Wall clock time and date at job start Tue Mar 31 2020 11:37:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46900 * 110.99949 * 2 1 4 4 C 1.46899 * 110.99804 * 123.95202 * 2 1 3 5 5 C 1.50695 * 109.47203 * 66.04903 * 4 2 1 6 6 C 1.38331 * 119.86607 * 90.00063 * 5 4 2 7 7 C 1.37991 * 120.13866 * 179.97438 * 6 5 4 8 8 C 1.39467 * 119.85841 * 0.02562 * 7 6 5 9 9 C 1.48056 * 120.13362 * 179.97438 * 8 7 6 10 10 N 1.38467 * 119.99899 * 359.97438 * 9 8 7 11 11 N 1.30065 * 120.00143 * 179.97438 * 9 8 7 12 12 O 1.41599 * 119.99667 * 182.76323 * 11 9 8 13 13 C 1.42903 * 113.99738 * 184.92325 * 12 11 9 14 14 C 1.52999 * 109.47026 * 175.88087 * 13 12 11 15 15 C 1.50697 * 115.54859 * 306.64665 * 14 13 12 16 16 H 1.08003 * 120.00030 * 144.23079 * 15 14 13 17 17 C 1.37879 * 120.00432 * 324.22922 * 15 14 13 18 18 N 1.31512 * 119.99605 * 347.70987 * 17 15 14 19 19 Si 1.86794 * 120.00230 * 167.70392 * 17 15 14 20 20 H 1.48502 * 109.47430 * 90.00178 * 19 17 15 21 21 H 1.48499 * 109.47429 * 210.00632 * 19 17 15 22 22 H 1.48510 * 109.47273 * 330.00313 * 19 17 15 23 23 C 1.52999 * 117.49712 * 160.98532 * 14 13 12 24 24 C 1.52995 * 117.49847 * 92.32283 * 14 13 12 25 25 C 1.39473 * 119.73549 * 0.25054 * 8 7 6 26 26 C 1.37981 * 119.85946 * 359.49362 * 25 8 7 27 27 H 1.08999 * 109.47544 * 296.04679 * 1 2 3 28 28 H 1.08999 * 109.47027 * 56.04623 * 1 2 3 29 29 H 1.08995 * 109.46922 * 176.04937 * 1 2 3 30 30 H 1.08993 * 109.47157 * 183.95152 * 3 2 1 31 31 H 1.09005 * 109.46768 * 303.95578 * 3 2 1 32 32 H 1.09003 * 109.47524 * 63.94972 * 3 2 1 33 33 H 1.09004 * 109.47391 * 306.04289 * 4 2 1 34 34 H 1.08998 * 109.46855 * 186.04824 * 4 2 1 35 35 H 1.08001 * 119.93257 * 359.97438 * 6 5 4 36 36 H 1.08002 * 120.07159 * 179.97438 * 7 6 5 37 37 H 0.97009 * 119.99758 * 354.07195 * 10 9 8 38 38 H 0.96998 * 120.00515 * 174.07499 * 10 9 8 39 39 H 1.09001 * 109.47341 * 295.88250 * 13 12 11 40 40 H 1.09003 * 109.46952 * 55.88069 * 13 12 11 41 41 H 0.97003 * 119.99837 * 185.04568 * 18 17 15 42 42 H 1.09004 * 117.49926 * 359.97438 * 23 14 13 43 43 H 1.08996 * 117.50403 * 145.01979 * 23 14 13 44 44 H 1.09008 * 117.49837 * 214.97340 * 24 14 13 45 45 H 1.08997 * 117.50168 * 359.97438 * 24 14 13 46 46 H 1.07998 * 120.07161 * 179.72790 * 25 8 7 47 47 H 1.08002 * 119.93510 * 180.23096 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9954 -0.7659 1.1376 5 6 1.6370 -2.2203 0.9729 6 6 2.4966 -3.0697 0.2998 7 6 2.1742 -4.4026 0.1461 8 6 0.9785 -4.8927 0.6708 9 6 0.6263 -6.3216 0.5090 10 7 1.4845 -7.1742 -0.1648 11 7 -0.4892 -6.7761 0.9997 12 8 -0.7989 -8.1539 0.8962 13 6 -2.1006 -8.4948 1.3772 14 6 -2.3652 -9.9802 1.1235 15 6 -2.1669 -10.4424 -0.2970 16 1 -1.7653 -11.4254 -0.4940 17 6 -2.4983 -9.6104 -1.3454 18 7 -3.2043 -8.5232 -1.1241 19 14 -1.9442 -10.0273 -3.0799 20 1 -2.9776 -10.8632 -3.7422 21 1 -1.7512 -8.7740 -3.8527 22 1 -0.6631 -10.7764 -3.0237 23 6 -3.4769 -10.6484 1.9351 24 6 -2.0103 -10.9620 2.2420 25 6 0.1132 -4.0302 1.3434 26 6 0.4492 -2.7005 1.4951 27 1 -0.3634 0.4512 0.9233 28 1 -0.3633 0.5740 -0.8524 29 1 -0.3633 -1.0252 -0.0708 30 1 3.0827 1.3433 -0.0708 31 1 1.5897 1.9163 -0.8525 32 1 1.7043 1.8724 0.9233 33 1 1.5611 -0.3872 2.0629 34 1 3.0797 -0.6610 1.1757 35 1 3.4220 -2.6889 -0.1064 36 1 2.8460 -5.0647 -0.3799 37 1 2.2733 -6.8203 -0.6047 38 1 1.2969 -8.1254 -0.1970 39 1 -2.1571 -8.2931 2.4469 40 1 -2.8486 -7.8981 0.8550 41 1 -3.4999 -7.9768 -1.8691 42 1 -4.0195 -10.0298 2.6500 43 1 -4.0645 -11.4226 1.4418 44 1 -1.6338 -11.9425 1.9503 45 1 -1.5880 -10.5498 3.1583 46 1 -0.8162 -4.4030 1.7480 47 1 -0.2182 -2.0323 2.0190 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000853673413.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:37:41 Heat of formation + Delta-G solvation = 79.297850 kcal Electronic energy + Delta-G solvation = -25981.292081 eV Core-core repulsion = 22360.103725 eV Total energy + Delta-G solvation = -3621.188356 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.73782 -37.66146 -36.96671 -36.08214 -34.16030 -32.04825 -31.60993 -31.10075 -29.60008 -27.82726 -27.11301 -25.70072 -24.76304 -23.14391 -22.42773 -21.34777 -21.10363 -19.58597 -19.00815 -17.29462 -16.76076 -16.16438 -15.81806 -15.74226 -15.59350 -15.11108 -14.70741 -14.47979 -14.23826 -14.05643 -13.83083 -13.43360 -13.16259 -12.91334 -12.76400 -12.62808 -12.46570 -12.36896 -11.97611 -11.90447 -11.57489 -11.47202 -11.18053 -11.00479 -10.92081 -10.76662 -10.43345 -10.26838 -9.52567 -9.37064 -9.28033 -8.95119 -8.84185 -8.82278 -8.61997 -8.57294 -7.98607 -7.27752 -5.93624 -3.97288 0.98560 1.42558 3.06388 3.30885 3.38876 3.42218 3.70468 3.74595 4.10821 4.15376 4.43488 4.55229 4.71572 4.88458 4.96136 5.04174 5.06088 5.10681 5.20206 5.32969 5.36359 5.41344 5.49262 5.52581 5.64141 5.65483 5.76100 5.87105 6.04675 6.20308 6.36612 6.40240 6.47921 6.50026 6.66716 6.67833 6.72061 6.73214 6.79090 6.92483 6.95806 7.17773 7.33610 7.43899 7.62664 7.72319 8.01374 8.23652 8.48147 8.83629 8.98260 9.61445 11.06886 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.017641 B = 0.002797 C = 0.002681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1586.792598 B =10009.178060 C =10441.484091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.542 5.542 3 C 0.024 3.976 4 C 0.094 3.906 5 C -0.077 4.077 6 C -0.100 4.100 7 C -0.102 4.102 8 C -0.025 4.025 9 C 0.377 3.623 10 N -0.878 5.878 11 N -0.405 5.405 12 O -0.203 6.203 13 C 0.123 3.877 14 C 0.056 3.944 15 C -0.488 4.488 16 H 0.058 0.942 17 C 0.079 3.921 18 N -0.872 5.872 19 Si 0.891 3.109 20 H -0.282 1.282 21 H -0.287 1.287 22 H -0.274 1.274 23 C -0.195 4.195 24 C -0.212 4.212 25 C -0.075 4.075 26 C -0.116 4.116 27 H 0.025 0.975 28 H 0.067 0.933 29 H 0.077 0.923 30 H 0.068 0.932 31 H 0.069 0.931 32 H 0.024 0.976 33 H 0.043 0.957 34 H 0.083 0.917 35 H 0.125 0.875 36 H 0.124 0.876 37 H 0.386 0.614 38 H 0.411 0.589 39 H 0.005 0.995 40 H 0.096 0.904 41 H 0.260 0.740 42 H 0.065 0.935 43 H 0.081 0.919 44 H 0.075 0.925 45 H 0.067 0.933 46 H 0.139 0.861 47 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.575 17.903 3.606 21.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.266 5.266 3 C -0.124 4.124 4 C -0.034 4.034 5 C -0.078 4.078 6 C -0.119 4.119 7 C -0.122 4.122 8 C -0.028 4.028 9 C 0.099 3.901 10 N -0.433 5.433 11 N -0.166 5.166 12 O -0.218 6.218 13 C 0.046 3.954 14 C 0.055 3.945 15 C -0.525 4.525 16 H 0.077 0.923 17 C -0.124 4.124 18 N -0.508 5.508 19 Si 0.719 3.281 20 H -0.209 1.209 21 H -0.212 1.212 22 H -0.198 1.198 23 C -0.233 4.233 24 C -0.249 4.249 25 C -0.095 4.095 26 C -0.135 4.135 27 H 0.044 0.956 28 H 0.086 0.914 29 H 0.096 0.904 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.043 0.957 33 H 0.062 0.938 34 H 0.101 0.899 35 H 0.143 0.857 36 H 0.142 0.858 37 H 0.214 0.786 38 H 0.242 0.758 39 H 0.023 0.977 40 H 0.113 0.887 41 H 0.070 0.930 42 H 0.084 0.916 43 H 0.099 0.901 44 H 0.094 0.906 45 H 0.086 0.914 46 H 0.156 0.844 47 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 10.918 18.012 3.531 21.357 hybrid contribution 0.513 -0.481 -0.734 1.016 sum 11.430 17.531 2.797 21.114 Atomic orbital electron populations 1.22506 0.86978 1.03216 1.00303 1.61992 1.08488 1.13435 1.42684 1.22395 1.00749 0.88716 1.00542 1.21072 1.00390 0.90161 0.91731 1.19734 0.94957 0.94698 0.98395 1.20789 0.99744 0.92614 0.98726 1.21064 0.95900 0.95732 0.99495 1.18176 0.95213 0.89309 1.00074 1.20876 0.87421 0.89745 0.92063 1.42825 1.28692 1.10711 1.61113 1.76812 1.14125 1.00349 1.25297 1.89758 1.35842 1.11848 1.84330 1.21981 0.84147 0.95960 0.93304 1.18871 0.96062 0.88204 0.91413 1.20364 1.43176 1.00729 0.88214 0.92350 1.24885 0.94252 0.94467 0.98831 1.69838 1.34686 1.15279 1.31023 0.86615 0.79322 0.77638 0.84536 1.20855 1.21235 1.19844 1.22941 0.90859 1.04691 1.04794 1.22941 0.98806 1.01857 1.01295 1.21295 0.99366 0.92378 0.96458 1.20984 0.96387 0.95404 1.00697 0.95614 0.91420 0.90427 0.91332 0.91254 0.95697 0.93847 0.89902 0.85734 0.85805 0.78639 0.75794 0.97707 0.88657 0.93003 0.91637 0.90053 0.90646 0.91420 0.84350 0.86043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 9.13 60.07 0.55 0.71 16 2 N -0.54 -4.86 5.01 -252.73 -1.27 -6.13 16 3 C 0.02 0.16 9.57 60.06 0.57 0.74 16 4 C 0.09 0.80 5.11 -4.98 -0.03 0.77 16 5 C -0.08 -0.80 4.89 -104.55 -0.51 -1.31 16 6 C -0.10 -1.06 9.68 -39.64 -0.38 -1.44 16 7 C -0.10 -1.23 9.55 -39.21 -0.37 -1.60 16 8 C -0.03 -0.38 5.87 -104.95 -0.62 -1.00 16 9 C 0.38 7.00 7.94 -153.80 -1.22 5.78 16 10 N -0.88 -14.39 8.93 32.57 0.29 -14.10 16 11 N -0.41 -9.05 10.52 32.63 0.34 -8.71 16 12 O -0.20 -5.16 9.99 -11.47 -0.11 -5.27 16 13 C 0.12 3.18 5.49 37.16 0.20 3.38 16 14 C 0.06 1.47 2.10 -155.66 -0.33 1.14 16 15 C -0.49 -13.71 8.74 -34.44 -0.30 -14.01 16 16 H 0.06 1.64 7.84 -52.48 -0.41 1.22 16 17 C 0.08 2.22 5.16 -17.82 -0.09 2.13 16 18 N -0.87 -25.04 10.87 55.43 0.60 -24.44 16 19 Si 0.89 21.71 29.56 -169.99 -5.02 16.69 16 20 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 21 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 22 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 23 C -0.19 -4.57 9.96 -26.69 -0.27 -4.83 16 24 C -0.21 -4.85 9.92 -26.69 -0.26 -5.12 16 25 C -0.07 -1.07 9.58 -39.22 -0.38 -1.44 16 26 C -0.12 -1.33 7.94 -39.64 -0.31 -1.65 16 27 H 0.03 0.20 8.14 -51.93 -0.42 -0.22 16 28 H 0.07 0.55 8.12 -51.93 -0.42 0.12 16 29 H 0.08 0.79 6.16 -51.93 -0.32 0.47 16 30 H 0.07 0.40 8.12 -51.93 -0.42 -0.02 16 31 H 0.07 0.43 8.12 -51.93 -0.42 0.01 16 32 H 0.02 0.15 8.14 -51.93 -0.42 -0.27 16 33 H 0.04 0.35 8.06 -51.93 -0.42 -0.07 16 34 H 0.08 0.60 8.00 -51.93 -0.42 0.19 16 35 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 36 H 0.12 1.23 6.43 -52.49 -0.34 0.89 16 37 H 0.39 4.82 6.98 -40.82 -0.28 4.54 16 38 H 0.41 7.50 7.95 -40.82 -0.32 7.18 16 39 H 0.00 0.12 8.08 -51.93 -0.42 -0.30 16 40 H 0.10 2.70 6.10 -51.93 -0.32 2.38 16 41 H 0.26 7.22 8.32 -40.82 -0.34 6.88 16 42 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 43 H 0.08 1.89 8.14 -51.93 -0.42 1.47 16 44 H 0.07 1.67 8.14 -51.92 -0.42 1.25 16 45 H 0.07 1.45 8.14 -51.93 -0.42 1.03 16 46 H 0.14 2.13 7.56 -52.49 -0.40 1.73 16 47 H 0.12 1.17 8.02 -52.49 -0.42 0.75 16 LS Contribution 387.63 15.07 5.84 5.84 Total: -1.00 -31.69 387.63 -10.50 -42.19 By element: Atomic # 1 Polarization: 19.11 SS G_CDS: -7.43 Total: 11.68 kcal Atomic # 6 Polarization: -14.01 SS G_CDS: -3.75 Total: -17.75 kcal Atomic # 7 Polarization: -53.35 SS G_CDS: -0.03 Total: -53.38 kcal Atomic # 8 Polarization: -5.16 SS G_CDS: -0.11 Total: -5.27 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -31.69 -10.50 -42.19 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000853673413.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.490 kcal (2) G-P(sol) polarization free energy of solvation -31.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.192 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds