Wall clock time and date at job start Tue Mar 31 2020 11:23:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.39676 * 120.00329 * 2 1 4 4 C 1.38910 * 120.07279 * 354.15935 * 3 2 1 5 5 C 1.38099 * 119.92563 * 179.97438 * 4 3 2 6 6 C 1.38290 * 120.07562 * 359.97438 * 5 4 3 7 7 C 1.38287 * 120.14776 * 359.97438 * 6 5 4 8 8 C 1.38106 * 120.07759 * 0.02562 * 7 6 5 9 9 C 1.46506 * 119.99788 * 179.97438 * 2 1 3 10 10 H 1.09001 * 110.27166 * 182.55424 * 9 2 1 11 11 C 1.54588 * 110.31113 * 60.35810 * 9 2 1 12 12 C 1.54936 * 102.92536 * 219.12656 * 11 9 2 13 13 N 1.48533 * 103.22605 * 37.41178 * 12 11 9 14 14 C 1.46897 * 111.00234 * 200.28247 * 13 12 11 15 15 C 1.50709 * 109.46696 * 287.39656 * 14 13 12 16 16 O 1.21279 * 120.00183 * 0.02562 * 15 14 13 17 17 N 1.34779 * 119.99748 * 179.97438 * 15 14 13 18 18 C 1.46492 * 119.99883 * 179.97438 * 17 15 14 19 19 C 1.50703 * 109.47428 * 180.02562 * 18 17 15 20 20 H 1.08005 * 119.99677 * 359.97438 * 19 18 17 21 21 C 1.37872 * 120.00523 * 180.02562 * 19 18 17 22 22 N 1.31515 * 120.00465 * 179.97438 * 21 19 18 23 23 Si 1.86806 * 119.99705 * 0.02562 * 21 19 18 24 24 H 1.48496 * 109.47190 * 90.00105 * 23 21 19 25 25 H 1.48500 * 109.46665 * 209.99597 * 23 21 19 26 26 H 1.48495 * 109.46915 * 329.99564 * 23 21 19 27 27 C 1.47897 * 105.82016 * 320.79632 * 13 12 11 28 28 H 1.08997 * 109.46675 * 90.00396 * 1 2 3 29 29 H 1.08994 * 109.47218 * 210.00118 * 1 2 3 30 30 H 1.08996 * 109.46846 * 330.00797 * 1 2 3 31 31 H 1.07999 * 120.03467 * 359.95801 * 4 3 2 32 32 H 1.08000 * 119.96304 * 179.97438 * 5 4 3 33 33 H 1.07997 * 119.92292 * 179.72441 * 6 5 4 34 34 H 1.08003 * 119.96110 * 179.97438 * 7 6 5 35 35 H 1.07995 * 120.04051 * 179.97438 * 8 7 6 36 36 H 1.08996 * 110.72430 * 337.48541 * 11 9 2 37 37 H 1.09004 * 110.72557 * 100.76314 * 11 9 2 38 38 H 1.08998 * 110.66832 * 278.98071 * 12 11 9 39 39 H 1.09001 * 110.66997 * 155.85064 * 12 11 9 40 40 H 1.08999 * 109.47380 * 47.39488 * 14 13 12 41 41 H 1.08992 * 109.47479 * 167.39963 * 14 13 12 42 42 H 0.96998 * 119.99827 * 0.02562 * 17 15 14 43 43 H 1.09006 * 109.47643 * 300.00289 * 18 17 15 44 44 H 1.09001 * 109.47531 * 60.00149 * 18 17 15 45 45 H 0.96996 * 120.00306 * 180.02562 * 22 21 19 46 46 H 1.09003 * 109.91940 * 265.97222 * 27 13 12 47 47 H 1.09004 * 110.08435 * 144.77677 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1634 1.2096 0.0000 4 6 1.4759 2.4104 -0.1223 5 6 2.1695 3.6046 -0.1214 6 6 3.5469 3.6059 0.0016 7 6 4.2344 2.4124 0.1246 8 6 3.5470 1.2145 0.1245 9 6 2.1975 -1.2688 0.0006 10 1 3.2709 -1.0851 0.0461 11 6 1.8448 -2.0926 -1.2591 12 6 1.7719 -3.5419 -0.7162 13 7 1.1571 -3.3718 0.6251 14 6 1.4342 -4.5321 1.4823 15 6 0.6150 -5.7081 1.0161 16 8 -0.1262 -5.5912 0.0633 17 7 0.7070 -6.8900 1.6573 18 6 -0.0897 -8.0329 1.2045 19 6 0.1947 -9.2234 2.0837 20 1 0.8988 -9.1373 2.8982 21 6 -0.4432 -10.4227 1.8479 22 7 -0.1947 -11.4617 2.6149 23 14 -1.6595 -10.5722 0.4380 24 1 -0.9426 -10.9963 -0.7914 25 1 -2.6933 -11.5815 0.7811 26 1 -2.3094 -9.2578 0.2035 27 6 1.7537 -2.1416 1.1891 28 1 -0.3632 -0.0001 -1.0277 29 1 -0.3633 -0.8899 0.5138 30 1 -0.3633 0.8900 0.5137 31 1 0.4002 2.4100 -0.2183 32 1 1.6356 4.5385 -0.2169 33 1 4.0872 4.5410 -0.0025 34 1 5.3102 2.4169 0.2201 35 1 4.0845 0.2827 0.2202 36 1 0.8814 -1.7837 -1.6647 37 1 2.6282 -2.0014 -2.0115 38 1 2.7701 -3.9711 -0.6302 39 1 1.1398 -4.1602 -1.3536 40 1 2.4937 -4.7817 1.4247 41 1 1.1728 -4.2931 2.5131 42 1 1.3002 -6.9835 2.4191 43 1 -1.1492 -7.7833 1.2629 44 1 0.1709 -8.2718 0.1734 45 1 -0.6432 -12.3056 2.4487 46 1 2.6161 -2.3960 1.8055 47 1 1.0152 -1.6074 1.7868 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000852654105.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:23:41 Heat of formation + Delta-G solvation = 17.311843 kcal Electronic energy + Delta-G solvation = -25845.792532 eV Core-core repulsion = 22221.916261 eV Total energy + Delta-G solvation = -3623.876271 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.33526 -39.29975 -38.20233 -35.79076 -34.24859 -32.41776 -31.95818 -31.18264 -29.88977 -28.81768 -28.40801 -26.63348 -25.35176 -22.78774 -22.23525 -21.77198 -21.25967 -19.97940 -19.82084 -18.23122 -17.31597 -16.48099 -16.19399 -15.87776 -15.68126 -15.16377 -14.94194 -14.70999 -14.59874 -14.40782 -14.00941 -13.91174 -13.76232 -13.44060 -13.00460 -12.75855 -12.48515 -12.41987 -12.30530 -12.19133 -12.05405 -12.01395 -11.78128 -11.51962 -11.27921 -11.15361 -11.01729 -10.77096 -10.72908 -10.04338 -9.98242 -9.51267 -9.21206 -9.14518 -8.79219 -8.45870 -8.13792 -7.49828 -6.23107 -4.25453 1.22134 1.39957 2.82215 3.22737 3.26392 3.32155 3.40995 3.57865 3.68526 4.16594 4.32027 4.40808 4.48623 4.56767 4.70142 4.84949 4.95974 5.05354 5.07096 5.09562 5.12094 5.24050 5.25145 5.29102 5.34758 5.39180 5.43832 5.48414 5.51300 5.59047 5.68456 5.74628 5.80916 5.92216 6.05681 6.07086 6.28494 6.42567 6.64815 6.72543 6.76327 6.87049 7.03776 7.06281 7.23017 7.31310 7.38394 8.13238 8.50922 8.74114 8.95184 9.37181 10.88809 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.040250 B = 0.002067 C = 0.002030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 695.490846 B =13541.739802 C =13792.582919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.090 3.910 2 N -0.620 5.620 3 C 0.220 3.780 4 C -0.199 4.199 5 C -0.073 4.073 6 C -0.185 4.185 7 C -0.072 4.072 8 C -0.202 4.202 9 C 0.141 3.859 10 H 0.097 0.903 11 C -0.134 4.134 12 C 0.038 3.962 13 N -0.494 5.494 14 C 0.026 3.974 15 C 0.502 3.498 16 O -0.540 6.540 17 N -0.709 5.709 18 C 0.223 3.777 19 C -0.544 4.544 20 H 0.079 0.921 21 C 0.077 3.923 22 N -0.892 5.892 23 Si 0.877 3.123 24 H -0.273 1.273 25 H -0.283 1.283 26 H -0.261 1.261 27 C 0.022 3.978 28 H 0.047 0.953 29 H 0.080 0.920 30 H 0.065 0.935 31 H 0.121 0.879 32 H 0.118 0.882 33 H 0.115 0.885 34 H 0.118 0.882 35 H 0.120 0.880 36 H 0.082 0.918 37 H 0.074 0.926 38 H 0.043 0.957 39 H 0.099 0.901 40 H 0.063 0.937 41 H 0.100 0.900 42 H 0.395 0.605 43 H 0.025 0.975 44 H 0.019 0.981 45 H 0.268 0.732 46 H 0.051 0.949 47 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.962 28.291 -4.469 29.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.329 5.329 3 C 0.118 3.882 4 C -0.221 4.221 5 C -0.091 4.091 6 C -0.205 4.205 7 C -0.091 4.091 8 C -0.224 4.224 9 C 0.036 3.964 10 H 0.114 0.886 11 C -0.173 4.173 12 C -0.090 4.090 13 N -0.218 5.218 14 C -0.105 4.105 15 C 0.286 3.714 16 O -0.418 6.418 17 N -0.358 5.358 18 C 0.100 3.900 19 C -0.582 4.582 20 H 0.097 0.903 21 C -0.127 4.127 22 N -0.530 5.530 23 Si 0.703 3.297 24 H -0.199 1.199 25 H -0.209 1.209 26 H -0.185 1.185 27 C -0.107 4.107 28 H 0.066 0.934 29 H 0.099 0.901 30 H 0.083 0.917 31 H 0.139 0.861 32 H 0.136 0.864 33 H 0.133 0.867 34 H 0.136 0.864 35 H 0.138 0.862 36 H 0.100 0.900 37 H 0.092 0.908 38 H 0.062 0.938 39 H 0.117 0.883 40 H 0.081 0.919 41 H 0.118 0.882 42 H 0.228 0.772 43 H 0.043 0.957 44 H 0.037 0.963 45 H 0.077 0.923 46 H 0.069 0.931 47 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 6.677 28.011 -5.145 29.252 hybrid contribution 0.566 -0.507 -0.088 0.765 sum 7.243 27.505 -5.233 28.920 Atomic orbital electron populations 1.21645 0.79209 1.03069 1.01388 1.46536 1.04999 1.02125 1.79274 1.17887 0.91253 0.85798 0.93219 1.20695 0.99797 0.91208 1.10429 1.20888 0.94251 0.97138 0.96867 1.20883 0.94409 0.97805 1.07442 1.20882 0.99338 0.92032 0.96852 1.20719 0.92454 0.98601 1.10661 1.21923 0.96549 0.83148 0.94780 0.88553 1.22916 1.02893 0.94500 0.96970 1.23312 0.97932 0.96663 0.91113 1.64491 1.54142 1.00929 1.02249 1.22206 0.98587 0.91075 0.98660 1.20288 0.83421 0.83833 0.83871 1.90637 1.39495 1.83732 1.27943 1.46170 1.45351 1.10859 1.33467 1.19459 0.91228 0.83693 0.95586 1.21100 1.27395 0.93711 1.15990 0.90284 1.24802 0.96279 0.95318 0.96256 1.69878 1.42725 1.01815 1.38551 0.86810 0.81450 0.78808 0.82585 1.19877 1.20892 1.18482 1.23321 0.98820 0.91733 0.96832 0.93423 0.90107 0.91687 0.86109 0.86408 0.86701 0.86391 0.86178 0.89967 0.90757 0.93837 0.88280 0.91910 0.88197 0.77156 0.95739 0.96282 0.92256 0.93058 0.89468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.77 8.82 59.85 0.53 1.30 16 2 N -0.62 -5.77 2.93 -170.45 -0.50 -6.27 16 3 C 0.22 2.14 6.54 -83.78 -0.55 1.59 16 4 C -0.20 -1.80 9.16 -39.38 -0.36 -2.16 16 5 C -0.07 -0.60 10.04 -39.61 -0.40 -1.00 16 6 C -0.19 -1.51 10.04 -39.54 -0.40 -1.91 16 7 C -0.07 -0.60 10.04 -39.61 -0.40 -1.00 16 8 C -0.20 -1.84 9.31 -39.38 -0.37 -2.21 16 9 C 0.14 1.29 3.33 -66.57 -0.22 1.07 16 10 H 0.10 0.79 5.39 -51.93 -0.28 0.51 16 11 C -0.13 -1.33 6.66 -24.88 -0.17 -1.50 16 12 C 0.04 0.46 5.93 -1.90 -0.01 0.45 16 13 N -0.49 -6.32 4.91 -231.89 -1.14 -7.45 16 14 C 0.03 0.35 5.19 -4.97 -0.03 0.32 16 15 C 0.50 9.28 7.66 -10.98 -0.08 9.20 16 16 O -0.54 -12.01 15.06 5.56 0.08 -11.93 16 17 N -0.71 -14.07 5.55 -61.47 -0.34 -14.41 16 18 C 0.22 5.44 4.50 -5.20 -0.02 5.42 16 19 C -0.54 -14.85 9.83 -34.44 -0.34 -15.19 16 20 H 0.08 2.24 7.84 -52.48 -0.41 1.83 16 21 C 0.08 2.18 5.47 -17.82 -0.10 2.08 16 22 N -0.89 -26.41 13.96 55.43 0.77 -25.64 16 23 Si 0.88 21.42 27.47 -169.99 -4.67 16.75 16 24 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 25 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 26 H -0.26 -6.34 6.54 56.52 0.37 -5.97 16 27 C 0.02 0.22 5.80 -2.76 -0.02 0.20 16 28 H 0.05 0.41 7.91 -51.93 -0.41 0.00 16 29 H 0.08 0.78 6.64 -51.93 -0.34 0.43 16 30 H 0.06 0.49 6.46 -51.93 -0.34 0.15 16 31 H 0.12 0.96 6.31 -52.49 -0.33 0.63 16 32 H 0.12 0.73 8.06 -52.49 -0.42 0.31 16 33 H 0.11 0.73 8.06 -52.49 -0.42 0.31 16 34 H 0.12 0.75 8.06 -52.48 -0.42 0.32 16 35 H 0.12 0.97 5.77 -52.49 -0.30 0.66 16 36 H 0.08 0.90 7.06 -51.93 -0.37 0.53 16 37 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.04 0.49 7.81 -51.93 -0.41 0.09 16 39 H 0.10 1.49 7.10 -51.93 -0.37 1.12 16 40 H 0.06 0.71 7.83 -51.93 -0.41 0.30 16 41 H 0.10 1.15 8.08 -51.93 -0.42 0.73 16 42 H 0.40 6.84 8.32 -40.82 -0.34 6.50 16 43 H 0.02 0.64 7.20 -51.93 -0.37 0.26 16 44 H 0.02 0.49 7.57 -51.93 -0.39 0.10 16 45 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 46 H 0.05 0.45 7.77 -51.93 -0.40 0.05 16 47 H 0.09 0.90 6.79 -51.93 -0.35 0.54 16 LS Contribution 371.42 15.07 5.60 5.60 Total: -1.00 -32.32 371.42 -10.22 -42.54 By element: Atomic # 1 Polarization: 11.25 SS G_CDS: -7.10 Total: 4.15 kcal Atomic # 6 Polarization: -0.42 SS G_CDS: -2.92 Total: -3.34 kcal Atomic # 7 Polarization: -52.57 SS G_CDS: -1.20 Total: -53.77 kcal Atomic # 8 Polarization: -12.01 SS G_CDS: 0.08 Total: -11.93 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -4.67 Total: 16.75 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -32.32 -10.22 -42.54 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000852654105.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.853 kcal (2) G-P(sol) polarization free energy of solvation -32.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.541 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds