Wall clock time and date at job start Tue Mar 31 2020 11:23:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.39676 * 120.00329 * 2 1 4 4 C 1.38910 * 120.07279 * 354.15935 * 3 2 1 5 5 C 1.38099 * 119.92563 * 179.97438 * 4 3 2 6 6 C 1.38290 * 120.07562 * 359.97438 * 5 4 3 7 7 C 1.38287 * 120.14776 * 359.97438 * 6 5 4 8 8 C 1.38106 * 120.07759 * 0.02562 * 7 6 5 9 9 C 1.46506 * 119.99788 * 179.97438 * 2 1 3 10 10 H 1.09001 * 110.27166 * 182.55424 * 9 2 1 11 11 C 1.54588 * 110.31113 * 60.35810 * 9 2 1 12 12 C 1.54936 * 102.92536 * 219.12656 * 11 9 2 13 13 N 1.48533 * 103.22605 * 37.41178 * 12 11 9 14 14 C 1.46897 * 111.00234 * 200.28247 * 13 12 11 15 15 C 1.50709 * 109.46696 * 287.39656 * 14 13 12 16 16 O 1.21279 * 120.00183 * 0.02562 * 15 14 13 17 17 N 1.34779 * 119.99748 * 179.97438 * 15 14 13 18 18 C 1.46492 * 119.99883 * 179.97438 * 17 15 14 19 19 C 1.50703 * 109.47428 * 180.02562 * 18 17 15 20 20 H 1.08005 * 119.99677 * 359.97438 * 19 18 17 21 21 C 1.37872 * 120.00523 * 180.02562 * 19 18 17 22 22 N 1.31515 * 120.00465 * 179.97438 * 21 19 18 23 23 Si 1.86806 * 119.99705 * 0.02562 * 21 19 18 24 24 H 1.48496 * 109.47190 * 90.00105 * 23 21 19 25 25 H 1.48500 * 109.46665 * 209.99597 * 23 21 19 26 26 H 1.48495 * 109.46915 * 329.99564 * 23 21 19 27 27 C 1.47897 * 105.82016 * 320.79632 * 13 12 11 28 28 H 1.08997 * 109.46675 * 90.00396 * 1 2 3 29 29 H 1.08994 * 109.47218 * 210.00118 * 1 2 3 30 30 H 1.08996 * 109.46846 * 330.00797 * 1 2 3 31 31 H 1.07999 * 120.03467 * 359.95801 * 4 3 2 32 32 H 1.08000 * 119.96304 * 179.97438 * 5 4 3 33 33 H 1.07997 * 119.92292 * 179.72441 * 6 5 4 34 34 H 1.08003 * 119.96110 * 179.97438 * 7 6 5 35 35 H 1.07995 * 120.04051 * 179.97438 * 8 7 6 36 36 H 1.08996 * 110.72430 * 337.48541 * 11 9 2 37 37 H 1.09004 * 110.72557 * 100.76314 * 11 9 2 38 38 H 1.08998 * 110.66832 * 278.98071 * 12 11 9 39 39 H 1.09001 * 110.66997 * 155.85064 * 12 11 9 40 40 H 1.08999 * 109.47380 * 47.39488 * 14 13 12 41 41 H 1.08992 * 109.47479 * 167.39963 * 14 13 12 42 42 H 0.96998 * 119.99827 * 0.02562 * 17 15 14 43 43 H 1.09006 * 109.47643 * 300.00289 * 18 17 15 44 44 H 1.09001 * 109.47531 * 60.00149 * 18 17 15 45 45 H 0.96996 * 120.00306 * 180.02562 * 22 21 19 46 46 H 1.09003 * 109.91940 * 265.97222 * 27 13 12 47 47 H 1.09004 * 110.08435 * 144.77677 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1634 1.2096 0.0000 4 6 1.4759 2.4104 -0.1223 5 6 2.1695 3.6046 -0.1214 6 6 3.5469 3.6059 0.0016 7 6 4.2344 2.4124 0.1246 8 6 3.5470 1.2145 0.1245 9 6 2.1975 -1.2688 0.0006 10 1 3.2709 -1.0851 0.0461 11 6 1.8448 -2.0926 -1.2591 12 6 1.7719 -3.5419 -0.7162 13 7 1.1571 -3.3718 0.6251 14 6 1.4342 -4.5321 1.4823 15 6 0.6150 -5.7081 1.0161 16 8 -0.1262 -5.5912 0.0633 17 7 0.7070 -6.8900 1.6573 18 6 -0.0897 -8.0329 1.2045 19 6 0.1947 -9.2234 2.0837 20 1 0.8988 -9.1373 2.8982 21 6 -0.4432 -10.4227 1.8479 22 7 -0.1947 -11.4617 2.6149 23 14 -1.6595 -10.5722 0.4380 24 1 -0.9426 -10.9963 -0.7914 25 1 -2.6933 -11.5815 0.7811 26 1 -2.3094 -9.2578 0.2035 27 6 1.7537 -2.1416 1.1891 28 1 -0.3632 -0.0001 -1.0277 29 1 -0.3633 -0.8899 0.5138 30 1 -0.3633 0.8900 0.5137 31 1 0.4002 2.4100 -0.2183 32 1 1.6356 4.5385 -0.2169 33 1 4.0872 4.5410 -0.0025 34 1 5.3102 2.4169 0.2201 35 1 4.0845 0.2827 0.2202 36 1 0.8814 -1.7837 -1.6647 37 1 2.6282 -2.0014 -2.0115 38 1 2.7701 -3.9711 -0.6302 39 1 1.1398 -4.1602 -1.3536 40 1 2.4937 -4.7817 1.4247 41 1 1.1728 -4.2931 2.5131 42 1 1.3002 -6.9835 2.4191 43 1 -1.1492 -7.7833 1.2629 44 1 0.1709 -8.2718 0.1734 45 1 -0.6432 -12.3056 2.4487 46 1 2.6161 -2.3960 1.8055 47 1 1.0152 -1.6074 1.7868 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000852654105.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:23:40 Heat of formation + Delta-G solvation = -4.528413 kcal Electronic energy + Delta-G solvation = -25846.739597 eV Core-core repulsion = 22221.916261 eV Total energy + Delta-G solvation = -3624.823336 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.18733 -40.42576 -39.23573 -36.61323 -36.03916 -34.40477 -32.90264 -31.83978 -30.60703 -30.23581 -29.48905 -27.74360 -26.26061 -24.04784 -23.39454 -22.43881 -22.38590 -21.39048 -20.66005 -19.22442 -18.80917 -17.75680 -17.42355 -16.97021 -16.54867 -16.46522 -16.26961 -15.78010 -15.48029 -15.38231 -15.08730 -15.04521 -14.66128 -14.53887 -14.35647 -14.15950 -13.92706 -13.49916 -13.23484 -13.10052 -12.99441 -12.89067 -12.76584 -12.74504 -12.62923 -12.26006 -12.14427 -11.94824 -11.86896 -11.66160 -11.43722 -10.92742 -10.80308 -10.63468 -9.90523 -9.76320 -9.39319 -8.40963 -8.16702 -6.47772 0.60252 0.76572 1.31348 1.33917 1.46494 1.77749 2.12011 2.26821 2.34692 2.94404 3.04998 3.08723 3.58992 3.69401 3.83832 3.98457 4.07868 4.21484 4.25721 4.29096 4.31477 4.36122 4.42357 4.46665 4.60546 4.68352 4.69412 4.72796 4.79436 4.82547 4.85229 4.96690 5.02728 5.02922 5.04882 5.13070 5.22586 5.25994 5.43539 5.54636 5.68065 5.81620 5.83232 5.87966 6.06977 6.10475 6.36321 6.53566 6.65118 6.88951 7.15796 7.46615 8.73672 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.040250 B = 0.002067 C = 0.002030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 695.490846 B =13541.739802 C =13792.582919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.623 5.623 3 C 0.204 3.796 4 C -0.212 4.212 5 C -0.080 4.080 6 C -0.193 4.193 7 C -0.080 4.080 8 C -0.213 4.213 9 C 0.147 3.853 10 H 0.112 0.888 11 C -0.125 4.125 12 C 0.039 3.961 13 N -0.516 5.516 14 C 0.038 3.962 15 C 0.500 3.500 16 O -0.580 6.580 17 N -0.709 5.709 18 C 0.235 3.765 19 C -0.546 4.546 20 H 0.060 0.940 21 C 0.026 3.974 22 N -0.931 5.931 23 Si 0.937 3.063 24 H -0.265 1.265 25 H -0.273 1.273 26 H -0.262 1.262 27 C 0.028 3.972 28 H 0.044 0.956 29 H 0.069 0.931 30 H 0.075 0.925 31 H 0.126 0.874 32 H 0.135 0.865 33 H 0.132 0.868 34 H 0.137 0.863 35 H 0.130 0.870 36 H 0.068 0.932 37 H 0.087 0.913 38 H 0.056 0.944 39 H 0.063 0.937 40 H 0.091 0.909 41 H 0.124 0.876 42 H 0.408 0.592 43 H 0.009 0.991 44 H 0.009 0.991 45 H 0.272 0.728 46 H 0.071 0.929 47 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.051 30.289 -4.601 31.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 N -0.333 5.333 3 C 0.103 3.897 4 C -0.234 4.234 5 C -0.099 4.099 6 C -0.212 4.212 7 C -0.098 4.098 8 C -0.235 4.235 9 C 0.042 3.958 10 H 0.130 0.870 11 C -0.165 4.165 12 C -0.089 4.089 13 N -0.241 5.241 14 C -0.093 4.093 15 C 0.287 3.713 16 O -0.460 6.460 17 N -0.360 5.360 18 C 0.111 3.889 19 C -0.584 4.584 20 H 0.078 0.922 21 C -0.174 4.174 22 N -0.569 5.569 23 Si 0.761 3.239 24 H -0.190 1.190 25 H -0.198 1.198 26 H -0.187 1.187 27 C -0.101 4.101 28 H 0.063 0.937 29 H 0.087 0.913 30 H 0.093 0.907 31 H 0.144 0.856 32 H 0.153 0.847 33 H 0.150 0.850 34 H 0.154 0.846 35 H 0.147 0.853 36 H 0.086 0.914 37 H 0.106 0.894 38 H 0.074 0.926 39 H 0.082 0.918 40 H 0.109 0.891 41 H 0.141 0.859 42 H 0.244 0.756 43 H 0.027 0.973 44 H 0.027 0.973 45 H 0.081 0.919 46 H 0.089 0.911 47 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 7.794 30.042 -5.258 31.479 hybrid contribution 0.267 -1.048 -0.021 1.082 sum 8.061 28.994 -5.279 30.553 Atomic orbital electron populations 1.21593 0.79228 1.02968 1.01161 1.46533 1.05028 1.02149 1.79539 1.18078 0.91738 0.85956 0.93943 1.20887 1.00293 0.91496 1.10734 1.21174 0.94646 0.97656 0.96426 1.21193 0.94591 0.98633 1.06827 1.21180 1.00435 0.91861 0.96337 1.20917 0.92360 0.99396 1.10800 1.21892 0.97302 0.82878 0.93768 0.87046 1.22835 1.02683 0.93221 0.97717 1.23207 0.97562 0.97489 0.90653 1.64391 1.55469 1.01661 1.02549 1.22142 0.98773 0.88893 0.99479 1.21240 0.82973 0.84375 0.82743 1.90623 1.41315 1.84380 1.29699 1.46025 1.45320 1.10421 1.34248 1.19033 0.91040 0.84367 0.94494 1.21310 1.26629 0.94808 1.15688 0.92165 1.25598 0.98073 0.95136 0.98622 1.69977 1.44145 1.02514 1.40300 0.85861 0.79480 0.78752 0.79810 1.18983 1.19809 1.18665 1.23305 0.99266 0.90340 0.97148 0.93748 0.91253 0.90658 0.85616 0.84683 0.85004 0.84551 0.85277 0.91366 0.89400 0.92609 0.91801 0.89150 0.85856 0.75634 0.97289 0.97272 0.91855 0.91108 0.89825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.55 8.82 127.77 1.13 2.68 16 2 N -0.62 -10.72 2.93 -693.18 -2.03 -12.75 16 3 C 0.20 3.64 6.54 38.21 0.25 3.89 16 4 C -0.21 -3.55 9.16 22.40 0.21 -3.35 16 5 C -0.08 -1.19 10.04 22.25 0.22 -0.96 16 6 C -0.19 -2.73 10.04 22.29 0.22 -2.51 16 7 C -0.08 -1.15 10.04 22.25 0.22 -0.92 16 8 C -0.21 -3.43 9.31 22.40 0.21 -3.23 16 9 C 0.15 2.39 3.33 45.87 0.15 2.54 16 10 H 0.11 1.51 5.39 -2.39 -0.01 1.49 16 11 C -0.13 -2.36 6.66 31.80 0.21 -2.14 16 12 C 0.04 0.91 5.93 86.65 0.51 1.43 16 13 N -0.52 -12.41 4.91 -887.58 -4.35 -16.77 16 14 C 0.04 0.92 5.19 85.56 0.44 1.37 16 15 C 0.50 18.12 7.66 87.66 0.67 18.79 16 16 O -0.58 -25.98 15.06 -3.03 -0.05 -26.03 16 17 N -0.71 -27.78 5.55 -466.78 -2.59 -30.37 16 18 C 0.23 11.51 4.50 85.64 0.38 11.90 16 19 C -0.55 -30.12 9.83 25.60 0.25 -29.86 16 20 H 0.06 3.47 7.84 -2.91 -0.02 3.44 16 21 C 0.03 1.47 5.47 84.65 0.46 1.94 16 22 N -0.93 -55.51 13.96 21.45 0.30 -55.21 16 23 Si 0.94 44.29 27.47 68.60 1.88 46.18 16 24 H -0.26 -12.10 7.11 99.48 0.71 -11.39 16 25 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 26 H -0.26 -12.38 6.54 99.48 0.65 -11.73 16 27 C 0.03 0.49 5.80 86.45 0.50 0.99 16 28 H 0.04 0.75 7.91 -2.39 -0.02 0.73 16 29 H 0.07 1.31 6.64 -2.39 -0.02 1.29 16 30 H 0.07 1.06 6.46 -2.39 -0.02 1.05 16 31 H 0.13 1.87 6.31 -2.91 -0.02 1.85 16 32 H 0.14 1.41 8.06 -2.91 -0.02 1.39 16 33 H 0.13 1.34 8.06 -2.91 -0.02 1.32 16 34 H 0.14 1.36 8.06 -2.91 -0.02 1.34 16 35 H 0.13 1.74 5.77 -2.91 -0.02 1.73 16 36 H 0.07 1.47 7.06 -2.39 -0.02 1.46 16 37 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 38 H 0.06 1.16 7.81 -2.39 -0.02 1.14 16 39 H 0.06 1.96 7.10 -2.39 -0.02 1.95 16 40 H 0.09 1.73 7.83 -2.39 -0.02 1.72 16 41 H 0.12 2.44 8.08 -2.39 -0.02 2.42 16 42 H 0.41 13.76 8.32 -92.71 -0.77 12.99 16 43 H 0.01 0.48 7.20 -2.38 -0.02 0.46 16 44 H 0.01 0.48 7.57 -2.39 -0.02 0.46 16 45 H 0.27 15.14 8.31 -92.71 -0.77 14.37 16 46 H 0.07 0.99 7.77 -2.39 -0.02 0.97 16 47 H 0.08 1.56 6.79 -2.38 -0.02 1.54 16 Total: -1.00 -70.09 371.42 -0.63 -70.72 By element: Atomic # 1 Polarization: 21.54 SS G_CDS: 0.15 Total: 21.69 kcal Atomic # 6 Polarization: -3.52 SS G_CDS: 6.06 Total: 2.54 kcal Atomic # 7 Polarization: -106.43 SS G_CDS: -8.67 Total: -115.10 kcal Atomic # 8 Polarization: -25.98 SS G_CDS: -0.05 Total: -26.03 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 1.88 Total: 46.18 kcal Total: -70.09 -0.63 -70.72 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000852654105.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.190 kcal (2) G-P(sol) polarization free energy of solvation -70.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.718 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds