512 * 119.99920 * 359.71872 * 12 10 9 14 14 Si 1.86798 * 120.00063 * 179.72361 * 12 10 9 15 15 H 1.48502 * 109.47143 * 359.97438 * 14 12 10 16 16 H 1.48496 * 109.47417 * 119.99647 * 14 12 10 17 17 H 1.48498 * 109.46980 * 239.99721 * 14 12 10 18 18 C 1.47077 * 118.23925 * 50.85406 * 5 4 3 19 19 H 1.08997 * 109.62955 * 68.98931 * 18 5 4 20 20 C 1.52998 * 109.62806 * 189.37749 * 18 5 4 21 21 C 1.50704 * 109.47294 * 177.75425 * 20 18 5 22 22 C 1.38231 * 119.99715 * 264.52612 * 21 20 18 23 23 C 1.38241 * 119.99476 * 179.76289 * 22 21 20 24 24 C 1.38234 * 119.99976 * 0.49018 * 23 22 21 25 25 C 1.38233 * 119.99849 * 359.78407 * 24 23 22 26 26 C 1.38232 * 120.00524 * 359.96284 * 25 24 23 27 27 C 1.46897 * 111.00129 * 124.30133 * 2 1 3 28 28 H 1.09003 * 109.46683 * 295.69927 * 1 2 3 29 29 H 1.08995 * 109.47122 * 55.69599 * 1 2 3 30 30 H 1.09002 * 109.46866 * 175.70329 * 1 2 3 31 31 H 1.09002 * 109.49026 * 307.21311 * 3 2 1 32 32 H 1.08997 * 109.49678 * 67.26687 * 3 2 1 33 33 H 1.08996 * 109.55876 * 186.60834 * 4 3 2 34 34 H 1.09004 * 109.45789 * 66.17456 * 4 3 2 35 35 H 0.96998 * 119.99514 * 354.89887 * 8 6 5 36 36 H 1.08999 * 109.47683 * 59.99752 * 9 8 6 37 37 H 1.09007 * 109.47285 * 299.99597 * 9 8 6 38 38 H 0.96999 * 119.99869 * 180.02562 * 13 12 10 39 39 H 1.08998 * 109.47266 * 297.75459 * 20 18 5 40 40 H 1.09002 * 109.47278 * 57.75247 * 20 18 5 41 41 H 1.07999 * 120.00570 * 0.02562 * 22 21 20 42 42 H 1.07998 * 119.99728 * 180.25589 * 23 22 21 43 43 H 1.08002 * 119.99782 * 179.76916 * 24 23 22 44 44 H 1.08003 * 119.99762 * 179.97438 * 25 24 23 45 45 H 1.07992 * 120.00284 * 179.97438 * 26 25 24 46 46 H 1.08996 * 109.49736 * 52.78841 * 27 2 1 47 47 H 1.09008 * 109.51571 * 292.71666 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 3.5124 1.3334 -0.1785 5 7 4.0869 0.4460 0.8441 6 6 5.1056 0.8583 1.6244 7 8 5.6297 0.0826 2.4002 8 7 5.5434 2.1306 1.5447 9 6 6.5738 2.6099 2.4691 10 6 6.8826 4.0546 2.1719 11 1 6.3635 4.5647 1.3740 12 6 7.8322 4.7236 2.9147 13 7 8.4647 4.1024 3.8862 14 14 8.2205 6.5122 2.5413 15 1 7.3783 6.9757 1.4094 16 1 7.9381 7.3410 3.7406 17 1 9.6541 6.6418 2.1764 18 6 3.5164 -0.9010 0.9967 19 1 3.7591 -1.5028 0.1210 20 6 4.0907 -1.5633 2.2507 21 6 3.4628 -2.9210 2.4341 22 6 2.3705 -3.0703 3.2679 23 6 1.7916 -4.3149 3.4323 24 6 2.3112 -5.4117 2.7707 25 6 3.4071 -5.2633 1.9413 26 6 3.9828 -4.0179 1.7728 27 6 1.9954 -0.7728 1.1329 28 1 -0.3633 0.4457 0.9261 29 1 -0.3633 0.5791 -0.8489 30 1 -0.3633 -1.0248 -0.0770 31 1 1.5456 1.9337 -0.8183 32 1 1.7551 1.8534 0.9476 33 1 3.9188 2.3380 -0.0618 34 1 3.7517 0.9514 -1.1710 35 1 5.1762 2.7287 0.8752 36 1 7.4774 2.0124 2.3477 37 1 6.2133 2.5192 3.4939 38 1 9.1325 4.5732 4.4089 39 1 5.1696 -1.6737 2.1416 40 1 3.8751 -0.9428 3.1205 41 1 1.9667 -2.2140 3.7877 42 1 0.9356 -4.4308 4.0805 43 1 1.8612 -6.3847 2.9021 44 1 3.8134 -6.1204 1.4248 45 1 4.8392 -3.9021 1.1252 46 1 1.5457 -1.7657 1.1363 47 1 1.7555 -0.2616 2.0653 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000845156472.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:22:08 Heat of formation + Delta-G solvation = 1.829780 kcal Electronic energy + Delta-G solvation = -27078.507937 eV Core-core repulsion = 23453.960313 eV Total energy + Delta-G solvation = -3624.547624 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.80395 -40.07861 -39.08475 -36.50816 -35.62811 -35.02351 -33.85380 -31.76043 -31.36386 -29.99990 -28.66715 -27.57250 -25.27898 -24.89360 -23.66150 -23.41910 -22.26003 -21.82229 -20.70868 -19.22738 -18.06179 -17.63013 -17.35332 -16.81024 -16.56663 -16.38867 -16.08151 -15.90108 -15.77965 -15.68890 -15.23226 -14.95853 -14.66398 -14.22523 -14.13057 -13.99944 -13.81189 -13.73360 -13.38291 -13.16992 -13.01555 -12.83790 -12.75170 -12.54172 -12.46836 -12.26586 -12.15014 -12.13021 -11.83073 -11.78150 -11.43095 -10.80830 -10.43439 -9.99966 -9.78326 -9.58464 -9.50108 -9.25075 -8.28557 -6.44841 0.47765 0.53314 1.42784 1.44426 1.57254 1.70790 2.21880 2.37928 2.83019 2.94603 3.06517 3.15517 3.77293 3.81941 3.97250 4.00499 4.04787 4.16288 4.20355 4.25218 4.31743 4.36842 4.47902 4.57530 4.63519 4.67883 4.70772 4.74677 4.75459 4.92583 5.02616 5.04855 5.06396 5.09661 5.22845 5.28019 5.29142 5.46467 5.60445 5.65067 5.65806 5.72775 5.80746 5.86027 5.94395 5.97880 6.14265 6.18608 6.67093 7.18313 7.25449 7.72697 8.83931 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.015640 B = 0.003275 C = 0.002838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1789.880543 B = 8547.654483 C = 9863.403182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.546 5.546 3 C 0.044 3.956 4 C 0.110 3.890 5 N -0.631 5.631 6 C 0.693 3.307 7 O -0.628 6.628 8 N -0.726 5.726 9 C 0.288 3.712 10 C -0.553 4.553 11 H 0.082 0.918 12 C 0.004 3.996 13 N -0.930 5.930 14 Si 0.985 3.015 15 H -0.252 1.252 16 H -0.279 1.279 17 H -0.279 1.279 18 C 0.181 3.819 19 H 0.080 0.920 20 C -0.062 4.062 21 C -0.091 4.091 22 C -0.129 4.129 23 C -0.121 4.121 24 C -0.129 4.129 25 C -0.120 4.120 26 C -0.129 4.129 27 C 0.060 3.940 28 H 0.022 0.978 29 H 0.086 0.914 30 H 0.076 0.924 31 H 0.117 0.883 32 H 0.026 0.974 33 H 0.089 0.911 34 H 0.090 0.910 35 H 0.400 0.600 36 H -0.015 1.015 37 H -0.017 1.017 38 H 0.268 0.732 39 H 0.080 0.920 40 H 0.046 0.954 41 H 0.115 0.885 42 H 0.142 0.858 43 H 0.146 0.854 44 H 0.142 0.858 45 H 0.119 0.881 46 H 0.096 0.904 47 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.215 -13.114 -9.615 25.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.271 5.271 3 C -0.085 4.085 4 C -0.012 4.012 5 N -0.369 5.369 6 C 0.394 3.606 7 O -0.511 6.511 8 N -0.382 5.382 9 C 0.165 3.835 10 C -0.591 4.591 11 H 0.100 0.900 12 C -0.195 4.195 13 N -0.569 5.569 14 Si 0.808 3.192 15 H -0.176 1.176 16 H -0.205 1.205 17 H -0.205 1.205 18 C 0.077 3.923 19 H 0.098 0.902 20 C -0.100 4.100 21 C -0.092 4.092 22 C -0.147 4.147 23 C -0.139 4.139 24 C -0.146 4.146 25 C -0.138 4.138 26 C -0.147 4.147 27 C -0.069 4.069 28 H 0.041 0.959 29 H 0.105 0.895 30 H 0.095 0.905 31 H 0.135 0.865 32 H 0.045 0.955 33 H 0.107 0.893 34 H 0.108 0.892 35 H 0.237 0.763 36 H 0.003 0.997 37 H 0.001 0.999 38 H 0.077 0.923 39 H 0.098 0.902 40 H 0.064 0.936 41 H 0.133 0.867 42 H 0.159 0.841 43 H 0.164 0.836 44 H 0.160 0.840 45 H 0.137 0.863 46 H 0.114 0.886 47 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges -18.557 -13.832 -9.351 24.963 hybrid contribution 0.399 1.559 0.953 1.871 sum -18.158 -12.273 -8.398 23.471 Atomic orbital electron populations 1.22426 0.85363 1.03197 1.01131 1.61962 1.09286 1.13354 1.42470 1.22450 0.94341 0.89808 1.01851 1.21866 0.93372 0.94241 0.91749 1.47459 1.34922 1.16311 1.38203 1.16295 0.80574 0.82632 0.81056 1.90847 1.62028 1.53651 1.44533 1.45579 1.43515 1.10422 1.38659 1.18369 0.84490 0.93705 0.86927 1.21607 1.23029 0.95741 1.18716 0.90022 1.26053 0.95117 1.04116 0.94248 1.70149 1.26038 1.39275 1.21421 0.85111 0.78192 0.77316 0.78593 1.17586 1.20450 1.20456 1.21077 0.92050 0.81365 0.97802 0.90244 1.20895 1.00620 0.91934 0.96542 1.20126 0.96127 0.95293 0.97645 1.21175 0.96229 0.98343 0.98992 1.21408 1.00418 0.92228 0.99802 1.21465 0.96595 0.99626 0.96942 1.21421 0.96415 0.97121 0.98820 1.21196 1.00422 0.92928 1.00178 1.22447 0.93704 0.99268 0.91463 0.95910 0.89484 0.90485 0.86499 0.95538 0.89339 0.89216 0.76294 0.99689 0.99858 0.92270 0.90185 0.93561 0.86660 0.84055 0.83581 0.84005 0.86287 0.88565 0.95905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 9.58 127.69 1.22 1.62 16 2 N -0.55 -11.11 4.88 -922.39 -4.51 -15.61 16 3 C 0.04 0.88 5.60 86.23 0.48 1.37 16 4 C 0.11 2.65 6.57 86.20 0.57 3.21 16 5 N -0.63 -20.54 3.02 -812.81 -2.45 -22.99 16 6 C 0.69 29.99 8.13 179.05 1.46 31.44 16 7 O -0.63 -32.01 12.05 -3.98 -0.05 -32.06 16 8 N -0.73 -32.46 5.46 -482.30 -2.63 -35.09 16 9 C 0.29 16.25 5.43 85.63 0.47 16.71 16 10 C -0.55 -30.48 9.28 25.60 0.24 -30.25 16 11 H 0.08 4.08 7.60 -2.91 -0.02 4.06 16 12 C 0.00 0.24 5.46 84.66 0.46 0.70 16 13 N -0.93 -56.64 13.29 21.45 0.28 -56.36 16 14 Si 0.98 42.57 29.54 68.60 2.03 44.59 16 15 H -0.25 -10.04 7.11 99.48 0.71 -9.33 16 16 H -0.28 -11.83 7.11 99.48 0.71 -11.13 16 17 H -0.28 -11.86 7.11 99.48 0.71 -11.15 16 18 C 0.18 5.27 3.19 44.96 0.14 5.42 16 19 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 20 C -0.06 -2.07 3.35 29.85 0.10 -1.97 16 21 C -0.09 -2.48 4.36 -19.87 -0.09 -2.57 16 22 C -0.13 -3.08 8.51 22.27 0.19 -2.89 16 23 C -0.12 -2.29 10.05 22.27 0.22 -2.06 16 24 C -0.13 -2.22 10.05 22.27 0.22 -2.00 16 25 C -0.12 -2.31 10.05 22.27 0.22 -2.09 16 26 C -0.13 -3.14 9.72 22.27 0.22 -2.93 16 27 C 0.06 1.44 4.17 86.39 0.36 1.80 16 28 H 0.02 0.36 8.14 -2.39 -0.02 0.34 16 29 H 0.09 1.01 8.08 -2.39 -0.02 0.99 16 30 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 31 H 0.12 1.66 8.06 -2.39 -0.02 1.64 16 32 H 0.03 0.61 8.14 -2.39 -0.02 0.59 16 33 H 0.09 2.07 5.63 -2.39 -0.01 2.05 16 34 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 35 H 0.40 15.05 5.82 -92.71 -0.54 14.51 16 36 H -0.01 -0.94 8.14 -2.39 -0.02 -0.96 16 37 H -0.02 -1.05 8.14 -2.38 -0.02 -1.06 16 38 H 0.27 15.20 8.31 -92.71 -0.77 14.43 16 39 H 0.08 3.25 6.11 -2.39 -0.01 3.23 16 40 H 0.05 1.80 7.29 -2.39 -0.02 1.79 16 41 H 0.12 2.70 8.06 -2.91 -0.02 2.68 16 42 H 0.14 1.95 8.06 -2.91 -0.02 1.92 16 43 H 0.15 1.66 8.06 -2.91 -0.02 1.64 16 44 H 0.14 2.01 8.06 -2.91 -0.02 1.98 16 45 H 0.12 2.83 8.06 -2.91 -0.02 2.81 16 46 H 0.10 2.12 6.86 -2.39 -0.02 2.10 16 47 H 0.02 0.62 8.14 -2.38 -0.02 0.60 16 Total: -1.00 -72.73 372.23 -0.43 -73.15 By element: Atomic # 1 Polarization: 28.43 SS G_CDS: 0.42 Total: 28.85 kcal Atomic # 6 Polarization: 9.03 SS G_CDS: 6.49 Total: 15.52 kcal Atomic # 7 Polarization: -120.74 SS G_CDS: -9.31 Total: -130.05 kcal Atomic # 8 Polarization: -32.01 SS G_CDS: -0.05 Total: -32.06 kcal Atomic # 14 Polarization: 42.57 SS G_CDS: 2.03 Total: 44.59 kcal Total: -72.73 -0.43 -73.15 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000845156472.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.983 kcal (2) G-P(sol) polarization free energy of solvation -72.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.153 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds