Wall clock time and date at job start Tue Mar 31 2020 11:57:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35901 * 117.00141 * 2 1 4 4 C 1.38732 * 120.05598 * 179.97438 * 3 2 1 5 5 C 1.38142 * 119.94149 * 180.02562 * 4 3 2 6 6 C 1.38261 * 120.05823 * 0.02562 * 5 4 3 7 7 C 1.50704 * 119.94483 * 179.97438 * 6 5 4 8 8 C 1.52998 * 109.46801 * 90.00090 * 7 6 5 9 9 N 1.46511 * 109.46958 * 180.02562 * 8 7 6 10 10 C 1.37475 * 119.99977 * 180.02562 * 9 8 7 11 11 N 1.30340 * 120.00421 * 359.97438 * 10 9 8 12 12 N 1.37488 * 119.99768 * 179.97438 * 10 9 8 13 13 C 1.46503 * 119.99952 * 179.97438 * 12 10 9 14 14 C 1.53003 * 109.47274 * 184.80063 * 13 12 10 15 15 C 1.50698 * 115.54592 * 294.81478 * 14 13 12 16 16 H 1.07999 * 119.99856 * 95.20573 * 15 14 13 17 17 C 1.37872 * 120.00197 * 274.92991 * 15 14 13 18 18 N 1.31519 * 119.99744 * 355.41656 * 17 15 14 19 19 Si 1.86800 * 120.00388 * 175.42344 * 17 15 14 20 20 H 1.48504 * 109.47024 * 59.99576 * 19 17 15 21 21 H 1.48495 * 109.47490 * 179.97438 * 19 17 15 22 22 H 1.48496 * 109.46935 * 299.99946 * 19 17 15 23 23 C 1.52997 * 117.49682 * 80.48538 * 14 13 12 24 24 C 1.52998 * 117.49954 * 149.14706 * 14 13 12 25 25 C 1.38265 * 120.11033 * 0.25009 * 6 5 4 26 26 C 1.38143 * 120.05532 * 359.45268 * 25 6 5 27 27 H 1.08995 * 109.46834 * 299.99615 * 1 2 3 28 28 H 1.08998 * 109.47047 * 59.99647 * 1 2 3 29 29 H 1.09007 * 109.46938 * 179.97438 * 1 2 3 30 30 H 1.07998 * 120.02753 * 0.02562 * 4 3 2 31 31 H 1.08002 * 119.96840 * 180.02562 * 5 4 3 32 32 H 1.08996 * 109.47268 * 329.99890 * 7 6 5 33 33 H 1.09000 * 109.46856 * 209.99577 * 7 6 5 34 34 H 1.08997 * 109.47551 * 60.00385 * 8 7 6 35 35 H 1.09000 * 109.46996 * 299.99401 * 8 7 6 36 36 H 0.96999 * 119.99584 * 359.97438 * 9 8 7 37 37 H 0.97006 * 120.00048 * 0.02562 * 11 10 9 38 38 H 0.96996 * 120.00253 * 359.97438 * 12 10 9 39 39 H 1.09002 * 109.47120 * 64.79648 * 13 12 10 40 40 H 1.09007 * 109.47078 * 304.80364 * 13 12 10 41 41 H 0.97002 * 119.99961 * 185.00439 * 18 17 15 42 42 H 1.09004 * 117.49811 * 215.00299 * 23 14 13 43 43 H 1.08997 * 117.50274 * 0.02562 * 23 14 13 44 44 H 1.08998 * 117.49961 * 359.97116 * 24 14 13 45 45 H 1.08996 * 117.49982 * 144.97493 * 24 14 13 46 46 H 1.08006 * 119.97014 * 179.70544 * 25 6 5 47 47 H 1.08007 * 120.02748 * 180.24998 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 3.4314 1.2848 0.0005 5 6 4.0561 2.5169 0.0011 6 6 3.3019 3.6757 0.0016 7 6 3.9861 5.0185 0.0028 8 6 4.2181 5.4738 -1.4393 9 7 4.8838 6.7790 -1.4382 10 6 5.1959 7.3924 -2.6283 11 7 4.9000 6.8128 -3.7576 12 7 5.8201 8.6174 -2.6272 13 6 6.1532 9.2709 -3.8954 14 6 6.9417 10.5523 -3.6172 15 6 6.1878 11.6336 -2.8868 16 1 6.2708 11.7189 -1.8134 17 6 5.3965 12.5174 -3.5895 18 7 5.3699 12.4745 -4.9037 19 14 4.3625 13.7759 -2.6750 20 1 5.2488 14.6518 -1.8672 21 1 3.6087 14.6015 -3.6523 22 1 3.4085 13.0751 -1.7784 23 6 8.4368 10.4122 -3.3244 24 6 7.9694 10.9904 -4.6625 25 6 1.9211 3.6047 0.0068 26 6 1.2916 2.3751 0.0001 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 4.0209 0.3799 0.0005 31 1 5.1345 2.5749 0.0011 32 1 4.9438 4.9379 0.5169 33 1 3.3579 5.7459 0.5168 34 1 3.2604 5.5546 -1.9535 35 1 4.8464 4.7464 -1.9534 36 1 5.1037 7.2105 -0.5978 37 1 4.4593 5.9486 -3.7584 38 1 6.0400 9.0490 -1.7869 39 1 5.2354 9.5176 -4.4291 40 1 6.7572 8.5974 -4.5036 41 1 4.8710 13.1415 -5.4007 42 1 8.8752 11.1022 -2.6034 43 1 8.8589 9.4073 -3.3304 44 1 8.0843 10.3655 -5.5482 45 1 8.1001 12.0607 -4.8222 46 1 1.3343 4.5114 0.0120 47 1 0.2129 2.3202 0.0001 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000849025724.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:57:07 Heat of formation + Delta-G solvation = 37.600864 kcal Electronic energy + Delta-G solvation = -25041.337985 eV Core-core repulsion = 21418.341512 eV Total energy + Delta-G solvation = -3622.996473 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.49685 -38.53578 -37.83469 -36.58534 -34.32056 -32.12350 -31.83320 -31.39659 -30.34984 -28.53991 -27.27394 -25.92112 -24.90603 -23.26501 -22.92106 -21.20852 -21.03879 -19.62320 -19.24646 -18.51611 -17.41424 -16.66953 -16.18102 -16.07986 -15.83673 -15.32690 -15.08899 -14.65270 -14.54677 -14.11428 -14.05232 -13.85943 -13.76223 -13.33480 -13.06361 -12.78136 -12.52231 -12.37917 -12.16930 -11.82430 -11.71572 -11.47338 -11.23140 -11.14345 -10.97004 -10.91576 -10.70013 -10.46780 -10.13752 -9.39203 -9.32684 -8.92777 -8.71196 -8.42529 -8.39647 -8.17099 -8.03449 -7.23498 -5.99784 -4.08801 1.01699 1.06758 2.89810 3.25577 3.30293 3.36200 3.37245 3.47326 3.77018 4.39939 4.41361 4.51023 4.55840 4.66903 4.73385 4.79524 4.86780 4.88854 5.03659 5.05816 5.17357 5.28325 5.29034 5.40614 5.45604 5.63880 5.76956 5.80582 5.94319 6.02298 6.15660 6.33423 6.38374 6.42701 6.47332 6.64669 6.77156 6.83627 6.92932 7.02397 7.05208 7.22049 7.54201 7.59246 7.70975 7.88163 8.20037 8.43753 8.68006 8.91520 9.54202 9.57215 11.07375 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.021455 B = 0.002045 C = 0.001951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1304.721735 B =13687.242220 C =14344.851771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.319 6.319 3 C 0.122 3.878 4 C -0.150 4.150 5 C -0.073 4.073 6 C -0.116 4.116 7 C -0.084 4.084 8 C 0.140 3.860 9 N -0.782 5.782 10 C 0.633 3.367 11 N -0.838 5.838 12 N -0.706 5.706 13 C 0.197 3.803 14 C 0.023 3.977 15 C -0.497 4.497 16 H 0.057 0.943 17 C 0.073 3.927 18 N -0.874 5.874 19 Si 0.890 3.110 20 H -0.278 1.278 21 H -0.288 1.288 22 H -0.277 1.277 23 C -0.212 4.212 24 C -0.142 4.142 25 C -0.073 4.073 26 C -0.206 4.206 27 H 0.055 0.945 28 H 0.056 0.944 29 H 0.099 0.901 30 H 0.130 0.870 31 H 0.131 0.869 32 H 0.079 0.921 33 H 0.078 0.922 34 H 0.057 0.943 35 H 0.058 0.942 36 H 0.387 0.613 37 H 0.325 0.675 38 H 0.399 0.601 39 H 0.061 0.939 40 H 0.036 0.964 41 H 0.261 0.739 42 H 0.075 0.925 43 H 0.064 0.936 44 H 0.063 0.937 45 H 0.085 0.915 46 H 0.126 0.874 47 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.154 -21.604 12.312 25.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.233 6.233 3 C 0.077 3.923 4 C -0.169 4.169 5 C -0.091 4.091 6 C -0.117 4.117 7 C -0.121 4.121 8 C 0.015 3.985 9 N -0.429 5.429 10 C 0.266 3.734 11 N -0.488 5.488 12 N -0.346 5.346 13 C 0.074 3.926 14 C 0.022 3.978 15 C -0.535 4.535 16 H 0.075 0.925 17 C -0.131 4.131 18 N -0.510 5.510 19 Si 0.718 3.282 20 H -0.204 1.204 21 H -0.213 1.213 22 H -0.203 1.203 23 C -0.249 4.249 24 C -0.180 4.180 25 C -0.091 4.091 26 C -0.225 4.225 27 H 0.074 0.926 28 H 0.075 0.925 29 H 0.118 0.882 30 H 0.148 0.852 31 H 0.149 0.851 32 H 0.097 0.903 33 H 0.097 0.903 34 H 0.075 0.925 35 H 0.076 0.924 36 H 0.220 0.780 37 H 0.140 0.860 38 H 0.234 0.766 39 H 0.079 0.921 40 H 0.054 0.946 41 H 0.071 0.929 42 H 0.093 0.907 43 H 0.082 0.918 44 H 0.082 0.918 45 H 0.103 0.897 46 H 0.144 0.856 47 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -7.118 -21.537 10.901 25.166 hybrid contribution -1.120 0.576 1.813 2.208 sum -8.238 -20.961 12.714 25.863 Atomic orbital electron populations 1.23062 0.78330 1.03965 1.01445 1.86065 1.21448 1.27034 1.88753 1.19064 0.92428 0.84142 0.96648 1.20427 0.91354 0.98709 1.06367 1.20904 0.99979 0.90929 0.97312 1.19612 0.93503 0.94734 1.03807 1.20652 1.01133 0.93711 0.96643 1.21049 0.96888 0.84355 0.96206 1.45503 1.68458 1.21709 1.07270 1.19050 0.86881 0.85784 0.81640 1.69860 1.37361 1.19674 1.21935 1.44027 1.63870 1.16263 1.10406 1.20705 0.98815 0.90731 0.82385 1.19135 0.85813 0.93709 0.99162 1.20289 1.26983 1.13302 0.92894 0.92491 1.24976 0.96143 0.97172 0.94821 1.69986 1.41263 1.34401 1.05372 0.86712 0.80656 0.81317 0.79558 1.20408 1.21344 1.20290 1.22996 1.01480 0.99491 1.00957 1.22444 1.05131 0.99886 0.90569 1.20890 0.93978 0.97191 0.97010 1.21231 1.00067 0.92318 1.08859 0.92642 0.92542 0.88227 0.85164 0.85150 0.90261 0.90297 0.92456 0.92420 0.78018 0.86012 0.76590 0.92080 0.94570 0.92924 0.90658 0.91770 0.91823 0.89679 0.85581 0.85458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.14 9.81 101.05 0.99 1.13 16 2 O -0.32 -2.88 10.50 -19.43 -0.20 -3.08 16 3 C 0.12 1.16 6.69 -39.22 -0.26 0.89 16 4 C -0.15 -1.36 9.99 -39.43 -0.39 -1.75 16 5 C -0.07 -0.63 9.69 -39.61 -0.38 -1.01 16 6 C -0.12 -1.03 5.13 -104.60 -0.54 -1.56 16 7 C -0.08 -0.70 5.46 -27.88 -0.15 -0.86 16 8 C 0.14 1.56 5.00 -4.04 -0.02 1.54 16 9 N -0.78 -10.53 5.67 -61.79 -0.35 -10.88 16 10 C 0.63 11.54 8.71 -320.10 -2.79 8.75 16 11 N -0.84 -16.73 13.21 30.15 0.40 -16.33 16 12 N -0.71 -13.92 5.59 -61.79 -0.35 -14.26 16 13 C 0.20 4.58 5.50 -4.04 -0.02 4.55 16 14 C 0.02 0.54 1.47 -155.66 -0.23 0.31 16 15 C -0.50 -12.96 8.59 -34.44 -0.30 -13.26 16 16 H 0.06 1.46 7.82 -52.49 -0.41 1.05 16 17 C 0.07 1.96 5.43 -17.82 -0.10 1.86 16 18 N -0.87 -24.62 12.65 55.43 0.70 -23.92 16 19 Si 0.89 20.86 29.54 -169.99 -5.02 15.84 16 20 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 21 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 22 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 23 C -0.21 -4.54 9.96 -26.69 -0.27 -4.81 16 24 C -0.14 -3.34 9.14 -26.69 -0.24 -3.59 16 25 C -0.07 -0.63 9.69 -39.61 -0.38 -1.02 16 26 C -0.21 -1.77 9.04 -39.43 -0.36 -2.13 16 27 H 0.05 0.24 7.66 -51.93 -0.40 -0.16 16 28 H 0.06 0.26 7.66 -51.93 -0.40 -0.13 16 29 H 0.10 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.13 1.01 8.06 -52.49 -0.42 0.59 16 31 H 0.13 0.91 8.06 -52.49 -0.42 0.49 16 32 H 0.08 0.60 8.08 -51.93 -0.42 0.18 16 33 H 0.08 0.63 8.08 -51.93 -0.42 0.21 16 34 H 0.06 0.69 7.97 -51.93 -0.41 0.28 16 35 H 0.06 0.67 7.97 -51.93 -0.41 0.26 16 36 H 0.39 4.46 8.57 -40.82 -0.35 4.11 16 37 H 0.32 5.80 7.15 -40.82 -0.29 5.51 16 38 H 0.40 7.35 8.43 -40.82 -0.34 7.01 16 39 H 0.06 1.63 8.14 -51.93 -0.42 1.21 16 40 H 0.04 0.85 8.09 -51.93 -0.42 0.43 16 41 H 0.26 7.09 8.32 -40.82 -0.34 6.75 16 42 H 0.07 1.58 8.14 -51.93 -0.42 1.16 16 43 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 44 H 0.06 1.43 8.14 -51.93 -0.42 1.01 16 45 H 0.08 2.13 8.14 -51.93 -0.42 1.71 16 46 H 0.13 0.95 8.06 -52.48 -0.42 0.52 16 47 H 0.13 0.84 6.30 -52.48 -0.33 0.51 16 LS Contribution 392.91 15.07 5.92 5.92 Total: -1.00 -30.79 392.91 -11.89 -42.68 By element: Atomic # 1 Polarization: 22.52 SS G_CDS: -7.55 Total: 14.97 kcal Atomic # 6 Polarization: -5.49 SS G_CDS: -5.44 Total: -10.93 kcal Atomic # 7 Polarization: -65.80 SS G_CDS: 0.40 Total: -65.39 kcal Atomic # 8 Polarization: -2.88 SS G_CDS: -0.20 Total: -3.08 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -30.79 -11.89 -42.68 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849025724.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.284 kcal (2) G-P(sol) polarization free energy of solvation -30.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.683 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds