Wall clock time and date at job start Tue Mar 31 2020 11:57:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35901 * 117.00141 * 2 1 4 4 C 1.38732 * 120.05598 * 179.97438 * 3 2 1 5 5 C 1.38142 * 119.94149 * 180.02562 * 4 3 2 6 6 C 1.38261 * 120.05823 * 0.02562 * 5 4 3 7 7 C 1.50704 * 119.94483 * 179.97438 * 6 5 4 8 8 C 1.52998 * 109.46801 * 90.00090 * 7 6 5 9 9 N 1.46511 * 109.46958 * 180.02562 * 8 7 6 10 10 C 1.37475 * 119.99977 * 180.02562 * 9 8 7 11 11 N 1.30340 * 120.00421 * 359.97438 * 10 9 8 12 12 N 1.37488 * 119.99768 * 179.97438 * 10 9 8 13 13 C 1.46503 * 119.99952 * 179.97438 * 12 10 9 14 14 C 1.53003 * 109.47274 * 184.80063 * 13 12 10 15 15 C 1.50698 * 115.54592 * 294.81478 * 14 13 12 16 16 H 1.07999 * 119.99856 * 95.20573 * 15 14 13 17 17 C 1.37872 * 120.00197 * 274.92991 * 15 14 13 18 18 N 1.31519 * 119.99744 * 355.41656 * 17 15 14 19 19 Si 1.86800 * 120.00388 * 175.42344 * 17 15 14 20 20 H 1.48504 * 109.47024 * 59.99576 * 19 17 15 21 21 H 1.48495 * 109.47490 * 179.97438 * 19 17 15 22 22 H 1.48496 * 109.46935 * 299.99946 * 19 17 15 23 23 C 1.52997 * 117.49682 * 80.48538 * 14 13 12 24 24 C 1.52998 * 117.49954 * 149.14706 * 14 13 12 25 25 C 1.38265 * 120.11033 * 0.25009 * 6 5 4 26 26 C 1.38143 * 120.05532 * 359.45268 * 25 6 5 27 27 H 1.08995 * 109.46834 * 299.99615 * 1 2 3 28 28 H 1.08998 * 109.47047 * 59.99647 * 1 2 3 29 29 H 1.09007 * 109.46938 * 179.97438 * 1 2 3 30 30 H 1.07998 * 120.02753 * 0.02562 * 4 3 2 31 31 H 1.08002 * 119.96840 * 180.02562 * 5 4 3 32 32 H 1.08996 * 109.47268 * 329.99890 * 7 6 5 33 33 H 1.09000 * 109.46856 * 209.99577 * 7 6 5 34 34 H 1.08997 * 109.47551 * 60.00385 * 8 7 6 35 35 H 1.09000 * 109.46996 * 299.99401 * 8 7 6 36 36 H 0.96999 * 119.99584 * 359.97438 * 9 8 7 37 37 H 0.97006 * 120.00048 * 0.02562 * 11 10 9 38 38 H 0.96996 * 120.00253 * 359.97438 * 12 10 9 39 39 H 1.09002 * 109.47120 * 64.79648 * 13 12 10 40 40 H 1.09007 * 109.47078 * 304.80364 * 13 12 10 41 41 H 0.97002 * 119.99961 * 185.00439 * 18 17 15 42 42 H 1.09004 * 117.49811 * 215.00299 * 23 14 13 43 43 H 1.08997 * 117.50274 * 0.02562 * 23 14 13 44 44 H 1.08998 * 117.49961 * 359.97116 * 24 14 13 45 45 H 1.08996 * 117.49982 * 144.97493 * 24 14 13 46 46 H 1.08006 * 119.97014 * 179.70544 * 25 6 5 47 47 H 1.08007 * 120.02748 * 180.24998 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 3.4314 1.2848 0.0005 5 6 4.0561 2.5169 0.0011 6 6 3.3019 3.6757 0.0016 7 6 3.9861 5.0185 0.0028 8 6 4.2181 5.4738 -1.4393 9 7 4.8838 6.7790 -1.4382 10 6 5.1959 7.3924 -2.6283 11 7 4.9000 6.8128 -3.7576 12 7 5.8201 8.6174 -2.6272 13 6 6.1532 9.2709 -3.8954 14 6 6.9417 10.5523 -3.6172 15 6 6.1878 11.6336 -2.8868 16 1 6.2708 11.7189 -1.8134 17 6 5.3965 12.5174 -3.5895 18 7 5.3699 12.4745 -4.9037 19 14 4.3625 13.7759 -2.6750 20 1 5.2488 14.6518 -1.8672 21 1 3.6087 14.6015 -3.6523 22 1 3.4085 13.0751 -1.7784 23 6 8.4368 10.4122 -3.3244 24 6 7.9694 10.9904 -4.6625 25 6 1.9211 3.6047 0.0068 26 6 1.2916 2.3751 0.0001 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 4.0209 0.3799 0.0005 31 1 5.1345 2.5749 0.0011 32 1 4.9438 4.9379 0.5169 33 1 3.3579 5.7459 0.5168 34 1 3.2604 5.5546 -1.9535 35 1 4.8464 4.7464 -1.9534 36 1 5.1037 7.2105 -0.5978 37 1 4.4593 5.9486 -3.7584 38 1 6.0400 9.0490 -1.7869 39 1 5.2354 9.5176 -4.4291 40 1 6.7572 8.5974 -4.5036 41 1 4.8710 13.1415 -5.4007 42 1 8.8752 11.1022 -2.6034 43 1 8.8589 9.4073 -3.3304 44 1 8.0843 10.3655 -5.5482 45 1 8.1001 12.0607 -4.8222 46 1 1.3343 4.5114 0.0120 47 1 0.2129 2.3202 0.0001 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000849025724.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:57:06 Heat of formation + Delta-G solvation = 21.629435 kcal Electronic energy + Delta-G solvation = -25042.030559 eV Core-core repulsion = 21418.341512 eV Total energy + Delta-G solvation = -3623.689046 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.11432 -39.72318 -38.82288 -38.15035 -35.51445 -33.93688 -33.16785 -32.04784 -31.64582 -29.30614 -28.14138 -27.60738 -26.58035 -24.18689 -23.57258 -22.86240 -21.87886 -21.18809 -21.00304 -19.13877 -18.81340 -17.84883 -17.29406 -17.11131 -16.64614 -16.61279 -16.21413 -15.99108 -15.74387 -15.40683 -15.20838 -14.97062 -14.60825 -14.43227 -14.34879 -14.17199 -13.75885 -13.39859 -13.07151 -12.90683 -12.86963 -12.79765 -12.72643 -12.44248 -12.34171 -12.04178 -11.95249 -11.83092 -11.65792 -11.27807 -10.84401 -10.37142 -10.21206 -9.96905 -9.93411 -9.42151 -9.07761 -8.81228 -8.03650 -6.17157 0.37795 0.39975 1.44791 1.46367 1.52601 2.01242 2.31642 2.37986 2.45687 2.75931 3.23178 3.28202 3.63411 3.81546 3.92593 4.01317 4.08080 4.12325 4.30916 4.35906 4.36994 4.43635 4.50915 4.56042 4.65223 4.69342 4.73535 4.74351 4.86259 4.92405 5.01035 5.03546 5.06651 5.11655 5.24623 5.30825 5.36936 5.38109 5.66881 5.67732 5.69223 5.74011 5.81722 5.84508 6.32314 6.43242 6.43749 6.67532 6.89954 7.30737 7.51480 8.12111 9.03120 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.021455 B = 0.002045 C = 0.001951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1304.721735 B =13687.242220 C =14344.851771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.338 6.338 3 C 0.109 3.891 4 C -0.165 4.165 5 C -0.077 4.077 6 C -0.125 4.125 7 C -0.071 4.071 8 C 0.142 3.858 9 N -0.766 5.766 10 C 0.632 3.368 11 N -0.873 5.873 12 N -0.706 5.706 13 C 0.220 3.780 14 C 0.001 3.999 15 C -0.500 4.500 16 H 0.061 0.939 17 C 0.022 3.978 18 N -0.907 5.907 19 Si 0.950 3.050 20 H -0.270 1.270 21 H -0.292 1.292 22 H -0.273 1.273 23 C -0.178 4.178 24 C -0.154 4.154 25 C -0.081 4.081 26 C -0.212 4.212 27 H 0.064 0.936 28 H 0.061 0.939 29 H 0.118 0.882 30 H 0.137 0.863 31 H 0.145 0.855 32 H 0.092 0.908 33 H 0.087 0.913 34 H 0.048 0.952 35 H 0.054 0.946 36 H 0.400 0.600 37 H 0.333 0.667 38 H 0.407 0.593 39 H 0.017 0.983 40 H 0.030 0.970 41 H 0.258 0.742 42 H 0.082 0.918 43 H 0.086 0.914 44 H 0.068 0.932 45 H 0.063 0.937 46 H 0.137 0.863 47 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.279 -22.263 14.394 27.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.252 6.252 3 C 0.064 3.936 4 C -0.183 4.183 5 C -0.094 4.094 6 C -0.126 4.126 7 C -0.108 4.108 8 C 0.018 3.982 9 N -0.413 5.413 10 C 0.265 3.735 11 N -0.525 5.525 12 N -0.347 5.347 13 C 0.095 3.905 14 C 0.000 4.000 15 C -0.538 4.538 16 H 0.080 0.920 17 C -0.179 4.179 18 N -0.545 5.545 19 Si 0.776 3.224 20 H -0.195 1.195 21 H -0.218 1.218 22 H -0.198 1.198 23 C -0.215 4.215 24 C -0.192 4.192 25 C -0.099 4.099 26 C -0.231 4.231 27 H 0.083 0.917 28 H 0.080 0.920 29 H 0.136 0.864 30 H 0.155 0.845 31 H 0.163 0.837 32 H 0.111 0.889 33 H 0.106 0.894 34 H 0.066 0.934 35 H 0.073 0.927 36 H 0.235 0.765 37 H 0.149 0.851 38 H 0.243 0.757 39 H 0.035 0.965 40 H 0.049 0.951 41 H 0.067 0.933 42 H 0.101 0.899 43 H 0.104 0.896 44 H 0.086 0.914 45 H 0.082 0.918 46 H 0.155 0.845 47 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -7.249 -22.221 13.047 26.769 hybrid contribution -1.111 0.679 1.177 1.755 sum -8.360 -21.542 14.224 27.134 Atomic orbital electron populations 1.23316 0.76618 1.05494 1.02123 1.86040 1.23337 1.27058 1.88748 1.19296 0.92853 0.84640 0.96842 1.20656 0.91652 0.99319 1.06701 1.21112 1.00808 0.90714 0.96816 1.19697 0.93691 0.94895 1.04273 1.20547 1.02017 0.93584 0.94669 1.21158 0.95983 0.82946 0.98155 1.45361 1.67579 1.22127 1.06264 1.18969 0.86302 0.85217 0.83022 1.69808 1.38440 1.20625 1.23663 1.43789 1.64535 1.16888 1.09468 1.20161 0.96393 0.90503 0.83429 1.19187 0.87160 0.93741 0.99929 1.20604 1.26607 1.13373 0.93209 0.92038 1.25707 0.97377 0.99301 0.95470 1.70120 1.42416 1.35237 1.06734 0.85751 0.79173 0.79165 0.78299 1.19503 1.21841 1.19838 1.22962 0.99049 1.00457 0.99025 1.22363 1.06197 0.98837 0.91828 1.21116 0.94246 0.97720 0.96815 1.21448 1.01013 0.92056 1.08557 0.91727 0.92040 0.86398 0.84508 0.83719 0.88912 0.89432 0.93378 0.92733 0.76497 0.85097 0.75706 0.96499 0.95130 0.93349 0.89910 0.89593 0.91375 0.91834 0.84527 0.83872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.17 9.81 113.37 1.11 1.29 16 2 O -0.34 -5.84 10.50 -92.44 -0.97 -6.81 16 3 C 0.11 1.97 6.69 22.51 0.15 2.12 16 4 C -0.16 -2.86 9.99 22.37 0.22 -2.63 16 5 C -0.08 -1.21 9.69 22.25 0.22 -0.99 16 6 C -0.12 -2.00 5.13 -19.85 -0.10 -2.10 16 7 C -0.07 -1.02 5.46 29.85 0.16 -0.86 16 8 C 0.14 2.92 5.00 86.38 0.43 3.35 16 9 N -0.77 -19.14 5.67 -349.40 -1.98 -21.12 16 10 C 0.63 22.39 8.71 260.54 2.27 24.66 16 11 N -0.87 -34.63 13.21 -58.53 -0.77 -35.40 16 12 N -0.71 -27.20 5.59 -349.39 -1.95 -29.15 16 13 C 0.22 10.26 5.50 86.38 0.47 10.74 16 14 C 0.00 0.03 1.47 -52.93 -0.08 -0.05 16 15 C -0.50 -25.81 8.59 25.60 0.22 -25.59 16 16 H 0.06 3.05 7.82 -2.91 -0.02 3.03 16 17 C 0.02 1.17 5.43 84.65 0.46 1.63 16 18 N -0.91 -52.04 12.65 21.45 0.27 -51.77 16 19 Si 0.95 42.71 29.54 68.60 2.03 44.73 16 20 H -0.27 -11.67 7.11 99.48 0.71 -10.97 16 21 H -0.29 -13.27 7.11 99.48 0.71 -12.56 16 22 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 23 C -0.18 -7.28 9.96 30.62 0.30 -6.98 16 24 C -0.15 -7.24 9.14 30.62 0.28 -6.96 16 25 C -0.08 -1.30 9.69 22.25 0.22 -1.08 16 26 C -0.21 -3.39 9.04 22.36 0.20 -3.19 16 27 H 0.06 0.47 7.66 -2.39 -0.02 0.45 16 28 H 0.06 0.50 7.66 -2.39 -0.02 0.48 16 29 H 0.12 0.61 8.14 -2.38 -0.02 0.59 16 30 H 0.14 2.05 8.06 -2.91 -0.02 2.03 16 31 H 0.15 1.76 8.06 -2.91 -0.02 1.73 16 32 H 0.09 1.12 8.08 -2.39 -0.02 1.10 16 33 H 0.09 1.15 8.08 -2.39 -0.02 1.13 16 34 H 0.05 1.10 7.97 -2.39 -0.02 1.08 16 35 H 0.05 1.18 7.97 -2.39 -0.02 1.17 16 36 H 0.40 8.16 8.57 -92.71 -0.79 7.37 16 37 H 0.33 11.79 7.15 -92.70 -0.66 11.13 16 38 H 0.41 14.31 8.43 -92.71 -0.78 13.53 16 39 H 0.02 0.92 8.14 -2.39 -0.02 0.90 16 40 H 0.03 1.44 8.09 -2.38 -0.02 1.42 16 41 H 0.26 14.30 8.32 -92.71 -0.77 13.52 16 42 H 0.08 3.28 8.14 -2.39 -0.02 3.26 16 43 H 0.09 3.16 8.14 -2.39 -0.02 3.14 16 44 H 0.07 3.08 8.14 -2.39 -0.02 3.06 16 45 H 0.06 3.23 8.14 -2.39 -0.02 3.21 16 46 H 0.14 1.81 8.06 -2.91 -0.02 1.79 16 47 H 0.14 1.69 6.30 -2.91 -0.02 1.67 16 Total: -1.00 -66.07 392.91 1.92 -64.16 By element: Atomic # 1 Polarization: 43.25 SS G_CDS: -1.25 Total: 42.00 kcal Atomic # 6 Polarization: -13.18 SS G_CDS: 6.54 Total: -6.64 kcal Atomic # 7 Polarization: -133.00 SS G_CDS: -4.44 Total: -137.44 kcal Atomic # 8 Polarization: -5.84 SS G_CDS: -0.97 Total: -6.81 kcal Atomic # 14 Polarization: 42.71 SS G_CDS: 2.03 Total: 44.73 kcal Total: -66.07 1.92 -64.16 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849025724.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.787 kcal (2) G-P(sol) polarization free energy of solvation -66.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.158 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds